RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 ESPNB1AK53 854 aa7.79□□□□□ -1.16
NUP54-212ENST00000513248 LILRA1O75019 489 aa7.79□□□□□ -1.16
NUP54-212ENST00000513248 KANK3Q6NY19 840 aa7.79□□□□□ -1.16
NUP54-212ENST00000513248 SEPT12Q8IYM1 358 aa7.79□□□□□ -1.16
NUP54-212ENST00000513248 IGHA1P01876 353 aa7.78□□□□□ -1.16
NUP54-212ENST00000513248 PTGIRP43119 386 aa7.78□□□□□ -1.16
NUP54-212ENST00000513248 SRSF11Q05519 484 aaKnown RBP7.78□□□□□ -1.16
NUP54-212ENST00000513248 FOXD4L5Q5VV16 416 aaPredicted RBP7.78□□□□□ -1.16
NUP54-212ENST00000513248 WHAMMQ8TF30 809 aa7.78□□□□□ -1.16
NUP54-212ENST00000513248 ZNF395Q9H8N7 513 aaPredicted RBP7.78□□□□□ -1.16
NUP54-212ENST00000513248 ERVH48-1M5A8F1 160 aa7.77□□□□□ -1.17
NUP54-212ENST00000513248 APBB1O00213 710 aa7.77□□□□□ -1.17
NUP54-212ENST00000513248 FOXK2Q01167 660 aa7.77□□□□□ -1.17
NUP54-212ENST00000513248 LYSMD3Q7Z3D4 306 aa7.77□□□□□ -1.17
NUP54-212ENST00000513248 KDF1Q8NAX2 398 aaPredicted RBP7.77□□□□□ -1.17
NUP54-212ENST00000513248 GMCL1Q96IK5 515 aa7.77□□□□□ -1.17
NUP54-212ENST00000513248 TMPRSS4Q9NRS4 437 aa7.77□□□□□ -1.17
NUP54-212ENST00000513248 ADAMTS2O95450 1211 aa7.76□□□□□ -1.17
NUP54-212ENST00000513248 ADD1P35611 737 aaKnown RBP7.76□□□□□ -1.17
NUP54-212ENST00000513248 DZIP3Q86Y13 1208 aaKnown RBP7.76□□□□□ -1.17
NUP54-212ENST00000513248 SCARF2Q96GP6 870 aaPredicted RBP7.76□□□□□ -1.17
NUP54-212ENST00000513248 RNF144AP50876 292 aaPredicted RBP7.75□□□□□ -1.17
NUP54-212ENST00000513248 MARSP56192 900 aaKnown RBP7.75□□□□□ -1.17
NUP54-212ENST00000513248 CCDC125Q86Z20 511 aa7.75□□□□□ -1.17
NUP54-212ENST00000513248 NDUFB9Q9Y6M9 179 aa7.75□□□□□ -1.17
NUP54-212ENST00000513248 IRS1P35568 1242 aa7.74□□□□□ -1.17
NUP54-212ENST00000513248 COG6Q9Y2V7 657 aa7.74□□□□□ -1.17
NUP54-212ENST00000513248 A6NJR5 290 aa7.73□□□□□ -1.17
NUP54-212ENST00000513248 GPC1P35052 558 aa7.73□□□□□ -1.17
NUP54-212ENST00000513248 MAP3K10Q02779 954 aa7.73□□□□□ -1.17
NUP54-212ENST00000513248 GAS6Q14393 721 aa7.73□□□□□ -1.17
NUP54-212ENST00000513248 FNBP4Q8N3X1 1017 aaPredicted RBP7.73□□□□□ -1.17
NUP54-212ENST00000513248 POM121Q96HA1 1249 aa7.73□□□□□ -1.17
NUP54-212ENST00000513248 RAB15P59190 212 aa7.72□□□□□ -1.17
NUP54-212ENST00000513248 ENAMQ9NRM1 1142 aa7.72□□□□□ -1.17
NUP54-212ENST00000513248 ZBBXA8MT70 800 aa7.71□□□□□ -1.18
NUP54-212ENST00000513248 IRF5Q13568 498 aa7.71□□□□□ -1.18
NUP54-212ENST00000513248 LYPD4Q6UWN0 246 aa7.71□□□□□ -1.18
NUP54-212ENST00000513248 TRIM22Q8IYM9 498 aa7.71□□□□□ -1.18
NUP54-212ENST00000513248 CUEDC1Q9NWM3 386 aaPredicted RBP7.71□□□□□ -1.18
NUP54-212ENST00000513248 TIMELESSQ9UNS1 1208 aa7.71□□□□□ -1.18
NUP54-212ENST00000513248 TBC1D2BQ9UPU7 963 aa7.71□□□□□ -1.18
NUP54-212ENST00000513248 CELA2BP08218 269 aaPredicted RBP7.7□□□□□ -1.18
NUP54-212ENST00000513248 FBXO45P0C2W1 286 aa7.7□□□□□ -1.18
NUP54-212ENST00000513248 GPAT2Q6NUI2 795 aa7.7□□□□□ -1.18
NUP54-212ENST00000513248 ZNF837Q96EG3 531 aaPredicted RBP7.7□□□□□ -1.18
NUP54-212ENST00000513248 PRM3Q9NNZ6 103 aa7.7□□□□□ -1.18
NUP54-212ENST00000513248 MBIPQ9NS73 344 aa7.7□□□□□ -1.18
NUP54-212ENST00000513248 ATP5J2-PTCD1G3V325 749 aa7.69□□□□□ -1.18
NUP54-212ENST00000513248 FOXR1Q6PIV2 292 aa7.69□□□□□ -1.18
NUP54-212ENST00000513248 GDPD2Q9HCC8 539 aa7.69□□□□□ -1.18
NUP54-212ENST00000513248 CYLDQ9NQC7 956 aa7.69□□□□□ -1.18
NUP54-212ENST00000513248 LRRC4BQ9NT99 713 aa7.69□□□□□ -1.18
NUP54-212ENST00000513248 NR1H3Q13133 447 aa7.68□□□□□ -1.18
NUP54-212ENST00000513248 ERICH6Q7L0X2 663 aa7.68□□□□□ -1.18
NUP54-212ENST00000513248 PRICKLE2Q7Z3G6 844 aa7.68□□□□□ -1.18
NUP54-212ENST00000513248 CLUAP1Q96AJ1 413 aa7.68□□□□□ -1.18
NUP54-212ENST00000513248 ZMYND15Q9H091 742 aa7.68□□□□□ -1.18
NUP54-212ENST00000513248 DYRK1BQ9Y463 629 aa7.68□□□□□ -1.18
NUP54-212ENST00000513248 H7C1W4 665 aa7.67□□□□□ -1.18
NUP54-212ENST00000513248 UBTFP17480 764 aaKnown RBP7.67□□□□□ -1.18
NUP54-212ENST00000513248 WDR44Q5JSH3 913 aa7.67□□□□□ -1.18
NUP54-212ENST00000513248 PHF20L1A8MW92 1017 aa7.66□□□□□ -1.18
NUP54-212ENST00000513248 MCCD1P59942 119 aaPredicted RBP7.66□□□□□ -1.18
NUP54-212ENST00000513248 ERVK-9P63128 1117 aa7.66□□□□□ -1.18
NUP54-212ENST00000513248 RNF20Q5VTR2 975 aa7.66□□□□□ -1.18
NUP54-212ENST00000513248 ZNF592Q92610 1267 aa7.66□□□□□ -1.18
NUP54-212ENST00000513248 PCDHB9Q9Y5E1 797 aa7.66□□□□□ -1.18
NUP54-212ENST00000513248 GIGYF1O75420 1035 aaPredicted RBP7.65□□□□□ -1.18
NUP54-212ENST00000513248 IGF1RP08069 1367 aa7.65□□□□□ -1.18
NUP54-212ENST00000513248 RHOQP17081 205 aa7.65□□□□□ -1.18
NUP54-212ENST00000513248 DBN1Q16643 649 aa7.65□□□□□ -1.18
NUP54-212ENST00000513248 A0A1W2PRU2 124 aa7.64□□□□□ -1.19
NUP54-212ENST00000513248 BCRP11274 1271 aa7.64□□□□□ -1.19
NUP54-212ENST00000513248 ABL2P42684 1182 aa7.64□□□□□ -1.19
NUP54-212ENST00000513248 CLN3Q13286 438 aa7.64□□□□□ -1.19
NUP54-212ENST00000513248 CC2D2BQ6DHV5 1058 aa7.64□□□□□ -1.19
NUP54-212ENST00000513248 BEND7Q8N7W2 519 aaPredicted RBP7.64□□□□□ -1.19
NUP54-212ENST00000513248 TRERF1Q96PN7 1200 aa7.64□□□□□ -1.19
NUP54-212ENST00000513248 ZNF330Q9Y3S2 320 aaPredicted RBP7.64□□□□□ -1.19
NUP54-212ENST00000513248 SPATA31C2B4DYI2 1134 aa7.63□□□□□ -1.19
NUP54-212ENST00000513248 MEN1O00255 615 aa7.63□□□□□ -1.19
NUP54-212ENST00000513248 CYP2U1Q7Z449 544 aa7.63□□□□□ -1.19
NUP54-212ENST00000513248 C14orf37Q86TY3 774 aa7.63□□□□□ -1.19
NUP54-212ENST00000513248 GRIP2Q9C0E4 1043 aa7.63□□□□□ -1.19
NUP54-212ENST00000513248 TRAK2O60296 914 aa7.62□□□□□ -1.19
NUP54-212ENST00000513248 RIPOR1Q6ZS17 1223 aa7.62□□□□□ -1.19
NUP54-212ENST00000513248 PODNQ7Z5L7 613 aa7.62□□□□□ -1.19
NUP54-212ENST00000513248 PROSER2Q86WR7 435 aaPredicted RBP7.62□□□□□ -1.19
NUP54-212ENST00000513248 NLRP3Q96P20 1036 aa7.62□□□□□ -1.19
NUP54-212ENST00000513248 NSFL1CQ9UNZ2 370 aaKnown RBP7.62□□□□□ -1.19
NUP54-212ENST00000513248 GPR25O00155 361 aa7.61□□□□□ -1.19
NUP54-212ENST00000513248 SLC27A3Q5K4L6 730 aa7.61□□□□□ -1.19
NUP54-212ENST00000513248 NBPF10Q6P3W6 841 aaKnown RBP7.61□□□□□ -1.19
NUP54-212ENST00000513248 NBPF15Q8N660 670 aa7.61□□□□□ -1.19
NUP54-212ENST00000513248 ACDQ96AP0 544 aa7.61□□□□□ -1.19
NUP54-212ENST00000513248 DCAF5Q96JK2 942 aa7.61□□□□□ -1.19
NUP54-212ENST00000513248 MSTNO14793 375 aa7.6□□□□□ -1.19
NUP54-212ENST00000513248 RAD21O60216 631 aa7.6□□□□□ -1.19
NUP54-212ENST00000513248 POU4F2Q12837 409 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms