RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 SPON1Q9HCB6 807 aa24.76■■□□□ 1.55
SQSTM1-209ENST00000504627 EMILIN1Q9Y6C2 1016 aa24.76■■□□□ 1.55
SQSTM1-209ENST00000504627 SYTL4Q96C24 671 aaPredicted RBP24.75■■□□□ 1.55
SQSTM1-209ENST00000504627 RGPD2P0DJD1 1756 aa24.75■■□□□ 1.55
SQSTM1-209ENST00000504627 TATP17735 454 aaPredicted RBP24.74■■□□□ 1.55
SQSTM1-209ENST00000504627 MEGF6O75095 1541 aa24.74■■□□□ 1.55
SQSTM1-209ENST00000504627 PPP1R1BQ9UD71 204 aaPredicted RBP24.73■■□□□ 1.55
SQSTM1-209ENST00000504627 SLC15A2Q16348 729 aa24.72■■□□□ 1.55
SQSTM1-209ENST00000504627 ZNF316A6NFI3 1004 aaPredicted RBP24.71■■□□□ 1.55
SQSTM1-209ENST00000504627 PRIM1P49642 420 aaKnown RBP24.7■■□□□ 1.54
SQSTM1-209ENST00000504627 PANK3Q9H999 370 aa24.7■■□□□ 1.54
SQSTM1-209ENST00000504627 TNNT2P45379 298 aaPredicted RBP24.69■■□□□ 1.54
SQSTM1-209ENST00000504627 BTAF1O14981 1849 aa24.69■■□□□ 1.54
SQSTM1-209ENST00000504627 PDGFDQ9GZP0 370 aaPredicted RBP24.67■■□□□ 1.54
SQSTM1-209ENST00000504627 WASHC2AQ641Q2 1341 aa24.66■■□□□ 1.54
SQSTM1-209ENST00000504627 ZBTB7AO95365 584 aa24.66■■□□□ 1.54
SQSTM1-209ENST00000504627 POLKQ9UBT6 870 aa24.65■■□□□ 1.54
SQSTM1-209ENST00000504627 PCDH11XQ9BZA7 1347 aa24.64■■□□□ 1.54
SQSTM1-209ENST00000504627 PCDH11YQ9BZA8 1340 aa24.64■■□□□ 1.54
SQSTM1-209ENST00000504627 SLC27A3Q5K4L6 730 aa24.63■■□□□ 1.53
SQSTM1-209ENST00000504627 LRRC4BQ9NT99 713 aa24.63■■□□□ 1.53
SQSTM1-209ENST00000504627 SHANK3Q9BYB0 1731 aa24.62■■□□□ 1.53
SQSTM1-209ENST00000504627 ATF5Q9Y2D1 282 aaPredicted RBP24.62■■□□□ 1.53
SQSTM1-209ENST00000504627 DOT1LQ8TEK3 1739 aa24.61■■□□□ 1.53
SQSTM1-209ENST00000504627 MAP2P11137 1827 aaKnown RBP24.61■■□□□ 1.53
SQSTM1-209ENST00000504627 CASZ1Q86V15 1759 aa24.61■■□□□ 1.53
SQSTM1-209ENST00000504627 EYA1Q99502 592 aa24.6■■□□□ 1.53
SQSTM1-209ENST00000504627 KNSTRNQ9Y448 316 aa24.59■■□□□ 1.53
SQSTM1-209ENST00000504627 NSD2O96028 1365 aa24.58■■□□□ 1.53
SQSTM1-209ENST00000504627 ZNF827Q17R98 1081 aa24.58■■□□□ 1.53
SQSTM1-209ENST00000504627 MORC1Q86VD1 984 aa24.58■■□□□ 1.53
SQSTM1-209ENST00000504627 MTFR1LQ9H019 292 aa24.58■■□□□ 1.53
SQSTM1-209ENST00000504627 SPG7Q9UQ90 795 aa24.58■■□□□ 1.53
SQSTM1-209ENST00000504627 ANKRD26Q9UPS8 1709 aa24.58■■□□□ 1.52
SQSTM1-209ENST00000504627 CYP27B1O15528 508 aa24.57■■□□□ 1.52
SQSTM1-209ENST00000504627 KCNQ4P56696 695 aa24.57■■□□□ 1.52
SQSTM1-209ENST00000504627 EIF4A2Q14240 407 aaKnown RBP24.56■■□□□ 1.52
SQSTM1-209ENST00000504627 CCNL1Q9UK58 526 aaPredicted RBP24.56■■□□□ 1.52
SQSTM1-209ENST00000504627 PAPPAQ13219 1627 aa24.56■■□□□ 1.52
SQSTM1-209ENST00000504627 MPRIPQ6WCQ1 1025 aa24.55■■□□□ 1.52
SQSTM1-209ENST00000504627 AKT1S1Q96B36 256 aa24.55■■□□□ 1.52
SQSTM1-209ENST00000504627 NCAPD2Q15021 1401 aa24.54■■□□□ 1.52
SQSTM1-209ENST00000504627 DCAF8L1A6NGE4 600 aa24.54■■□□□ 1.52
SQSTM1-209ENST00000504627 PTGER2P43116 358 aa24.54■■□□□ 1.52
SQSTM1-209ENST00000504627 TFCP2L1Q9NZI6 479 aa24.54■■□□□ 1.52
SQSTM1-209ENST00000504627 KIF7Q2M1P5 1343 aa24.53■■□□□ 1.52
SQSTM1-209ENST00000504627 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.51■■□□□ 1.51
SQSTM1-209ENST00000504627 PKD1L3Q7Z443 1732 aa24.49■■□□□ 1.51
SQSTM1-209ENST00000504627 LY75O60449 1722 aa24.48■■□□□ 1.51
SQSTM1-209ENST00000504627 NKX1-1Q15270 411 aaPredicted RBP24.48■■□□□ 1.51
SQSTM1-209ENST00000504627 IFNL2Q8IZJ0 200 aa24.48■■□□□ 1.51
SQSTM1-209ENST00000504627 PALLDQ8WX93 1383 aa24.47■■□□□ 1.51
SQSTM1-209ENST00000504627 PNPLA7Q6ZV29 1317 aa24.47■■□□□ 1.51
SQSTM1-209ENST00000504627 HMGB2P26583 209 aaKnown RBP24.47■■□□□ 1.51
SQSTM1-209ENST00000504627 SLC16A10Q8TF71 515 aa24.47■■□□□ 1.51
SQSTM1-209ENST00000504627 SMARCC1Q92922 1105 aaPredicted RBP24.47■■□□□ 1.51
SQSTM1-209ENST00000504627 IGSF1Q8N6C5 1336 aa24.46■■□□□ 1.51
SQSTM1-209ENST00000504627 ARXQ96QS3 562 aa24.46■■□□□ 1.51
SQSTM1-209ENST00000504627 MSH5O43196 834 aa24.45■■□□□ 1.5
SQSTM1-209ENST00000504627 PHKG2P15735 406 aa24.45■■□□□ 1.5
SQSTM1-209ENST00000504627 PIGBQ92521 554 aa24.45■■□□□ 1.5
SQSTM1-209ENST00000504627 SGIP1Q9BQI5 828 aa24.45■■□□□ 1.5
SQSTM1-209ENST00000504627 FHDC1Q9C0D6 1143 aaPredicted RBP24.45■■□□□ 1.5
SQSTM1-209ENST00000504627 AMER1Q5JTC6 1135 aaPredicted RBP24.44■■□□□ 1.5
SQSTM1-209ENST00000504627 TMOD3Q9NYL9 352 aa24.44■■□□□ 1.5
SQSTM1-209ENST00000504627 POLD1P28340 1107 aa24.43■■□□□ 1.5
SQSTM1-209ENST00000504627 PLEKHO1Q53GL0 409 aaPredicted RBP24.42■■□□□ 1.5
SQSTM1-209ENST00000504627 SYT17Q9BSW7 474 aa24.42■■□□□ 1.5
SQSTM1-209ENST00000504627 PLEKHG2Q9H7P9 1386 aa24.42■■□□□ 1.5
SQSTM1-209ENST00000504627 TOGARAM1Q9Y4F4 1720 aa24.41■■□□□ 1.5
SQSTM1-209ENST00000504627 QSER1Q2KHR3 1735 aa24.4■■□□□ 1.5
SQSTM1-209ENST00000504627 ITGB4P16144 1822 aa24.4■■□□□ 1.5
SQSTM1-209ENST00000504627 AMOTQ4VCS5 1084 aa24.39■■□□□ 1.49
SQSTM1-209ENST00000504627 HSP90AB1P08238 724 aaKnown RBP24.38■■□□□ 1.49
SQSTM1-209ENST00000504627 CC2D1BQ5T0F9 858 aaKnown RBP24.38■■□□□ 1.49
SQSTM1-209ENST00000504627 KLHL34Q8N239 644 aa24.38■■□□□ 1.49
SQSTM1-209ENST00000504627 SULT6B1Q6IMI4 303 aa24.37■■□□□ 1.49
SQSTM1-209ENST00000504627 ZNF530Q6P9A1 599 aaPredicted RBP24.37■■□□□ 1.49
SQSTM1-209ENST00000504627 COL23A1Q86Y22 540 aaPredicted RBP24.37■■□□□ 1.49
SQSTM1-209ENST00000504627 AEBP1Q8IUX7 1158 aa24.37■■□□□ 1.49
SQSTM1-209ENST00000504627 AK7Q96M32 723 aa24.37■■□□□ 1.49
SQSTM1-209ENST00000504627 TUBGCP6Q96RT7 1819 aa24.36■■□□□ 1.49
SQSTM1-209ENST00000504627 PER1O15534 1290 aaPredicted RBP24.36■■□□□ 1.49
SQSTM1-209ENST00000504627 FLAD1Q8NFF5 587 aa24.36■■□□□ 1.49
SQSTM1-209ENST00000504627 ASAP1Q9ULH1 1129 aa24.36■■□□□ 1.49
SQSTM1-209ENST00000504627 C5P01031 1676 aa24.35■■□□□ 1.49
SQSTM1-209ENST00000504627 LOC102724428A0A0B4J2F2 783 aa24.35■■□□□ 1.49
SQSTM1-209ENST00000504627 YY1P25490 414 aa24.35■■□□□ 1.49
SQSTM1-209ENST00000504627 IL13P35225 146 aa24.35■■□□□ 1.49
SQSTM1-209ENST00000504627 MTHFSP49914 203 aa24.35■■□□□ 1.49
SQSTM1-209ENST00000504627 SIK1P57059 783 aa24.35■■□□□ 1.49
SQSTM1-209ENST00000504627 CNGB1Q14028 1251 aaPredicted RBP24.35■■□□□ 1.49
SQSTM1-209ENST00000504627 C1orf141Q5JVX7 400 aa24.35■■□□□ 1.49
SQSTM1-209ENST00000504627 DCAF5Q96JK2 942 aa24.35■■□□□ 1.49
SQSTM1-209ENST00000504627 ERVV-2B6SEH9 535 aa24.33■■□□□ 1.49
SQSTM1-209ENST00000504627 ATP6V1AP38606 617 aa24.32■■□□□ 1.48
SQSTM1-209ENST00000504627 ATG3Q9NT62 314 aa24.32■■□□□ 1.48
SQSTM1-209ENST00000504627 MSL1Q68DK7 614 aa24.31■■□□□ 1.48
SQSTM1-209ENST00000504627 MAP3K5Q99683 1374 aa24.3■■□□□ 1.48
SQSTM1-209ENST00000504627 PHF14O94880 888 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms