RNA–Protein interactions for RNA: ENST00000497018.1

UBR4-217, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 183 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-217ENST00000497018 TICAM2Q86XR7 235 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 FAM9AQ8IZU1 332 aaPredicted RBP2.72□□□□□ -1.97
UBR4-217ENST00000497018 RDH13Q8NBN7 331 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 PLPP7Q8NBV4 271 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 GTF3C2Q8WUA4 911 aaPredicted RBP2.72□□□□□ -1.97
UBR4-217ENST00000497018 TSC1Q92574 1164 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 TATDN2Q93075 761 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 VTI1AQ96AJ9 217 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 PRIMPOLQ96LW4 560 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 OCSTAMPQ9BR26 566 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 ACBD3Q9H3P7 528 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 PRDM16Q9HAZ2 1276 aa2.72□□□□□ -1.97
UBR4-217ENST00000497018 METTL14Q9HCE5 456 aaKnown RBP2.72□□□□□ -1.97
UBR4-217ENST00000497018 IQSEC3Q9UPP2 1182 aaPredicted RBP2.72□□□□□ -1.97
UBR4-217ENST00000497018 PRPF40AO75400 957 aaKnown RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 PARNO95453 639 aaKnown RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 FMNL1O95466 1100 aaPredicted RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 FGRP09769 529 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 ATP2B1P20020 1258 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 WEE1P30291 646 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 TNNI2P48788 182 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 DAB2P98082 770 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 FKBP5Q13451 457 aaPredicted RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 GRIPAP1Q4V328 841 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 PPP4R3BQ5MIZ7 849 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 CCDC181Q5TID7 509 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 PPP1R18Q6NYC8 613 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 LYPD8Q6UX82 237 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 CAPN12Q6ZSI9 719 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 RPUSD2Q8IZ73 545 aaKnown RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 HELQQ8TDG4 1101 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 SYMPKQ92797 1274 aaKnown RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 ZNF594Q96JF6 807 aaPredicted RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 FAM161BQ96MY7 647 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 PURBQ96QR8 312 aaKnown RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 PSMD1Q99460 953 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 CCSER2Q9H7U1 834 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 ZSWIM6Q9HCJ5 1215 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 DNAAF2Q9NVR5 837 aaKnown RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 CEP126Q9P2H0 1117 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 DMGDHQ9UI17 866 aaKnown RBP2.71□□□□□ -1.98
UBR4-217ENST00000497018 FKBPLQ9UIM3 349 aa2.71□□□□□ -1.98
UBR4-217ENST00000497018 TRIM6-TRIM34B2RNG4 842 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 C6orf229H3BNL8 230 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 ENPP3O14638 875 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 TPD52L2O43399 206 aaKnown RBP2.7□□□□□ -1.98
UBR4-217ENST00000497018 PTPREP23469 700 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 GTF2F1P35269 517 aaKnown RBP eCLIP2.7□□□□□ -1.98
UBR4-217ENST00000497018 SEC13P55735 322 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 IGBP1P78318 339 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 FKBP4Q02790 459 aaKnown RBP eCLIP2.7□□□□□ -1.98
UBR4-217ENST00000497018 SERINC3Q13530 473 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 EML3Q32P44 896 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 MAP7D1Q3KQU3 841 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 RETREG3Q86VR2 466 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 TRIM50Q86XT4 487 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 TMEM87AQ8NBN3 555 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 RNF34Q969K3 372 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 FAM129BQ96TA1 746 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 DUSP9Q99956 384 aaKnown RBP2.7□□□□□ -1.98
UBR4-217ENST00000497018 OSBPL2Q9H1P3 480 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 CAPN10Q9HC96 672 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 PARP2Q9UGN5 583 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 METRNQ9UJH8 293 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 PNMA3Q9UL41 463 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 COLQQ9Y215 455 aaPredicted RBP2.7□□□□□ -1.98
UBR4-217ENST00000497018 GTF3C5Q9Y5Q8 519 aaPredicted RBP2.7□□□□□ -1.98
UBR4-217ENST00000497018 LTBP4Q8N2S1 1624 aa2.7□□□□□ -1.98
UBR4-217ENST00000497018 PCF11O94913 1555 aaKnown RBP2.7□□□□□ -1.98
UBR4-217ENST00000497018 hCG_2014768A0A024R1R8 64 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 CCDC194A0A1B0GVG4 234 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 POTEFA5A3E0 1075 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 SFI1A8K8P3 1242 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 SMAPO00193 183 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 GPR182O15218 404 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 LDHBP07195 334 aaKnown RBP2.69□□□□□ -1.98
UBR4-217ENST00000497018 HSD3B2P26439 372 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 ZNF76P36508 570 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 ATP1A2P50993 1020 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 FUT2Q10981 343 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 PLEKHG6Q3KR16 790 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 TSGA10IPQ3SY00 556 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 SLFNL1Q499Z3 407 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 MCF2L2Q86YR7 1114 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 EXOC8Q8IYI6 725 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 COL26A1Q96A83 441 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 CCDC85AQ96PX6 553 aaPredicted RBP2.69□□□□□ -1.98
UBR4-217ENST00000497018 SETDB2Q96T68 719 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 PRKD2Q9BZL6 878 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 BCL11AQ9H165 835 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 IRF2BPLQ9H1B7 796 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 ZSWIM4Q9H7M6 989 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 BCL2L12Q9HB09 334 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 BCCIPQ9P287 314 aaKnown RBP eCLIP2.69□□□□□ -1.98
UBR4-217ENST00000497018 EPB41L3Q9Y2J2 1087 aaPredicted RBP2.69□□□□□ -1.98
UBR4-217ENST00000497018 FAN1Q9Y2M0 1017 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 NOP58Q9Y2X3 529 aaKnown RBP2.69□□□□□ -1.98
UBR4-217ENST00000497018 COL4A3BPQ9Y5P4 624 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 EMILIN1Q9Y6C2 1016 aa2.69□□□□□ -1.98
UBR4-217ENST00000497018 MRPL42Q9Y6G3 142 aaKnown RBP2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 218.4 ms