RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 KCNH5Q8NCM2 988 aa18.43■□□□□ 0.54
LSM6-204ENST00000504181 N4BP2Q86UW6 1770 aaPredicted RBP18.42■□□□□ 0.54
LSM6-204ENST00000504181 NLRP2Q9NX02 1062 aa18.42■□□□□ 0.54
LSM6-204ENST00000504181 IGSF1Q8N6C5 1336 aa18.42■□□□□ 0.54
LSM6-204ENST00000504181 SYTL4Q96C24 671 aaPredicted RBP18.41■□□□□ 0.54
LSM6-204ENST00000504181 CABP1Q9NZU7 370 aa18.41■□□□□ 0.54
LSM6-204ENST00000504181 FAM208AQ9UK61 1670 aaKnown RBP18.39■□□□□ 0.53
LSM6-204ENST00000504181 PKD1L3Q7Z443 1732 aa18.39■□□□□ 0.53
LSM6-204ENST00000504181 RGPD2P0DJD1 1756 aa18.39■□□□□ 0.53
LSM6-204ENST00000504181 UBR3Q6ZT12 1888 aa18.39■□□□□ 0.53
LSM6-204ENST00000504181 TOGARAM1Q9Y4F4 1720 aa18.38■□□□□ 0.53
LSM6-204ENST00000504181 CCNL1Q9UK58 526 aaPredicted RBP18.38■□□□□ 0.53
LSM6-204ENST00000504181 ERBB3P21860 1342 aa18.38■□□□□ 0.53
LSM6-204ENST00000504181 KIAA1551Q9HCM1 1747 aa18.37■□□□□ 0.53
LSM6-204ENST00000504181 DDX54Q8TDD1 881 aaKnown RBP18.37■□□□□ 0.53
LSM6-204ENST00000504181 NMRK2Q9NPI5 230 aa18.37■□□□□ 0.53
LSM6-204ENST00000504181 MON2Q7Z3U7 1717 aa18.37■□□□□ 0.53
LSM6-204ENST00000504181 NSD2O96028 1365 aa18.36■□□□□ 0.53
LSM6-204ENST00000504181 KIF13BQ9NQT8 1826 aa18.36■□□□□ 0.53
LSM6-204ENST00000504181 TTC21BQ7Z4L5 1316 aa18.35■□□□□ 0.53
LSM6-204ENST00000504181 PRIM1P49642 420 aaKnown RBP18.35■□□□□ 0.53
LSM6-204ENST00000504181 ANKRD36BQ8N2N9 1353 aa18.34■□□□□ 0.53
LSM6-204ENST00000504181 RBM46Q8TBY0 533 aaKnown RBP18.34■□□□□ 0.53
LSM6-204ENST00000504181 BRCA1P38398 1863 aaKnown RBP18.34■□□□□ 0.53
LSM6-204ENST00000504181 C4BP0C0L5 1744 aa18.34■□□□□ 0.53
LSM6-204ENST00000504181 POTEDQ86YR6 584 aa18.33■□□□□ 0.52
LSM6-204ENST00000504181 STAC3Q96MF2 364 aa18.33■□□□□ 0.52
LSM6-204ENST00000504181 TNRC6CQ9HCJ0 1690 aaKnown RBP18.33■□□□□ 0.52
LSM6-204ENST00000504181 C16orf71Q8IYS4 520 aaPredicted RBP18.32■□□□□ 0.52
LSM6-204ENST00000504181 CENPJQ9HC77 1338 aaPredicted RBP18.31■□□□□ 0.52
LSM6-204ENST00000504181 ARFGEF1Q9Y6D6 1849 aa18.3■□□□□ 0.52
LSM6-204ENST00000504181 ANKRD24Q8TF21 1146 aa18.3■□□□□ 0.52
LSM6-204ENST00000504181 ITGB4P16144 1822 aa18.3■□□□□ 0.52
LSM6-204ENST00000504181 TTC21AQ8NDW8 1320 aa18.29■□□□□ 0.52
LSM6-204ENST00000504181 HSPA1AP0DMV8 641 aaKnown RBP18.29■□□□□ 0.52
LSM6-204ENST00000504181 HSPA1BP0DMV9 641 aaKnown RBP18.29■□□□□ 0.52
LSM6-204ENST00000504181 USP47Q96K76 1375 aa18.29■□□□□ 0.52
LSM6-204ENST00000504181 SBF1O95248 1867 aa18.28■□□□□ 0.52
LSM6-204ENST00000504181 FSTL1Q12841 308 aa18.27■□□□□ 0.52
LSM6-204ENST00000504181 FLAD1Q8NFF5 587 aa18.27■□□□□ 0.52
LSM6-204ENST00000504181 NBPF1Q3BBV0 1214 aa18.26■□□□□ 0.51
LSM6-204ENST00000504181 ZNF692Q9BU19 519 aaPredicted RBP18.25■□□□□ 0.51
LSM6-204ENST00000504181 KCPQ6ZWJ8 1503 aa18.24■□□□□ 0.51
LSM6-204ENST00000504181 PXDNLA1KZ92 1463 aa18.24■□□□□ 0.51
LSM6-204ENST00000504181 KTN1Q86UP2 1357 aaKnown RBP18.23■□□□□ 0.51
LSM6-204ENST00000504181 PHF14O94880 888 aa18.22■□□□□ 0.51
LSM6-204ENST00000504181 ARHGAP27Q6ZUM4 889 aa18.22■□□□□ 0.51
LSM6-204ENST00000504181 SMIM5Q71RC9 77 aa18.22■□□□□ 0.51
LSM6-204ENST00000504181 AMIGO3Q86WK7 504 aa18.22■□□□□ 0.51
LSM6-204ENST00000504181 BCS1LQ9Y276 419 aa18.22■□□□□ 0.51
LSM6-204ENST00000504181 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.2■□□□□ 0.5
LSM6-204ENST00000504181 CCDC88AQ3V6T2 1871 aa18.2■□□□□ 0.5
LSM6-204ENST00000504181 PLEKHG2Q9H7P9 1386 aa18.19■□□□□ 0.5
LSM6-204ENST00000504181 LTV1Q96GA3 475 aaPredicted RBP18.19■□□□□ 0.5
LSM6-204ENST00000504181 AK7Q96M32 723 aa18.19■□□□□ 0.5
LSM6-204ENST00000504181 PCDH10Q9P2E7 1040 aa18.19■□□□□ 0.5
LSM6-204ENST00000504181 EVC2Q86UK5 1308 aa18.19■□□□□ 0.5
LSM6-204ENST00000504181 MAP2P11137 1827 aaKnown RBP18.19■□□□□ 0.5
LSM6-204ENST00000504181 MEGF6O75095 1541 aa18.18■□□□□ 0.5
LSM6-204ENST00000504181 USP31Q70CQ4 1352 aa18.18■□□□□ 0.5
LSM6-204ENST00000504181 C10orf71Q711Q0 1435 aa18.17■□□□□ 0.5
LSM6-204ENST00000504181 C9orf131Q5VYM1 1079 aa18.17■□□□□ 0.5
LSM6-204ENST00000504181 ZCRB1Q8TBF4 217 aaKnown RBP18.17■□□□□ 0.5
LSM6-204ENST00000504181 RRAGCQ9HB90 399 aa18.17■□□□□ 0.5
LSM6-204ENST00000504181 PALLDQ8WX93 1383 aa18.17■□□□□ 0.5
LSM6-204ENST00000504181 NME9Q86XW9 330 aa18.16■□□□□ 0.5
LSM6-204ENST00000504181 KDM2BQ8NHM5 1336 aa18.16■□□□□ 0.5
LSM6-204ENST00000504181 NSD3Q9BZ95 1437 aa18.15■□□□□ 0.5
LSM6-204ENST00000504181 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.15■□□□□ 0.5
LSM6-204ENST00000504181 A0A0G2JLW4 131 aa18.15■□□□□ 0.5
LSM6-204ENST00000504181 SMC1BQ8NDV3 1235 aa18.15■□□□□ 0.5
LSM6-204ENST00000504181 RAB3GAP2Q9H2M9 1393 aa18.15■□□□□ 0.5
LSM6-204ENST00000504181 C4AP0C0L4 1744 aa18.13■□□□□ 0.49
LSM6-204ENST00000504181 FCHSD2O94868 740 aa18.13■□□□□ 0.49
LSM6-204ENST00000504181 HMGB2P26583 209 aaKnown RBP18.12■□□□□ 0.49
LSM6-204ENST00000504181 TIAM2Q8IVF5 1701 aa18.12■□□□□ 0.49
LSM6-204ENST00000504181 MMP10P09238 476 aa18.11■□□□□ 0.49
LSM6-204ENST00000504181 TGFB2P61812 414 aa18.11■□□□□ 0.49
LSM6-204ENST00000504181 IP6K1Q92551 441 aa18.11■□□□□ 0.49
LSM6-204ENST00000504181 SSFA2P28290 1259 aa18.1■□□□□ 0.49
LSM6-204ENST00000504181 FAM161AQ3B820 660 aa18.1■□□□□ 0.49
LSM6-204ENST00000504181 MPRIPQ6WCQ1 1025 aa18.09■□□□□ 0.49
LSM6-204ENST00000504181 RNF181Q9P0P0 153 aa18.09■□□□□ 0.49
LSM6-204ENST00000504181 CD163L1Q9NR16 1453 aa18.08■□□□□ 0.49
LSM6-204ENST00000504181 SBNO2Q9Y2G9 1366 aa18.08■□□□□ 0.49
LSM6-204ENST00000504181 DPEP1P16444 411 aa18.08■□□□□ 0.48
LSM6-204ENST00000504181 LINC00116Q8NCU8 138 aa18.05■□□□□ 0.48
LSM6-204ENST00000504181 VIRMAQ69YN4 1812 aaKnown RBP18.05■□□□□ 0.48
LSM6-204ENST00000504181 GNPATO15228 680 aa18.04■□□□□ 0.48
LSM6-204ENST00000504181 FOXN1O15353 648 aa18.04■□□□□ 0.48
LSM6-204ENST00000504181 USHBP1Q8N6Y0 703 aa18.03■□□□□ 0.48
LSM6-204ENST00000504181 SMARCC1Q92922 1105 aaPredicted RBP18.03■□□□□ 0.48
LSM6-204ENST00000504181 HOXC9P31274 260 aa18.02■□□□□ 0.48
LSM6-204ENST00000504181 EDC4Q6P2E9 1401 aaKnown RBP18.02■□□□□ 0.48
LSM6-204ENST00000504181 COL5A3P25940 1745 aaPredicted RBP18.01■□□□□ 0.47
LSM6-204ENST00000504181 KCNA3P22001 575 aa18.01■□□□□ 0.47
LSM6-204ENST00000504181 CCDC87Q9NVE4 849 aa18.01■□□□□ 0.47
LSM6-204ENST00000504181 PCDH11XQ9BZA7 1347 aa18■□□□□ 0.47
LSM6-204ENST00000504181 PCDH11YQ9BZA8 1340 aa18■□□□□ 0.47
LSM6-204ENST00000504181 DCAF5Q96JK2 942 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms