RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 MYBBP1AQ9BQG0 1328 aaKnown RBP20.92■□□□□ 0.94
CPNE1-228ENST00000498814 KDRP35968 1356 aa20.92■□□□□ 0.94
CPNE1-228ENST00000498814 PLEKHG2Q9H7P9 1386 aa20.92■□□□□ 0.94
CPNE1-228ENST00000498814 FAM196AQ6ZSG2 479 aa20.91■□□□□ 0.94
CPNE1-228ENST00000498814 SBF2Q86WG5 1849 aa20.9■□□□□ 0.94
CPNE1-228ENST00000498814 SULT6B1Q6IMI4 303 aa20.9■□□□□ 0.94
CPNE1-228ENST00000498814 UPF1Q92900 1129 aaKnown RBP eCLIP20.9■□□□□ 0.94
CPNE1-228ENST00000498814 BCL9O00512 1426 aa20.89■□□□□ 0.94
CPNE1-228ENST00000498814 AEBP1Q8IUX7 1158 aa20.89■□□□□ 0.93
CPNE1-228ENST00000498814 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.89■□□□□ 0.93
CPNE1-228ENST00000498814 NUDCQ9Y266 331 aa20.88■□□□□ 0.93
CPNE1-228ENST00000498814 CCDC125Q86Z20 511 aa20.87■□□□□ 0.93
CPNE1-228ENST00000498814 U2SURPO15042 1029 aaKnown RBP20.86■□□□□ 0.93
CPNE1-228ENST00000498814 DDX54Q8TDD1 881 aaKnown RBP20.86■□□□□ 0.93
CPNE1-228ENST00000498814 SPG7Q9UQ90 795 aa20.86■□□□□ 0.93
CPNE1-228ENST00000498814 PCDH11XQ9BZA7 1347 aa20.85■□□□□ 0.93
CPNE1-228ENST00000498814 PCDH11YQ9BZA8 1340 aa20.85■□□□□ 0.93
CPNE1-228ENST00000498814 HMOX1P09601 288 aa20.85■□□□□ 0.93
CPNE1-228ENST00000498814 KAT6BQ8WYB5 2073 aa20.84■□□□□ 0.93
CPNE1-228ENST00000498814 ANP32CO43423 234 aa20.83■□□□□ 0.93
CPNE1-228ENST00000498814 AMOTQ4VCS5 1084 aa20.83■□□□□ 0.93
CPNE1-228ENST00000498814 TNS1Q9HBL0 1735 aaKnown RBP20.83■□□□□ 0.92
CPNE1-228ENST00000498814 CYP27B1O15528 508 aa20.82■□□□□ 0.92
CPNE1-228ENST00000498814 PLEKHO1Q53GL0 409 aaPredicted RBP20.82■□□□□ 0.92
CPNE1-228ENST00000498814 TRIM37O94972 964 aa20.81■□□□□ 0.92
CPNE1-228ENST00000498814 U2AF1L5P0DN76 240 aaPredicted RBP20.81■□□□□ 0.92
CPNE1-228ENST00000498814 U2AF1Q01081 240 aaKnown RBP eCLIP20.81■□□□□ 0.924e-24■■□□□ 12.7
CPNE1-228ENST00000498814 NHSQ6T4R5 1651 aa20.8■□□□□ 0.92
CPNE1-228ENST00000498814 DOT1LQ8TEK3 1739 aa20.78■□□□□ 0.92
CPNE1-228ENST00000498814 FCHSD2O94868 740 aa20.78■□□□□ 0.92
CPNE1-228ENST00000498814 PHKG2P15735 406 aa20.78■□□□□ 0.92
CPNE1-228ENST00000498814 SF3B2Q13435 895 aaKnown RBP20.78■□□□□ 0.92
CPNE1-228ENST00000498814 NKX1-1Q15270 411 aaPredicted RBP20.78■□□□□ 0.92
CPNE1-228ENST00000498814 IFNL2Q8IZJ0 200 aa20.78■□□□□ 0.92
CPNE1-228ENST00000498814 BCL11BQ9C0K0 894 aaPredicted RBP20.78■□□□□ 0.92
CPNE1-228ENST00000498814 RSPH6AQ9H0K4 717 aa20.78■□□□□ 0.92
CPNE1-228ENST00000498814 ZNF530Q6P9A1 599 aaPredicted RBP20.76■□□□□ 0.91
CPNE1-228ENST00000498814 PRKAR2BP31323 418 aa20.75■□□□□ 0.91
CPNE1-228ENST00000498814 ACSBG1Q96GR2 724 aa20.75■□□□□ 0.91
CPNE1-228ENST00000498814 ITGB4P16144 1822 aa20.75■□□□□ 0.91
CPNE1-228ENST00000498814 TOGARAM1Q9Y4F4 1720 aa20.75■□□□□ 0.91
CPNE1-228ENST00000498814 KCNQ2O43526 872 aa20.74■□□□□ 0.91
CPNE1-228ENST00000498814 BTAF1O14981 1849 aa20.74■□□□□ 0.91
CPNE1-228ENST00000498814 HSP90AB1P08238 724 aaKnown RBP20.73■□□□□ 0.91
CPNE1-228ENST00000498814 MTHFSDQ2M296 383 aaKnown RBP20.73■□□□□ 0.91
CPNE1-228ENST00000498814 C1orf141Q5JVX7 400 aa20.73■□□□□ 0.91
CPNE1-228ENST00000498814 PTF1AQ7RTS3 328 aa20.73■□□□□ 0.91
CPNE1-228ENST00000498814 VIRMAQ69YN4 1812 aaKnown RBP20.72■□□□□ 0.91
CPNE1-228ENST00000498814 APBA3O96018 575 aa20.72■□□□□ 0.91
CPNE1-228ENST00000498814 BAG6P46379 1132 aa20.72■□□□□ 0.91
CPNE1-228ENST00000498814 PRIM1P49642 420 aaKnown RBP20.72■□□□□ 0.91
CPNE1-228ENST00000498814 RGPD3A6NKT7 1758 aaPredicted RBP20.72■□□□□ 0.91
CPNE1-228ENST00000498814 RGPD4Q7Z3J3 1758 aa20.72■□□□□ 0.91
CPNE1-228ENST00000498814 AKAP4Q5JQC9 854 aa20.71■□□□□ 0.91
CPNE1-228ENST00000498814 DCAF5Q96JK2 942 aa20.71■□□□□ 0.91
CPNE1-228ENST00000498814 PHACTR3Q96KR7 559 aa20.71■□□□□ 0.91
CPNE1-228ENST00000498814 PNNQ9H307 717 aaKnown RBP20.71■□□□□ 0.91
CPNE1-228ENST00000498814 SCN11AQ9UI33 1791 aa20.71■□□□□ 0.91
CPNE1-228ENST00000498814 DEFB132Q7Z7B7 95 aa20.7■□□□□ 0.9
CPNE1-228ENST00000498814 GAS2L2Q8NHY3 880 aa20.7■□□□□ 0.9
CPNE1-228ENST00000498814 WDR43Q15061 677 aaKnown RBP eCLIP20.69■□□□□ 0.9
CPNE1-228ENST00000498814 CCDC184Q52MB2 194 aa20.69■□□□□ 0.9
CPNE1-228ENST00000498814 SYTL4Q96C24 671 aaPredicted RBP20.69■□□□□ 0.9
CPNE1-228ENST00000498814 PLEKHF1Q96S99 279 aa20.69■□□□□ 0.9
CPNE1-228ENST00000498814 PLSCR1O15162 318 aa20.68■□□□□ 0.9
CPNE1-228ENST00000498814 KDM6AO15550 1401 aaPredicted RBP20.68■□□□□ 0.9
CPNE1-228ENST00000498814 ADAMTS7Q9UKP4 1686 aa20.67■□□□□ 0.9
CPNE1-228ENST00000498814 ERVV-2B6SEH9 535 aa20.67■□□□□ 0.9
CPNE1-228ENST00000498814 NEFMP07197 916 aa20.67■□□□□ 0.9
CPNE1-228ENST00000498814 EN1Q05925 392 aaPredicted RBP20.67■□□□□ 0.9
CPNE1-228ENST00000498814 CAMKK2Q96RR4 588 aa20.67■□□□□ 0.9
CPNE1-228ENST00000498814 MPRIPQ6WCQ1 1025 aa20.66■□□□□ 0.9
CPNE1-228ENST00000498814 ADAMTS8Q9UP79 889 aa20.66■□□□□ 0.9
CPNE1-228ENST00000498814 DLG5Q8TDM6 1919 aa20.65■□□□□ 0.9
CPNE1-228ENST00000498814 MAP3K5Q99683 1374 aa20.65■□□□□ 0.9
CPNE1-228ENST00000498814 MRS2Q9HD23 443 aa20.65■□□□□ 0.9
CPNE1-228ENST00000498814 RREB1Q92766 1687 aa20.64■□□□□ 0.9
CPNE1-228ENST00000498814 GNAT3A8MTJ3 354 aa20.64■□□□□ 0.89
CPNE1-228ENST00000498814 MAPK8IP3Q9UPT6 1336 aa20.63■□□□□ 0.89
CPNE1-228ENST00000498814 EZH2Q15910 746 aaKnown RBP20.63■□□□□ 0.89
CPNE1-228ENST00000498814 DIEXFQ68CQ4 756 aaKnown RBP20.63■□□□□ 0.89
CPNE1-228ENST00000498814 PIGBQ92521 554 aa20.63■□□□□ 0.89
CPNE1-228ENST00000498814 TMOD3Q9NYL9 352 aa20.63■□□□□ 0.89
CPNE1-228ENST00000498814 LY75O60449 1722 aa20.63■□□□□ 0.89
CPNE1-228ENST00000498814 RNMTO43148 476 aaKnown RBP20.62■□□□□ 0.89
CPNE1-228ENST00000498814 PNISRQ8TF01 805 aaKnown RBP20.62■□□□□ 0.89
CPNE1-228ENST00000498814 LGR6Q9HBX8 967 aa20.62■□□□□ 0.89
CPNE1-228ENST00000498814 CABP4P57796 275 aa20.61■□□□□ 0.89
CPNE1-228ENST00000498814 HTATSF1O43719 755 aaKnown RBP20.6■□□□□ 0.89
CPNE1-228ENST00000498814 RUNDC1Q96C34 613 aa20.6■□□□□ 0.89
CPNE1-228ENST00000498814 MRC1P22897 1456 aa20.6■□□□□ 0.89
CPNE1-228ENST00000498814 NUP188Q5SRE5 1749 aa20.59■□□□□ 0.89
CPNE1-228ENST00000498814 NFE2L2Q16236 605 aa20.59■□□□□ 0.89
CPNE1-228ENST00000498814 PROM2Q8N271 834 aa20.59■□□□□ 0.89
CPNE1-228ENST00000498814 IL17REQ8NFR9 667 aa20.59■□□□□ 0.89
CPNE1-228ENST00000498814 TXNRD1Q16881 649 aa20.58■□□□□ 0.89
CPNE1-228ENST00000498814 CCDC146Q8IYE0 955 aa20.58■□□□□ 0.89
CPNE1-228ENST00000498814 NFATC2IPQ8NCF5 419 aa20.58■□□□□ 0.89
CPNE1-228ENST00000498814 SMARCC1Q92922 1105 aaPredicted RBP20.58■□□□□ 0.89
CPNE1-228ENST00000498814 SLC52A2Q9HAB3 445 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms