RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 AKAP4Q5JQC9 854 aa10.87□□□□□ -0.67
SF3A1-210ENST00000498259 CABLES1Q8TDN4 633 aa10.87□□□□□ -0.67
SF3A1-210ENST00000498259 MAP3K5Q99683 1374 aa10.87□□□□□ -0.67
SF3A1-210ENST00000498259 AHDC1Q5TGY3 1603 aaPredicted RBP10.87□□□□□ -0.67
SF3A1-210ENST00000498259 ZNF853P0CG23 659 aa10.86□□□□□ -0.67
SF3A1-210ENST00000498259 PDE3AQ14432 1141 aa10.86□□□□□ -0.67
SF3A1-210ENST00000498259 CHMP4BQ9H444 224 aaKnown RBP10.86□□□□□ -0.67
SF3A1-210ENST00000498259 SPINK5Q9NQ38 1064 aaPredicted RBP10.86□□□□□ -0.67
SF3A1-210ENST00000498259 AXIN2Q9Y2T1 843 aa10.86□□□□□ -0.67
SF3A1-210ENST00000498259 WDR17Q8IZU2 1322 aa10.85□□□□□ -0.67
SF3A1-210ENST00000498259 NCAPD2Q15021 1401 aa10.85□□□□□ -0.67
SF3A1-210ENST00000498259 EXOSC9Q06265 439 aaKnown RBP10.85□□□□□ -0.67
SF3A1-210ENST00000498259 TOM1L2Q6ZVM7 507 aa10.85□□□□□ -0.67
SF3A1-210ENST00000498259 FAM208AQ9UK61 1670 aaKnown RBP10.85□□□□□ -0.67
SF3A1-210ENST00000498259 ROBO1Q9Y6N7 1651 aa10.85□□□□□ -0.67
SF3A1-210ENST00000498259 KIF16BQ96L93 1317 aa10.84□□□□□ -0.67
SF3A1-210ENST00000498259 CHL1O00533 1208 aa10.84□□□□□ -0.67
SF3A1-210ENST00000498259 RARSP54136 660 aaKnown RBP10.84□□□□□ -0.67
SF3A1-210ENST00000498259 PIP4K2BP78356 416 aa10.84□□□□□ -0.67
SF3A1-210ENST00000498259 TEFQ10587 303 aa10.84□□□□□ -0.67
SF3A1-210ENST00000498259 TAF7Q15545 349 aaPredicted RBP10.84□□□□□ -0.67
SF3A1-210ENST00000498259 CHRNA2Q15822 529 aa10.84□□□□□ -0.67
SF3A1-210ENST00000498259 ZNF530Q6P9A1 599 aaPredicted RBP10.84□□□□□ -0.67
SF3A1-210ENST00000498259 TSR2Q969E8 191 aaKnown RBP10.84□□□□□ -0.67
SF3A1-210ENST00000498259 MCM10Q7L590 875 aa10.83□□□□□ -0.68
SF3A1-210ENST00000498259 USHBP1Q8N6Y0 703 aa10.83□□□□□ -0.68
SF3A1-210ENST00000498259 CERKQ8TCT0 537 aa10.83□□□□□ -0.68
SF3A1-210ENST00000498259 CARD10Q9BWT7 1032 aa10.83□□□□□ -0.68
SF3A1-210ENST00000498259 MBIPQ9NS73 344 aa10.83□□□□□ -0.68
SF3A1-210ENST00000498259 SMC4Q9NTJ3 1288 aa10.83□□□□□ -0.68
SF3A1-210ENST00000498259 TSPYL4Q9UJ04 414 aa10.83□□□□□ -0.68
SF3A1-210ENST00000498259 OVOS2A0A0G2JMS6 1433 aa10.83□□□□□ -0.68
SF3A1-210ENST00000498259 FAM83GA6ND36 823 aa10.82□□□□□ -0.68
SF3A1-210ENST00000498259 BRPF1P55201 1214 aaPredicted RBP10.82□□□□□ -0.68
SF3A1-210ENST00000498259 TWISTNBQ3B726 338 aaPredicted RBP10.82□□□□□ -0.68
SF3A1-210ENST00000498259 ZKSCAN2Q63HK3 967 aa10.82□□□□□ -0.68
SF3A1-210ENST00000498259 IFNL2Q8IZJ0 200 aa10.82□□□□□ -0.68
SF3A1-210ENST00000498259 CCDC136Q96JN2 1154 aa10.82□□□□□ -0.68
SF3A1-210ENST00000498259 IRX6P78412 446 aaPredicted RBP10.81□□□□□ -0.68
SF3A1-210ENST00000498259 FTSJ3Q8IY81 847 aaKnown RBP10.81□□□□□ -0.68
SF3A1-210ENST00000498259 ARHGAP45Q92619 1136 aa10.81□□□□□ -0.68
SF3A1-210ENST00000498259 FRAT1Q92837 279 aaPredicted RBP10.81□□□□□ -0.68
SF3A1-210ENST00000498259 THUMPD2Q9BTF0 503 aaKnown RBP10.81□□□□□ -0.68
SF3A1-210ENST00000498259 CDCA7Q9BWT1 371 aaPredicted RBP10.81□□□□□ -0.68
SF3A1-210ENST00000498259 BCAR3O75815 825 aa10.8□□□□□ -0.68
SF3A1-210ENST00000498259 IL2RBP14784 551 aa10.8□□□□□ -0.68
SF3A1-210ENST00000498259 DCTN1Q14203 1278 aa10.8□□□□□ -0.68
SF3A1-210ENST00000498259 DCAF5Q96JK2 942 aa10.8□□□□□ -0.68
SF3A1-210ENST00000498259 STRN4Q9NRL3 753 aa10.8□□□□□ -0.68
SF3A1-210ENST00000498259 COL22A1Q8NFW1 1626 aaPredicted RBP10.8□□□□□ -0.68
SF3A1-210ENST00000498259 CAMTA1Q9Y6Y1 1673 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 PHLPP1O60346 1717 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 CRYBG1Q9Y4K1 1723 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 CRB1P82279 1406 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 VAMP4O75379 141 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 HOXB7P09629 217 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 STK31Q9BXU1 1019 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 BTG4Q9NY30 223 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 THRAP3Q9Y2W1 955 aaKnown RBP10.79□□□□□ -0.68
SF3A1-210ENST00000498259 COL5A2P05997 1499 aaPredicted RBP10.79□□□□□ -0.68
SF3A1-210ENST00000498259 PCDH11XQ9BZA7 1347 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 PCDH11YQ9BZA8 1340 aa10.79□□□□□ -0.68
SF3A1-210ENST00000498259 CEMIPQ8WUJ3 1361 aa10.78□□□□□ -0.68
SF3A1-210ENST00000498259 JCADQ9P266 1359 aa10.78□□□□□ -0.68
SF3A1-210ENST00000498259 COL18A1P39060 1754 aa10.78□□□□□ -0.68
SF3A1-210ENST00000498259 BTBD11A6QL63 1104 aa10.78□□□□□ -0.68
SF3A1-210ENST00000498259 CCDC30Q5VVM6 783 aa10.78□□□□□ -0.68
SF3A1-210ENST00000498259 DZIP1LQ8IYY4 767 aaKnown RBP10.78□□□□□ -0.68
SF3A1-210ENST00000498259 IL17REQ8NFR9 667 aa10.78□□□□□ -0.68
SF3A1-210ENST00000498259 ZCRB1Q8TBF4 217 aaKnown RBP10.78□□□□□ -0.68
SF3A1-210ENST00000498259 API5Q9BZZ5 524 aaKnown RBP10.78□□□□□ -0.68
SF3A1-210ENST00000498259 SPATA31A6Q5VVP1 1343 aa10.78□□□□□ -0.68
SF3A1-210ENST00000498259 COL14A1Q05707 1796 aaKnown RBP10.77□□□□□ -0.68
SF3A1-210ENST00000498259 LMO7Q8WWI1 1683 aa10.77□□□□□ -0.69
SF3A1-210ENST00000498259 RNMTO43148 476 aaKnown RBP10.77□□□□□ -0.69
SF3A1-210ENST00000498259 PLIN1O60240 522 aa10.77□□□□□ -0.69
SF3A1-210ENST00000498259 ATF7IPQ6VMQ6 1270 aa10.77□□□□□ -0.69
SF3A1-210ENST00000498259 SSH1Q8WYL5 1049 aa10.77□□□□□ -0.69
SF3A1-210ENST00000498259 DLG5Q8TDM6 1919 aa10.77□□□□□ -0.69
SF3A1-210ENST00000498259 PHKG2P15735 406 aa10.76□□□□□ -0.69
SF3A1-210ENST00000498259 DDX19BQ9UMR2 479 aa10.76□□□□□ -0.69
SF3A1-210ENST00000498259 PTPRCP08575 1304 aa10.76□□□□□ -0.69
SF3A1-210ENST00000498259 ERVV-2B6SEH9 535 aa10.75□□□□□ -0.69
SF3A1-210ENST00000498259 LARP1Q6PKG0 1096 aaKnown RBP10.75□□□□□ -0.69
SF3A1-210ENST00000498259 MPRIPQ6WCQ1 1025 aa10.75□□□□□ -0.69
SF3A1-210ENST00000498259 C8orf58Q8NAV2 365 aa10.75□□□□□ -0.69
SF3A1-210ENST00000498259 NOB1Q9ULX3 412 aaKnown RBP10.75□□□□□ -0.69
SF3A1-210ENST00000498259 COL16A1Q07092 1604 aaPredicted RBP10.74□□□□□ -0.69
SF3A1-210ENST00000498259 ELL2O00472 640 aaPredicted RBP10.74□□□□□ -0.69
SF3A1-210ENST00000498259 ADAMTS2O95450 1211 aa10.74□□□□□ -0.69
SF3A1-210ENST00000498259 CABP4P57796 275 aa10.74□□□□□ -0.69
SF3A1-210ENST00000498259 TTC5Q8N0Z6 440 aa10.74□□□□□ -0.69
SF3A1-210ENST00000498259 EXOC6Q8TAG9 804 aa10.74□□□□□ -0.69
SF3A1-210ENST00000498259 CRBNQ96SW2 442 aa10.74□□□□□ -0.69
SF3A1-210ENST00000498259 BCL2L13Q9BXK5 485 aa10.74□□□□□ -0.69
SF3A1-210ENST00000498259 SLC52A2Q9HAB3 445 aa10.74□□□□□ -0.69
SF3A1-210ENST00000498259 ABCA3Q99758 1704 aa10.74□□□□□ -0.69
SF3A1-210ENST00000498259 RGPD5Q99666 1765 aa10.73□□□□□ -0.69
SF3A1-210ENST00000498259 NUTM2BA6NNL0 878 aaPredicted RBP10.73□□□□□ -0.69
SF3A1-210ENST00000498259 NUTM2EB1AL46 878 aaPredicted RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms