RNA–Protein interactions for RNA: ENST00000512683.1

VEGFA-216, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 475 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-216ENST00000512683 TFCP2L1Q9NZI6 479 aa17.52■□□□□ 0.4
VEGFA-216ENST00000512683 NHSQ6T4R5 1651 aa17.52■□□□□ 0.39
VEGFA-216ENST00000512683 TATP17735 454 aaPredicted RBP17.51■□□□□ 0.39
VEGFA-216ENST00000512683 FBLN1P23142 703 aa17.51■□□□□ 0.39
VEGFA-216ENST00000512683 INSRP06213 1382 aa17.51■□□□□ 0.39
VEGFA-216ENST00000512683 SMG6Q86US8 1419 aaKnown RBP17.5■□□□□ 0.39
VEGFA-216ENST00000512683 RRS1Q15050 365 aaKnown RBP17.5■□□□□ 0.39
VEGFA-216ENST00000512683 GGNBP2Q9H3C7 697 aa17.5■□□□□ 0.39
VEGFA-216ENST00000512683 USP47Q96K76 1375 aa17.5■□□□□ 0.39
VEGFA-216ENST00000512683 LTN1O94822 1766 aa17.49■□□□□ 0.39
VEGFA-216ENST00000512683 FLAD1Q8NFF5 587 aa17.48■□□□□ 0.39
VEGFA-216ENST00000512683 CCNL1Q9UK58 526 aaPredicted RBP17.48■□□□□ 0.39
VEGFA-216ENST00000512683 PNPLA7Q6ZV29 1317 aa17.47■□□□□ 0.39
VEGFA-216ENST00000512683 PCGF6Q9BYE7 350 aa17.47■□□□□ 0.39
VEGFA-216ENST00000512683 NSD2O96028 1365 aa17.47■□□□□ 0.39
VEGFA-216ENST00000512683 FLT4P35916 1363 aa17.47■□□□□ 0.39
VEGFA-216ENST00000512683 CLSPNQ9HAW4 1339 aa17.47■□□□□ 0.39
VEGFA-216ENST00000512683 HSP90AB2PQ58FF8 381 aa17.46■□□□□ 0.39
VEGFA-216ENST00000512683 ZNF784Q8NCA9 323 aaPredicted RBP17.46■□□□□ 0.39
VEGFA-216ENST00000512683 PCDH11XQ9BZA7 1347 aa17.46■□□□□ 0.38
VEGFA-216ENST00000512683 PCDH11YQ9BZA8 1340 aa17.46■□□□□ 0.38
VEGFA-216ENST00000512683 GPR162Q16538 588 aa17.45■□□□□ 0.38
VEGFA-216ENST00000512683 SMARCC1Q92922 1105 aaPredicted RBP17.45■□□□□ 0.38
VEGFA-216ENST00000512683 PAPPAQ13219 1627 aa17.45■□□□□ 0.38
VEGFA-216ENST00000512683 CARD14Q9BXL6 1004 aa17.44■□□□□ 0.38
VEGFA-216ENST00000512683 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.44■□□□□ 0.38
VEGFA-216ENST00000512683 FAM208AQ9UK61 1670 aaKnown RBP17.44■□□□□ 0.38
VEGFA-216ENST00000512683 MEGF6O75095 1541 aa17.43■□□□□ 0.38
VEGFA-216ENST00000512683 GRIN3BO60391 1043 aa17.42■□□□□ 0.38
VEGFA-216ENST00000512683 NKX1-1Q15270 411 aaPredicted RBP17.42■□□□□ 0.38
VEGFA-216ENST00000512683 WASHC2AQ641Q2 1341 aa17.42■□□□□ 0.38
VEGFA-216ENST00000512683 COL23A1Q86Y22 540 aaPredicted RBP17.41■□□□□ 0.38
VEGFA-216ENST00000512683 USHBP1Q8N6Y0 703 aa17.41■□□□□ 0.38
VEGFA-216ENST00000512683 SPG7Q9UQ90 795 aa17.41■□□□□ 0.38
VEGFA-216ENST00000512683 MYOM1P52179 1685 aa17.4■□□□□ 0.38
VEGFA-216ENST00000512683 KCNQ4P56696 695 aa17.4■□□□□ 0.38
VEGFA-216ENST00000512683 BTAF1O14981 1849 aa17.4■□□□□ 0.38
VEGFA-216ENST00000512683 CYP27B1O15528 508 aa17.39■□□□□ 0.37
VEGFA-216ENST00000512683 MPRIPQ6WCQ1 1025 aa17.39■□□□□ 0.37
VEGFA-216ENST00000512683 MSH5O43196 834 aa17.38■□□□□ 0.37
VEGFA-216ENST00000512683 CD2APQ9Y5K6 639 aa17.38■□□□□ 0.37
VEGFA-216ENST00000512683 EMILIN1Q9Y6C2 1016 aa17.37■□□□□ 0.37
VEGFA-216ENST00000512683 UTRNP46939 3433 aa17.37■□□□□ 0.37
VEGFA-216ENST00000512683 PLEKHG2Q9H7P9 1386 aa17.37■□□□□ 0.37
VEGFA-216ENST00000512683 PALLDQ8WX93 1383 aa17.36■□□□□ 0.37
VEGFA-216ENST00000512683 KLHL34Q8N239 644 aa17.35■□□□□ 0.37
VEGFA-216ENST00000512683 PIGBQ92521 554 aa17.35■□□□□ 0.37
VEGFA-216ENST00000512683 NCAPD2Q15021 1401 aa17.35■□□□□ 0.37
VEGFA-216ENST00000512683 NSD3Q9BZ95 1437 aa17.35■□□□□ 0.37
VEGFA-216ENST00000512683 KIF20BQ96Q89 1820 aa17.35■□□□□ 0.37
VEGFA-216ENST00000512683 PPM1GO15355 546 aaPredicted RBP17.34■□□□□ 0.37
VEGFA-216ENST00000512683 IFNL2Q8IZJ0 200 aa17.34■□□□□ 0.37
VEGFA-216ENST00000512683 EYA1Q99502 592 aa17.34■□□□□ 0.37
VEGFA-216ENST00000512683 POLKQ9UBT6 870 aa17.34■□□□□ 0.37
VEGFA-216ENST00000512683 RGPD2P0DJD1 1756 aa17.33■□□□□ 0.37
VEGFA-216ENST00000512683 C1QTNF8P60827 252 aa17.33■□□□□ 0.36
VEGFA-216ENST00000512683 AK7Q96M32 723 aa17.33■□□□□ 0.36
VEGFA-216ENST00000512683 KAT6BQ8WYB5 2073 aa17.33■□□□□ 0.36
VEGFA-216ENST00000512683 NLGN2Q8NFZ4 835 aa17.32■□□□□ 0.36
VEGFA-216ENST00000512683 QSER1Q2KHR3 1735 aa17.31■□□□□ 0.36
VEGFA-216ENST00000512683 LOC102724428A0A0B4J2F2 783 aa17.31■□□□□ 0.36
VEGFA-216ENST00000512683 SSFA2P28290 1259 aa17.31■□□□□ 0.36
VEGFA-216ENST00000512683 SIK1P57059 783 aa17.31■□□□□ 0.36
VEGFA-216ENST00000512683 CCER1Q8TC90 406 aaPredicted RBP17.31■□□□□ 0.36
VEGFA-216ENST00000512683 TMOD3Q9NYL9 352 aa17.31■□□□□ 0.36
VEGFA-216ENST00000512683 HSP90AB1P08238 724 aaKnown RBP17.3■□□□□ 0.36
VEGFA-216ENST00000512683 PELP1Q8IZL8 1130 aaKnown RBP17.3■□□□□ 0.36
VEGFA-216ENST00000512683 ERVV-2B6SEH9 535 aa17.29■□□□□ 0.36
VEGFA-216ENST00000512683 PHKG2P15735 406 aa17.29■□□□□ 0.36
VEGFA-216ENST00000512683 EIF4G2P78344 907 aaKnown RBP eCLIP17.29■□□□□ 0.36
VEGFA-216ENST00000512683 LY75O60449 1722 aa17.28■□□□□ 0.36
VEGFA-216ENST00000512683 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.28■□□□□ 0.36
VEGFA-216ENST00000512683 COL24A1Q17RW2 1714 aa17.27■□□□□ 0.36
VEGFA-216ENST00000512683 EIF4A2Q14240 407 aaKnown RBP17.27■□□□□ 0.36
VEGFA-216ENST00000512683 MSL1Q68DK7 614 aa17.27■□□□□ 0.36
VEGFA-216ENST00000512683 GIGYF1O75420 1035 aaPredicted RBP17.26■□□□□ 0.35
VEGFA-216ENST00000512683 YBX3P16989 372 aaKnown RBP eCLIP17.26■□□□□ 0.35
VEGFA-216ENST00000512683 AMOTQ4VCS5 1084 aa17.26■□□□□ 0.35
VEGFA-216ENST00000512683 PLEKHO1Q53GL0 409 aaPredicted RBP17.26■□□□□ 0.35
VEGFA-216ENST00000512683 DOT1LQ8TEK3 1739 aa17.25■□□□□ 0.35
VEGFA-216ENST00000512683 ATP6V1AP38606 617 aa17.25■□□□□ 0.35
VEGFA-216ENST00000512683 DCAF5Q96JK2 942 aa17.25■□□□□ 0.35
VEGFA-216ENST00000512683 ASAP1Q9ULH1 1129 aa17.25■□□□□ 0.35
VEGFA-216ENST00000512683 RC3H1Q5TC82 1133 aaKnown RBP17.24■□□□□ 0.35
VEGFA-216ENST00000512683 ATG3Q9NT62 314 aa17.24■□□□□ 0.35
VEGFA-216ENST00000512683 IGSF1Q8N6C5 1336 aa17.23■□□□□ 0.35
VEGFA-216ENST00000512683 ADRA2BP18089 450 aa17.23■□□□□ 0.35
VEGFA-216ENST00000512683 NLGN1Q8N2Q7 840 aa17.23■□□□□ 0.35
VEGFA-216ENST00000512683 LINC00116Q8NCU8 138 aa17.23■□□□□ 0.35
VEGFA-216ENST00000512683 PANK3Q9H999 370 aa17.23■□□□□ 0.35
VEGFA-216ENST00000512683 SHANK3Q9BYB0 1731 aa17.23■□□□□ 0.35
VEGFA-216ENST00000512683 MAP2P11137 1827 aaKnown RBP17.23■□□□□ 0.35
VEGFA-216ENST00000512683 HSPA5P11021 654 aaKnown RBP17.22■□□□□ 0.35
VEGFA-216ENST00000512683 TRAPPC3LQ5T215 181 aa17.22■□□□□ 0.35
VEGFA-216ENST00000512683 ANKRD26Q9UPS8 1709 aa17.21■□□□□ 0.35
VEGFA-216ENST00000512683 SENP3-EIF4A1A0A087X0R7 540 aa17.21■□□□□ 0.35
VEGFA-216ENST00000512683 GNPATO15228 680 aa17.21■□□□□ 0.35
VEGFA-216ENST00000512683 PHF14O94880 888 aa17.21■□□□□ 0.35
VEGFA-216ENST00000512683 ITPK1Q13572 414 aa17.21■□□□□ 0.35
VEGFA-216ENST00000512683 POLR3GLQ9BT43 218 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms