RNA–Protein interactions for RNA: ENST00000494255.5

TRA2A-209, Transcript of transformer 2 alpha homolog, humanhuman

TSL 1 (best)

Gene TRA2A, Length 1,653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-209ENST00000494255 SULT6B1Q6IMI4 303 aa16.73■□□□□ 0.27
TRA2A-209ENST00000494255 MARCH10Q8NA82 808 aaPredicted RBP16.73■□□□□ 0.27
TRA2A-209ENST00000494255 DDX54Q8TDD1 881 aaKnown RBP16.73■□□□□ 0.27
TRA2A-209ENST00000494255 UPF1Q92900 1129 aaKnown RBP eCLIP16.73■□□□□ 0.27
TRA2A-209ENST00000494255 SPG7Q9UQ90 795 aa16.72■□□□□ 0.27
TRA2A-209ENST00000494255 PKD1L3Q7Z443 1732 aa16.71■□□□□ 0.27
TRA2A-209ENST00000494255 SF3B2Q13435 895 aaKnown RBP16.71■□□□□ 0.27
TRA2A-209ENST00000494255 CCDC125Q86Z20 511 aa16.71■□□□□ 0.27
TRA2A-209ENST00000494255 AEBP1Q8IUX7 1158 aa16.71■□□□□ 0.27
TRA2A-209ENST00000494255 PCDH11XQ9BZA7 1347 aa16.71■□□□□ 0.27
TRA2A-209ENST00000494255 PCDH11YQ9BZA8 1340 aa16.71■□□□□ 0.27
TRA2A-209ENST00000494255 KDRP35968 1356 aa16.71■□□□□ 0.27
TRA2A-209ENST00000494255 PLEKHG2Q9H7P9 1386 aa16.71■□□□□ 0.27
TRA2A-209ENST00000494255 ANP32CO43423 234 aa16.7■□□□□ 0.26
TRA2A-209ENST00000494255 HMOX1P09601 288 aa16.7■□□□□ 0.26
TRA2A-209ENST00000494255 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.7■□□□□ 0.267e-10■■■■□ 23.6
TRA2A-209ENST00000494255 SHANK3Q9BYB0 1731 aa16.7■□□□□ 0.26
TRA2A-209ENST00000494255 BCL9O00512 1426 aa16.69■□□□□ 0.26
TRA2A-209ENST00000494255 PLEKHO1Q53GL0 409 aaPredicted RBP16.69■□□□□ 0.26
TRA2A-209ENST00000494255 TRIM37O94972 964 aa16.68■□□□□ 0.26
TRA2A-209ENST00000494255 U2AF1L5P0DN76 240 aaPredicted RBP16.67■□□□□ 0.26
TRA2A-209ENST00000494255 U2AF1Q01081 240 aaKnown RBP eCLIP16.67■□□□□ 0.261e-7■■■□□ 15.2
TRA2A-209ENST00000494255 AMOTQ4VCS5 1084 aa16.67■□□□□ 0.26
TRA2A-209ENST00000494255 SBF2Q86WG5 1849 aa16.67■□□□□ 0.26
TRA2A-209ENST00000494255 KAT6BQ8WYB5 2073 aa16.65■□□□□ 0.26
TRA2A-209ENST00000494255 CYP27B1O15528 508 aa16.65■□□□□ 0.26
TRA2A-209ENST00000494255 ZNF530Q6P9A1 599 aaPredicted RBP16.65■□□□□ 0.26
TRA2A-209ENST00000494255 IFNL2Q8IZJ0 200 aa16.64■□□□□ 0.25
TRA2A-209ENST00000494255 ACSBG1Q96GR2 724 aa16.64■□□□□ 0.25
TRA2A-209ENST00000494255 TNS1Q9HBL0 1735 aaKnown RBP16.64■□□□□ 0.25
TRA2A-209ENST00000494255 BAG6P46379 1132 aa16.63■□□□□ 0.25
TRA2A-209ENST00000494255 C1orf141Q5JVX7 400 aa16.63■□□□□ 0.25
TRA2A-209ENST00000494255 BCL11BQ9C0K0 894 aaPredicted RBP16.63■□□□□ 0.25
TRA2A-209ENST00000494255 FCHSD2O94868 740 aa16.62■□□□□ 0.25
TRA2A-209ENST00000494255 PHKG2P15735 406 aa16.62■□□□□ 0.25
TRA2A-209ENST00000494255 NHSQ6T4R5 1651 aa16.62■□□□□ 0.25
TRA2A-209ENST00000494255 DOT1LQ8TEK3 1739 aa16.62■□□□□ 0.25
TRA2A-209ENST00000494255 APBA3O96018 575 aa16.62■□□□□ 0.25
TRA2A-209ENST00000494255 PRKAR2BP31323 418 aa16.62■□□□□ 0.25
TRA2A-209ENST00000494255 RSPH6AQ9H0K4 717 aa16.62■□□□□ 0.25
TRA2A-209ENST00000494255 NEFMP07197 916 aa16.61■□□□□ 0.25
TRA2A-209ENST00000494255 HSP90AB1P08238 724 aaKnown RBP16.61■□□□□ 0.25
TRA2A-209ENST00000494255 SYTL4Q96C24 671 aaPredicted RBP16.61■□□□□ 0.25
TRA2A-209ENST00000494255 WDR43Q15061 677 aaKnown RBP eCLIP16.6■□□□□ 0.25
TRA2A-209ENST00000494255 NKX1-1Q15270 411 aaPredicted RBP16.6■□□□□ 0.25
TRA2A-209ENST00000494255 PNNQ9H307 717 aaKnown RBP16.6■□□□□ 0.25
TRA2A-209ENST00000494255 EP400Q96L91 3159 aa16.6■□□□□ 0.25
TRA2A-209ENST00000494255 KCNQ2O43526 872 aa16.59■□□□□ 0.25
TRA2A-209ENST00000494255 PRIM1P49642 420 aaKnown RBP16.59■□□□□ 0.25
TRA2A-209ENST00000494255 DEFB132Q7Z7B7 95 aa16.59■□□□□ 0.25
TRA2A-209ENST00000494255 GAS2L2Q8NHY3 880 aa16.59■□□□□ 0.25
TRA2A-209ENST00000494255 MTHFSDQ2M296 383 aaKnown RBP16.58■□□□□ 0.24
TRA2A-209ENST00000494255 AKAP4Q5JQC9 854 aa16.58■□□□□ 0.24
TRA2A-209ENST00000494255 PTF1AQ7RTS3 328 aa16.58■□□□□ 0.24
TRA2A-209ENST00000494255 DCAF5Q96JK2 942 aa16.58■□□□□ 0.24
TRA2A-209ENST00000494255 BTAF1O14981 1849 aa16.57■□□□□ 0.24
TRA2A-209ENST00000494255 EN1Q05925 392 aaPredicted RBP16.56■□□□□ 0.24
TRA2A-209ENST00000494255 TOGARAM1Q9Y4F4 1720 aa16.56■□□□□ 0.24
TRA2A-209ENST00000494255 PHACTR3Q96KR7 559 aa16.56■□□□□ 0.24
TRA2A-209ENST00000494255 MAPK8IP3Q9UPT6 1336 aa16.55■□□□□ 0.24
TRA2A-209ENST00000494255 ITGB4P16144 1822 aa16.55■□□□□ 0.24
TRA2A-209ENST00000494255 PLSCR1O15162 318 aa16.54■□□□□ 0.24
TRA2A-209ENST00000494255 MPRIPQ6WCQ1 1025 aa16.54■□□□□ 0.24
TRA2A-209ENST00000494255 MRS2Q9HD23 443 aa16.54■□□□□ 0.24
TRA2A-209ENST00000494255 TMOD3Q9NYL9 352 aa16.54■□□□□ 0.24
TRA2A-209ENST00000494255 RGPD3A6NKT7 1758 aaPredicted RBP16.54■□□□□ 0.24
TRA2A-209ENST00000494255 RGPD4Q7Z3J3 1758 aa16.54■□□□□ 0.24
TRA2A-209ENST00000494255 MAP3K5Q99683 1374 aa16.54■□□□□ 0.24
TRA2A-209ENST00000494255 ERVV-2B6SEH9 535 aa16.53■□□□□ 0.24
TRA2A-209ENST00000494255 CAMKK2Q96RR4 588 aa16.53■□□□□ 0.24
TRA2A-209ENST00000494255 KDM6AO15550 1401 aaPredicted RBP16.53■□□□□ 0.24
TRA2A-209ENST00000494255 GNAT3A8MTJ3 354 aa16.53■□□□□ 0.24
TRA2A-209ENST00000494255 EZH2Q15910 746 aaKnown RBP16.53■□□□□ 0.24
TRA2A-209ENST00000494255 PLEKHF1Q96S99 279 aa16.53■□□□□ 0.24
TRA2A-209ENST00000494255 SCN11AQ9UI33 1791 aa16.52■□□□□ 0.24
TRA2A-209ENST00000494255 CABP4P57796 275 aa16.52■□□□□ 0.23
TRA2A-209ENST00000494255 CCDC184Q52MB2 194 aa16.52■□□□□ 0.23
TRA2A-209ENST00000494255 DIEXFQ68CQ4 756 aaKnown RBP16.52■□□□□ 0.23
TRA2A-209ENST00000494255 ADAMTS8Q9UP79 889 aa16.52■□□□□ 0.23
TRA2A-209ENST00000494255 RNMTO43148 476 aaKnown RBP16.51■□□□□ 0.23
TRA2A-209ENST00000494255 VIRMAQ69YN4 1812 aaKnown RBP16.51■□□□□ 0.23
TRA2A-209ENST00000494255 PIGBQ92521 554 aa16.5■□□□□ 0.23
TRA2A-209ENST00000494255 RTF1Q92541 710 aaKnown RBP16.5■□□□□ 0.23
TRA2A-209ENST00000494255 SMARCC1Q92922 1105 aaPredicted RBP16.5■□□□□ 0.23
TRA2A-209ENST00000494255 RUNDC1Q96C34 613 aa16.5■□□□□ 0.23
TRA2A-209ENST00000494255 LGR6Q9HBX8 967 aa16.5■□□□□ 0.23
TRA2A-209ENST00000494255 NFE2L2Q16236 605 aa16.49■□□□□ 0.23
TRA2A-209ENST00000494255 CCDC146Q8IYE0 955 aa16.49■□□□□ 0.23
TRA2A-209ENST00000494255 RREB1Q92766 1687 aa16.48■□□□□ 0.23
TRA2A-209ENST00000494255 TXNRD1Q16881 649 aa16.48■□□□□ 0.23
TRA2A-209ENST00000494255 ADAMTS7Q9UKP4 1686 aa16.48■□□□□ 0.23
TRA2A-209ENST00000494255 NFATC2IPQ8NCF5 419 aa16.47■□□□□ 0.23
TRA2A-209ENST00000494255 SLC52A2Q9HAB3 445 aa16.47■□□□□ 0.23
TRA2A-209ENST00000494255 DLG5Q8TDM6 1919 aa16.47■□□□□ 0.23
TRA2A-209ENST00000494255 HTATSF1O43719 755 aaKnown RBP16.46■□□□□ 0.23
TRA2A-209ENST00000494255 TEFQ10587 303 aa16.46■□□□□ 0.23
TRA2A-209ENST00000494255 MRC1P22897 1456 aa16.46■□□□□ 0.23
TRA2A-209ENST00000494255 PALLDQ8WX93 1383 aa16.46■□□□□ 0.23
TRA2A-209ENST00000494255 SLC27A3Q5K4L6 730 aa16.46■□□□□ 0.23
TRA2A-209ENST00000494255 IL17REQ8NFR9 667 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms