RNA–Protein interactions for RNA: ENST00000512107.5

MATR3-238, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-238	ENST00000512107	PHACTR3	Q96KR7	559 aa		19.49	■□□□□ 0.71
MATR3-238	ENST00000512107	THRAP3	Q9Y2W1	955 aa	Known RBP	19.49	■□□□□ 0.71
MATR3-238	ENST00000512107	IL2RB	P14784	551 aa		19.48	■□□□□ 0.71
MATR3-238	ENST00000512107	PLEKHF1	Q96S99	279 aa		19.48	■□□□□ 0.71
MATR3-238	ENST00000512107	CCER2	I3L3R5	266 aa		19.47	■□□□□ 0.71
MATR3-238	ENST00000512107	SENP3-EIF4A1	A0A087X0R7	540 aa		19.46	■□□□□ 0.71
MATR3-238	ENST00000512107	PRKAR2B	P31323	418 aa		19.46	■□□□□ 0.71
MATR3-238	ENST00000512107	FAM182B	Q5T319	152 aa		19.46	■□□□□ 0.71
MATR3-238	ENST00000512107	CCDC146	Q8IYE0	955 aa		19.46	■□□□□ 0.71
MATR3-238	ENST00000512107	NUDC	Q9Y266	331 aa		19.46	■□□□□ 0.71
MATR3-238	ENST00000512107	TAT	P17735	454 aa	Predicted RBP	19.44	■□□□□ 0.7
MATR3-238	ENST00000512107	TNS2	Q63HR2	1409 aa		19.43	■□□□□ 0.7
MATR3-238	ENST00000512107	MARCH10	Q8NA82	808 aa	Predicted RBP	19.43	■□□□□ 0.7
MATR3-238	ENST00000512107	RAPGEF4	Q8WZA2	1011 aa		19.43	■□□□□ 0.7
MATR3-238	ENST00000512107	CYP27B1	O15528	508 aa		19.42	■□□□□ 0.7
MATR3-238	ENST00000512107	FCHSD2	O94868	740 aa		19.42	■□□□□ 0.7
MATR3-238	ENST00000512107	MTHFSD	Q2M296	383 aa	Known RBP	19.42	■□□□□ 0.7
MATR3-238	ENST00000512107	FAM9B	Q8IZU0	186 aa		19.41	■□□□□ 0.7
MATR3-238	ENST00000512107	ZCRB1	Q8TBF4	217 aa	Known RBP	19.41	■□□□□ 0.7
MATR3-238	ENST00000512107		A0A0G2JS52	829 aa		19.4	■□□□□ 0.7
MATR3-238	ENST00000512107	MYT1	Q01538	1121 aa		19.4	■□□□□ 0.7
MATR3-238	ENST00000512107	WDR43	Q15061	677 aa	Known RBP eCLIP	19.4	■□□□□ 0.7	7e-6	■■□□□ 14.2
MATR3-238	ENST00000512107	DDB1	Q16531	1140 aa		19.4	■□□□□ 0.7
MATR3-238	ENST00000512107	TOGARAM1	Q9Y4F4	1720 aa		19.39	■□□□□ 0.7
MATR3-238	ENST00000512107	DLG5	Q8TDM6	1919 aa		19.39	■□□□□ 0.7
MATR3-238	ENST00000512107	EXOC5	O00471	708 aa		19.38	■□□□□ 0.69
MATR3-238	ENST00000512107	DDX54	Q8TDD1	881 aa	Known RBP	19.38	■□□□□ 0.69
MATR3-238	ENST00000512107	CDCA7	Q9BWT1	371 aa	Predicted RBP	19.38	■□□□□ 0.69
MATR3-238	ENST00000512107	PTF1A	Q7RTS3	328 aa		19.37	■□□□□ 0.69
MATR3-238	ENST00000512107	VIRMA	Q69YN4	1812 aa	Known RBP	19.37	■□□□□ 0.69
MATR3-238	ENST00000512107	PHKG2	P15735	406 aa		19.36	■□□□□ 0.69
MATR3-238	ENST00000512107	PLEKHO1	Q53GL0	409 aa	Predicted RBP	19.36	■□□□□ 0.69
MATR3-238	ENST00000512107	ZNF530	Q6P9A1	599 aa	Predicted RBP	19.36	■□□□□ 0.69
MATR3-238	ENST00000512107	RRP7A	Q9Y3A4	280 aa	Known RBP	19.36	■□□□□ 0.69
MATR3-238	ENST00000512107	KDM6A	O15550	1401 aa	Predicted RBP	19.35	■□□□□ 0.69
MATR3-238	ENST00000512107	KRT27	Q7Z3Y8	459 aa		19.35	■□□□□ 0.69
MATR3-238	ENST00000512107	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	19.35	■□□□□ 0.69
MATR3-238	ENST00000512107	RUNDC1	Q96C34	613 aa		19.34	■□□□□ 0.69
MATR3-238	ENST00000512107	SBF2	Q86WG5	1849 aa		19.34	■□□□□ 0.69
MATR3-238	ENST00000512107	DOT1L	Q8TEK3	1739 aa		19.34	■□□□□ 0.69
MATR3-238	ENST00000512107	ADAMTS7	Q9UKP4	1686 aa		19.33	■□□□□ 0.69
MATR3-238	ENST00000512107	LGR6	Q9HBX8	967 aa		19.33	■□□□□ 0.68
MATR3-238	ENST00000512107	SPG7	Q9UQ90	795 aa		19.33	■□□□□ 0.68
MATR3-238	ENST00000512107	PCDH11X	Q9BZA7	1347 aa		19.32	■□□□□ 0.68
MATR3-238	ENST00000512107	PCDH11Y	Q9BZA8	1340 aa		19.32	■□□□□ 0.68
MATR3-238	ENST00000512107	APAF1	O14727	1248 aa		19.32	■□□□□ 0.68
MATR3-238	ENST00000512107	PDE3B	Q13370	1112 aa		19.32	■□□□□ 0.68
MATR3-238	ENST00000512107	TMPO	P42166	694 aa	Known RBP	19.31	■□□□□ 0.68
MATR3-238	ENST00000512107	DCTN1	Q14203	1278 aa		19.31	■□□□□ 0.68
MATR3-238	ENST00000512107	NKX1-1	Q15270	411 aa	Predicted RBP	19.31	■□□□□ 0.68
MATR3-238	ENST00000512107	NFE2L2	Q16236	605 aa		19.31	■□□□□ 0.68
MATR3-238	ENST00000512107	AMOT	Q4VCS5	1084 aa		19.31	■□□□□ 0.68
MATR3-238	ENST00000512107	MPRIP	Q6WCQ1	1025 aa		19.31	■□□□□ 0.68
MATR3-238	ENST00000512107	SCN11A	Q9UI33	1791 aa		19.31	■□□□□ 0.68
MATR3-238	ENST00000512107	PLEKHG2	Q9H7P9	1386 aa		19.31	■□□□□ 0.68
MATR3-238	ENST00000512107	KCNQ2	O43526	872 aa		19.3	■□□□□ 0.68
MATR3-238	ENST00000512107	IFNL2	Q8IZJ0	200 aa		19.3	■□□□□ 0.68
MATR3-238	ENST00000512107	IL17RE	Q8NFR9	667 aa		19.3	■□□□□ 0.68
MATR3-238	ENST00000512107	ACSBG1	Q96GR2	724 aa		19.3	■□□□□ 0.68
MATR3-238	ENST00000512107	THUMPD2	Q9BTF0	503 aa	Known RBP	19.3	■□□□□ 0.68
MATR3-238	ENST00000512107	ITGB4	P16144	1822 aa		19.3	■□□□□ 0.68
MATR3-238	ENST00000512107	AKAP4	Q5JQC9	854 aa		19.29	■□□□□ 0.68
MATR3-238	ENST00000512107	TRIM35	Q9UPQ4	493 aa		19.29	■□□□□ 0.68
MATR3-238	ENST00000512107	NEUROD2	Q15784	382 aa		19.28	■□□□□ 0.68
MATR3-238	ENST00000512107	MCM10	Q7L590	875 aa		19.28	■□□□□ 0.68
MATR3-238	ENST00000512107	GAS2L2	Q8NHY3	880 aa		19.28	■□□□□ 0.68
MATR3-238	ENST00000512107	MAP3K5	Q99683	1374 aa		19.28	■□□□□ 0.68
MATR3-238	ENST00000512107	RNMT	O43148	476 aa	Known RBP	19.27	■□□□□ 0.68
MATR3-238	ENST00000512107	MAPK8IP3	Q9UPT6	1336 aa		19.26	■□□□□ 0.67
MATR3-238	ENST00000512107	BCL9	O00512	1426 aa		19.26	■□□□□ 0.67
MATR3-238	ENST00000512107	RIPK4	P57078	832 aa		19.26	■□□□□ 0.67
MATR3-238	ENST00000512107	NHS	Q6T4R5	1651 aa		19.26	■□□□□ 0.67
MATR3-238	ENST00000512107	SIPA1L3	O60292	1781 aa	Predicted RBP	19.26	■□□□□ 0.67
MATR3-238	ENST00000512107	SALL2	Q9Y467	1007 aa	Predicted RBP	19.25	■□□□□ 0.67
MATR3-238	ENST00000512107	TNS1	Q9HBL0	1735 aa	Known RBP	19.25	■□□□□ 0.67
MATR3-238	ENST00000512107	GNAT3	A8MTJ3	354 aa		19.24	■□□□□ 0.67
MATR3-238	ENST00000512107	PRIM1	P49642	420 aa	Known RBP	19.24	■□□□□ 0.67
MATR3-238	ENST00000512107	C1orf141	Q5JVX7	400 aa		19.24	■□□□□ 0.67
MATR3-238	ENST00000512107	UPF1	Q92900	1129 aa	Known RBP eCLIP	19.24	■□□□□ 0.67
MATR3-238	ENST00000512107	PNN	Q9H307	717 aa	Known RBP	19.24	■□□□□ 0.67
MATR3-238	ENST00000512107	EP400	Q96L91	3159 aa		19.24	■□□□□ 0.67
MATR3-238	ENST00000512107	MRC1	P22897	1456 aa		19.23	■□□□□ 0.67
MATR3-238	ENST00000512107	CEMIP	Q8WUJ3	1361 aa		19.23	■□□□□ 0.67
MATR3-238	ENST00000512107	SRCAP	Q6ZRS2	3230 aa		19.23	■□□□□ 0.67
MATR3-238	ENST00000512107	TRIM37	O94972	964 aa		19.22	■□□□□ 0.67
MATR3-238	ENST00000512107	FAM196A	Q6ZSG2	479 aa		19.22	■□□□□ 0.67
MATR3-238	ENST00000512107	DCAF5	Q96JK2	942 aa		19.22	■□□□□ 0.67
MATR3-238	ENST00000512107	BTAF1	O14981	1849 aa		19.22	■□□□□ 0.67
MATR3-238	ENST00000512107	KAT6B	Q8WYB5	2073 aa		19.21	■□□□□ 0.67
MATR3-238	ENST00000512107	PIGB	Q92521	554 aa		19.21	■□□□□ 0.67
MATR3-238	ENST00000512107	NFATC2IP	Q8NCF5	419 aa		19.19	■□□□□ 0.66
MATR3-238	ENST00000512107	PAPPA	Q13219	1627 aa		19.18	■□□□□ 0.66
MATR3-238	ENST00000512107	KCNQ3	O43525	872 aa		19.18	■□□□□ 0.66
MATR3-238	ENST00000512107	HSP90AB1	P08238	724 aa	Known RBP	19.18	■□□□□ 0.66
MATR3-238	ENST00000512107	ERVV-2	B6SEH9	535 aa		19.17	■□□□□ 0.66
MATR3-238	ENST00000512107	HTATSF1	O43719	755 aa	Known RBP	19.17	■□□□□ 0.66
MATR3-238	ENST00000512107	NEFM	P07197	916 aa		19.17	■□□□□ 0.66
MATR3-238	ENST00000512107	SYTL4	Q96C24	671 aa	Predicted RBP	19.17	■□□□□ 0.66
MATR3-238	ENST00000512107	SLC52A2	Q9HAB3	445 aa		19.17	■□□□□ 0.66
MATR3-238	ENST00000512107	SPINK5	Q9NQ38	1064 aa	Predicted RBP	19.17	■□□□□ 0.66

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms