RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 WASHC2AQ641Q2 1341 aa45.56■■■■■ 4.88
CBX4-203ENST00000494546 KNSTRNQ9Y448 316 aa45.56■■■■■ 4.88
CBX4-203ENST00000494546 MAP2P11137 1827 aaKnown RBP45.56■■■■■ 4.88
CBX4-203ENST00000494546 NSD2O96028 1365 aa45.56■■■■■ 4.88
CBX4-203ENST00000494546 SRCAPQ6ZRS2 3230 aa45.54■■■■■ 4.88
CBX4-203ENST00000494546 TATP17735 454 aaPredicted RBP45.53■■■■■ 4.88
CBX4-203ENST00000494546 PROM2Q8N271 834 aa45.51■■■■■ 4.88
CBX4-203ENST00000494546 TXNRD1Q16881 649 aa45.48■■■■■ 4.87
CBX4-203ENST00000494546 MORC1Q86VD1 984 aa45.48■■■■■ 4.87
CBX4-203ENST00000494546 SHANK3Q9BYB0 1731 aa45.46■■■■■ 4.87
CBX4-203ENST00000494546 KAT6BQ8WYB5 2073 aa45.45■■■■■ 4.87
CBX4-203ENST00000494546 SYTL4Q96C24 671 aaPredicted RBP45.43■■■■■ 4.86
CBX4-203ENST00000494546 EYA1Q99502 592 aa45.42■■■■■ 4.86
CBX4-203ENST00000494546 LRP5O75197 1615 aa45.41■■■■■ 4.86
CBX4-203ENST00000494546 ANO8Q9HCE9 1232 aaPredicted RBP45.41■■■■■ 4.86
CBX4-203ENST00000494546 BTAF1O14981 1849 aa45.4■■■■■ 4.86
CBX4-203ENST00000494546 PRIM1P49642 420 aaKnown RBP45.39■■■■■ 4.86
CBX4-203ENST00000494546 EIF4A2Q14240 407 aaKnown RBP45.39■■■■■ 4.86
CBX4-203ENST00000494546 NCAPD2Q15021 1401 aa45.37■■■■■ 4.85
CBX4-203ENST00000494546 PCDH11XQ9BZA7 1347 aa45.37■■■■■ 4.85
CBX4-203ENST00000494546 PCDH11YQ9BZA8 1340 aa45.37■■■■■ 4.85
CBX4-203ENST00000494546 AMER1Q5JTC6 1135 aaPredicted RBP45.37■■■■■ 4.85
CBX4-203ENST00000494546 DOT1LQ8TEK3 1739 aa45.35■■■■■ 4.85
CBX4-203ENST00000494546 STK32BQ9NY57 414 aa45.3■■■■■ 4.84
CBX4-203ENST00000494546 PER1O15534 1290 aaPredicted RBP45.28■■■■■ 4.84
CBX4-203ENST00000494546 CYP27B1O15528 508 aa45.27■■■■■ 4.84
CBX4-203ENST00000494546 SPG7Q9UQ90 795 aa45.26■■■■■ 4.84
CBX4-203ENST00000494546 CC2D1BQ5T0F9 858 aaKnown RBP45.24■■■■■ 4.83
CBX4-203ENST00000494546 PKD1L3Q7Z443 1732 aa45.23■■■■■ 4.83
CBX4-203ENST00000494546 SLC15A2Q16348 729 aa45.23■■■■■ 4.83
CBX4-203ENST00000494546 LRRC4BQ9NT99 713 aa45.21■■■■■ 4.83
CBX4-203ENST00000494546 IGSF1Q8N6C5 1336 aa45.21■■■■■ 4.83
CBX4-203ENST00000494546 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP45.18■■■■■ 4.82
CBX4-203ENST00000494546 CNGB1Q14028 1251 aaPredicted RBP45.16■■■■■ 4.82
CBX4-203ENST00000494546 SLC27A3Q5K4L6 730 aa45.16■■■■■ 4.82
CBX4-203ENST00000494546 PDGFDQ9GZP0 370 aaPredicted RBP45.16■■■■■ 4.82
CBX4-203ENST00000494546 SPON1Q9HCB6 807 aa45.15■■■■■ 4.82
CBX4-203ENST00000494546 PAPPAQ13219 1627 aa45.13■■■■■ 4.82
CBX4-203ENST00000494546 MPRIPQ6WCQ1 1025 aa45.13■■■■■ 4.82
CBX4-203ENST00000494546 KCNQ4P56696 695 aa45.12■■■■■ 4.81
CBX4-203ENST00000494546 MTHFSP49914 203 aa45.11■■■■■ 4.81
CBX4-203ENST00000494546 NKX1-1Q15270 411 aaPredicted RBP45.11■■■■■ 4.81
CBX4-203ENST00000494546 CASZ1Q86V15 1759 aa45.1■■■■■ 4.81
CBX4-203ENST00000494546 ZNF827Q17R98 1081 aa45.1■■■■■ 4.81
CBX4-203ENST00000494546 IFNL2Q8IZJ0 200 aa45.09■■■■■ 4.81
CBX4-203ENST00000494546 TOGARAM1Q9Y4F4 1720 aa45.07■■■■■ 4.81
CBX4-203ENST00000494546 ZBTB7AO95365 584 aa45.07■■■■■ 4.81
CBX4-203ENST00000494546 PHKG2P15735 406 aa45.07■■■■■ 4.81
CBX4-203ENST00000494546 IL13P35225 146 aa45.07■■■■■ 4.81
CBX4-203ENST00000494546 CCNL1Q9UK58 526 aaPredicted RBP45.07■■■■■ 4.81
CBX4-203ENST00000494546 AEBP1Q8IUX7 1158 aa45.06■■■■■ 4.8
CBX4-203ENST00000494546 LY75O60449 1722 aa45.06■■■■■ 4.8
CBX4-203ENST00000494546 PLEKHG2Q9H7P9 1386 aa45.06■■■■■ 4.8
CBX4-203ENST00000494546 NPC1L1Q9UHC9 1359 aa45.06■■■■■ 4.8
CBX4-203ENST00000494546 PLEKHO1Q53GL0 409 aaPredicted RBP45.02■■■■■ 4.8
CBX4-203ENST00000494546 SULT6B1Q6IMI4 303 aa45.02■■■■■ 4.8
CBX4-203ENST00000494546 AKT1S1Q96B36 256 aa45.02■■■■■ 4.8
CBX4-203ENST00000494546 PPP1R1BQ9UD71 204 aaPredicted RBP45.02■■■■■ 4.8
CBX4-203ENST00000494546 PALLDQ8WX93 1383 aa44.99■■■■■ 4.79
CBX4-203ENST00000494546 PIGBQ92521 554 aa44.99■■■■■ 4.79
CBX4-203ENST00000494546 ATF5Q9Y2D1 282 aaPredicted RBP44.99■■■■■ 4.79
CBX4-203ENST00000494546 ITGB4P16144 1822 aa44.98■■■■■ 4.79
CBX4-203ENST00000494546 AMOTQ4VCS5 1084 aa44.96■■■■■ 4.79
CBX4-203ENST00000494546 TMOD3Q9NYL9 352 aa44.96■■■■■ 4.79
CBX4-203ENST00000494546 ZNF530Q6P9A1 599 aaPredicted RBP44.95■■■■■ 4.79
CBX4-203ENST00000494546 SMARCC1Q92922 1105 aaPredicted RBP44.95■■■■■ 4.79
CBX4-203ENST00000494546 TFCP2L1Q9NZI6 479 aa44.94■■■■■ 4.78
CBX4-203ENST00000494546 KDRP35968 1356 aa44.93■■■■■ 4.78
CBX4-203ENST00000494546 MTFR1LQ9H019 292 aa44.92■■■■■ 4.78
CBX4-203ENST00000494546 DIAPH1O60610 1272 aaKnown RBP44.91■■■■■ 4.78
CBX4-203ENST00000494546 HSP90AB1P08238 724 aaKnown RBP44.9■■■■■ 4.78
CBX4-203ENST00000494546 PNPLA7Q6ZV29 1317 aa44.87■■■■■ 4.77
CBX4-203ENST00000494546 PTGER2P43116 358 aa44.87■■■■■ 4.77
CBX4-203ENST00000494546 DCAF5Q96JK2 942 aa44.87■■■■■ 4.77
CBX4-203ENST00000494546 HMOX1P09601 288 aa44.86■■■■■ 4.77
CBX4-203ENST00000494546 C1orf141Q5JVX7 400 aa44.86■■■■■ 4.77
CBX4-203ENST00000494546 ASAP1Q9ULH1 1129 aa44.83■■■■■ 4.77
CBX4-203ENST00000494546 ERVV-2B6SEH9 535 aa44.82■■■■■ 4.77
CBX4-203ENST00000494546 QSER1Q2KHR3 1735 aa44.81■■■■■ 4.76
CBX4-203ENST00000494546 C5P01031 1676 aa44.8■■■■■ 4.76
CBX4-203ENST00000494546 HMGB2P26583 209 aaKnown RBP44.8■■■■■ 4.76
CBX4-203ENST00000494546 KDM6AO15550 1401 aaPredicted RBP44.8■■■■■ 4.76
CBX4-203ENST00000494546 TUBGCP6Q96RT7 1819 aa44.79■■■■■ 4.76
CBX4-203ENST00000494546 COL3A1P02461 1466 aaPredicted RBP44.78■■■■■ 4.76
CBX4-203ENST00000494546 LOC102724428A0A0B4J2F2 783 aa44.77■■■■■ 4.76
CBX4-203ENST00000494546 SIK1P57059 783 aa44.77■■■■■ 4.76
CBX4-203ENST00000494546 SLC16A10Q8TF71 515 aa44.77■■■■■ 4.76
CBX4-203ENST00000494546 ATG3Q9NT62 314 aa44.77■■■■■ 4.76
CBX4-203ENST00000494546 CABP4P57796 275 aa44.76■■■■■ 4.76
CBX4-203ENST00000494546 SGIP1Q9BQI5 828 aa44.76■■■■■ 4.76
CBX4-203ENST00000494546 U2SURPO15042 1029 aaKnown RBP44.75■■■■■ 4.75
CBX4-203ENST00000494546 MSH5O43196 834 aa44.75■■■■■ 4.75
CBX4-203ENST00000494546 TAF1LQ8IZX4 1826 aa44.73■■■■■ 4.75
CBX4-203ENST00000494546 COL23A1Q86Y22 540 aaPredicted RBP44.71■■■■■ 4.75
CBX4-203ENST00000494546 CFAP53Q96M91 514 aa44.71■■■■■ 4.75
CBX4-203ENST00000494546 ATP6V1AP38606 617 aa44.69■■■■■ 4.74
CBX4-203ENST00000494546 AKAP4Q5JQC9 854 aa44.69■■■■■ 4.74
CBX4-203ENST00000494546 AK7Q96M32 723 aa44.69■■■■■ 4.74
CBX4-203ENST00000494546 C4BP0C0L5 1744 aa44.68■■■■■ 4.74
CBX4-203ENST00000494546 PPP2R1AP30153 589 aa44.68■■■■■ 4.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms