RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 KIF24Q5T7B8 1368 aa19.51■□□□□ 0.71
HOXC9-202ENST00000504557 PARD3Q8TEW0 1356 aa19.51■□□□□ 0.71
HOXC9-202ENST00000504557 RGPD3A6NKT7 1758 aaPredicted RBP19.51■□□□□ 0.71
HOXC9-202ENST00000504557 RGPD4Q7Z3J3 1758 aa19.51■□□□□ 0.71
HOXC9-202ENST00000504557 TATP17735 454 aaPredicted RBP19.5■□□□□ 0.71
HOXC9-202ENST00000504557 ZCRB1Q8TBF4 217 aaKnown RBP19.5■□□□□ 0.71
HOXC9-202ENST00000504557 SYTL4Q96C24 671 aaPredicted RBP19.5■□□□□ 0.71
HOXC9-202ENST00000504557 BCL9O00512 1426 aa19.5■□□□□ 0.71
HOXC9-202ENST00000504557 WASHC2AQ641Q2 1341 aa19.49■□□□□ 0.71
HOXC9-202ENST00000504557 NSD2O96028 1365 aa19.48■□□□□ 0.71
HOXC9-202ENST00000504557 NBPF14Q5TI25 921 aa19.48■□□□□ 0.71
HOXC9-202ENST00000504557 PLSCR1O15162 318 aa19.46■□□□□ 0.71
HOXC9-202ENST00000504557 CC2D1BQ5T0F9 858 aaKnown RBP19.46■□□□□ 0.71
HOXC9-202ENST00000504557 EIF4A2Q14240 407 aaKnown RBP19.45■□□□□ 0.7
HOXC9-202ENST00000504557 EYA1Q99502 592 aa19.45■□□□□ 0.7
HOXC9-202ENST00000504557 PRIM1P49642 420 aaKnown RBP19.43■□□□□ 0.7
HOXC9-202ENST00000504557 TXNRD1Q16881 649 aa19.43■□□□□ 0.7
HOXC9-202ENST00000504557 AMER1Q5JTC6 1135 aaPredicted RBP19.43■□□□□ 0.7
HOXC9-202ENST00000504557 PROM2Q8N271 834 aa19.43■□□□□ 0.7
HOXC9-202ENST00000504557 PKD1L3Q7Z443 1732 aa19.42■□□□□ 0.7
HOXC9-202ENST00000504557 ANO8Q9HCE9 1232 aaPredicted RBP19.41■□□□□ 0.7
HOXC9-202ENST00000504557 PCDH11XQ9BZA7 1347 aa19.41■□□□□ 0.7
HOXC9-202ENST00000504557 PCDH11YQ9BZA8 1340 aa19.41■□□□□ 0.7
HOXC9-202ENST00000504557 ITGB4P16144 1822 aa19.41■□□□□ 0.7
HOXC9-202ENST00000504557 LRP5O75197 1615 aa19.4■□□□□ 0.7
HOXC9-202ENST00000504557 TOGARAM1Q9Y4F4 1720 aa19.38■□□□□ 0.69
HOXC9-202ENST00000504557 SRCAPQ6ZRS2 3230 aa19.38■□□□□ 0.69
HOXC9-202ENST00000504557 CYP27B1O15528 508 aa19.37■□□□□ 0.69
HOXC9-202ENST00000504557 PER1O15534 1290 aaPredicted RBP19.37■□□□□ 0.69
HOXC9-202ENST00000504557 KCNQ4P56696 695 aa19.37■□□□□ 0.69
HOXC9-202ENST00000504557 STK32BQ9NY57 414 aa19.37■□□□□ 0.69
HOXC9-202ENST00000504557 SPG7Q9UQ90 795 aa19.37■□□□□ 0.69
HOXC9-202ENST00000504557 NCAPD2Q15021 1401 aa19.36■□□□□ 0.69
HOXC9-202ENST00000504557 MTHFSP49914 203 aa19.35■□□□□ 0.69
HOXC9-202ENST00000504557 MPRIPQ6WCQ1 1025 aa19.35■□□□□ 0.69
HOXC9-202ENST00000504557 LY75O60449 1722 aa19.34■□□□□ 0.69
HOXC9-202ENST00000504557 IGSF1Q8N6C5 1336 aa19.34■□□□□ 0.69
HOXC9-202ENST00000504557 AEBP1Q8IUX7 1158 aa19.34■□□□□ 0.69
HOXC9-202ENST00000504557 PDGFDQ9GZP0 370 aaPredicted RBP19.34■□□□□ 0.69
HOXC9-202ENST00000504557 LRRC4BQ9NT99 713 aa19.33■□□□□ 0.68
HOXC9-202ENST00000504557 CASZ1Q86V15 1759 aa19.32■□□□□ 0.68
HOXC9-202ENST00000504557 SLC15A2Q16348 729 aa19.31■□□□□ 0.68
HOXC9-202ENST00000504557 SULT6B1Q6IMI4 303 aa19.31■□□□□ 0.68
HOXC9-202ENST00000504557 PAPPAQ13219 1627 aa19.31■□□□□ 0.68
HOXC9-202ENST00000504557 TUBGCP6Q96RT7 1819 aa19.3■□□□□ 0.68
HOXC9-202ENST00000504557 ZBTB7AO95365 584 aa19.29■□□□□ 0.68
HOXC9-202ENST00000504557 PHKG2P15735 406 aa19.29■□□□□ 0.68
HOXC9-202ENST00000504557 IL13P35225 146 aa19.29■□□□□ 0.68
HOXC9-202ENST00000504557 ZNF827Q17R98 1081 aa19.29■□□□□ 0.68
HOXC9-202ENST00000504557 IFNL2Q8IZJ0 200 aa19.29■□□□□ 0.68
HOXC9-202ENST00000504557 CCNL1Q9UK58 526 aaPredicted RBP19.29■□□□□ 0.68
HOXC9-202ENST00000504557 HMOX1P09601 288 aa19.28■□□□□ 0.68
HOXC9-202ENST00000504557 PLEKHO1Q53GL0 409 aaPredicted RBP19.28■□□□□ 0.68
HOXC9-202ENST00000504557 ZNF530Q6P9A1 599 aaPredicted RBP19.28■□□□□ 0.68
HOXC9-202ENST00000504557 SPON1Q9HCB6 807 aa19.28■□□□□ 0.68
HOXC9-202ENST00000504557 PPP1R1BQ9UD71 204 aaPredicted RBP19.28■□□□□ 0.68
HOXC9-202ENST00000504557 VIRMAQ69YN4 1812 aaKnown RBP19.28■□□□□ 0.68
HOXC9-202ENST00000504557 SLC27A3Q5K4L6 730 aa19.27■□□□□ 0.68
HOXC9-202ENST00000504557 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.27■□□□□ 0.68
HOXC9-202ENST00000504557 ATF5Q9Y2D1 282 aaPredicted RBP19.27■□□□□ 0.68
HOXC9-202ENST00000504557 TAF1LQ8IZX4 1826 aa19.27■□□□□ 0.68
HOXC9-202ENST00000504557 C5P01031 1676 aa19.27■□□□□ 0.67
HOXC9-202ENST00000504557 DIAPH1O60610 1272 aaKnown RBP19.26■□□□□ 0.67
HOXC9-202ENST00000504557 TMOD3Q9NYL9 352 aa19.26■□□□□ 0.67
HOXC9-202ENST00000504557 PALLDQ8WX93 1383 aa19.26■□□□□ 0.67
HOXC9-202ENST00000504557 NPC1L1Q9UHC9 1359 aa19.25■□□□□ 0.67
HOXC9-202ENST00000504557 PIGBQ92521 554 aa19.25■□□□□ 0.67
HOXC9-202ENST00000504557 U2SURPO15042 1029 aaKnown RBP19.24■□□□□ 0.67
HOXC9-202ENST00000504557 NKX1-1Q15270 411 aaPredicted RBP19.24■□□□□ 0.67
HOXC9-202ENST00000504557 C1orf141Q5JVX7 400 aa19.24■□□□□ 0.67
HOXC9-202ENST00000504557 TFCP2L1Q9NZI6 479 aa19.24■□□□□ 0.67
HOXC9-202ENST00000504557 MSH5O43196 834 aa19.22■□□□□ 0.67
HOXC9-202ENST00000504557 AMOTQ4VCS5 1084 aa19.22■□□□□ 0.67
HOXC9-202ENST00000504557 AKT1S1Q96B36 256 aa19.22■□□□□ 0.67
HOXC9-202ENST00000504557 QSER1Q2KHR3 1735 aa19.22■□□□□ 0.67
HOXC9-202ENST00000504557 ASAP1Q9ULH1 1129 aa19.21■□□□□ 0.67
HOXC9-202ENST00000504557 SCN11AQ9UI33 1791 aa19.2■□□□□ 0.66
HOXC9-202ENST00000504557 SMARCC1Q92922 1105 aaPredicted RBP19.2■□□□□ 0.66
HOXC9-202ENST00000504557 KDRP35968 1356 aa19.19■□□□□ 0.66
HOXC9-202ENST00000504557 KDM6AO15550 1401 aaPredicted RBP19.19■□□□□ 0.66
HOXC9-202ENST00000504557 HSP90AB1P08238 724 aaKnown RBP19.19■□□□□ 0.66
HOXC9-202ENST00000504557 COL3A1P02461 1466 aaPredicted RBP19.19■□□□□ 0.66
HOXC9-202ENST00000504557 CABP4P57796 275 aa19.18■□□□□ 0.66
HOXC9-202ENST00000504557 DCAF5Q96JK2 942 aa19.18■□□□□ 0.66
HOXC9-202ENST00000504557 CFAP53Q96M91 514 aa19.18■□□□□ 0.66
HOXC9-202ENST00000504557 PNPLA7Q6ZV29 1317 aa19.18■□□□□ 0.66
HOXC9-202ENST00000504557 C4BP0C0L5 1744 aa19.17■□□□□ 0.66
HOXC9-202ENST00000504557 PPP2R1AP30153 589 aa19.17■□□□□ 0.66
HOXC9-202ENST00000504557 MTFR1LQ9H019 292 aa19.17■□□□□ 0.66
HOXC9-202ENST00000504557 PLEKHG2Q9H7P9 1386 aa19.17■□□□□ 0.66
HOXC9-202ENST00000504557 RBM42Q9BTD8 480 aaKnown RBP19.16■□□□□ 0.66
HOXC9-202ENST00000504557 ATG3Q9NT62 314 aa19.16■□□□□ 0.66
HOXC9-202ENST00000504557 LOC102724428A0A0B4J2F2 783 aa19.15■□□□□ 0.66
HOXC9-202ENST00000504557 ERVV-2B6SEH9 535 aa19.15■□□□□ 0.66
HOXC9-202ENST00000504557 SIK1P57059 783 aa19.15■□□□□ 0.66
HOXC9-202ENST00000504557 PHF14O94880 888 aa19.14■□□□□ 0.65
HOXC9-202ENST00000504557 ATP6V1AP38606 617 aa19.14■□□□□ 0.65
HOXC9-202ENST00000504557 PTGER2P43116 358 aa19.14■□□□□ 0.65
HOXC9-202ENST00000504557 DDX10Q13206 875 aaKnown RBP19.14■□□□□ 0.65
HOXC9-202ENST00000504557 SMIM5Q71RC9 77 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms