RNA–Protein interactions for RNA: ENST00000493348.1

TM4SF1-204, Transcript of transmembrane 4 L six family member 1, humanhuman

TSL 2

Gene TM4SF1, Length 976 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-204ENST00000493348 FAM196AQ6ZSG2 479 aa10.9□□□□□ -0.66
TM4SF1-204ENST00000493348 LRRC37A3O60309 1634 aa10.89□□□□□ -0.67
TM4SF1-204ENST00000493348 NEFMP07197 916 aa10.89□□□□□ -0.67
TM4SF1-204ENST00000493348 PPP2R1AP30153 589 aa10.89□□□□□ -0.67
TM4SF1-204ENST00000493348 ZCRB1Q8TBF4 217 aaKnown RBP10.89□□□□□ -0.67
TM4SF1-204ENST00000493348 EYA1Q99502 592 aa10.89□□□□□ -0.67
TM4SF1-204ENST00000493348 SPG7Q9UQ90 795 aa10.89□□□□□ -0.67
TM4SF1-204ENST00000493348 OVOS2A0A0G2JMS6 1433 aa10.88□□□□□ -0.67
TM4SF1-204ENST00000493348 TNS2Q63HR2 1409 aa10.88□□□□□ -0.67
TM4SF1-204ENST00000493348 CCDC125Q86Z20 511 aa10.88□□□□□ -0.67
TM4SF1-204ENST00000493348 DDX54Q8TDD1 881 aaKnown RBP10.88□□□□□ -0.67
TM4SF1-204ENST00000493348 PARD3Q8TEW0 1356 aa10.88□□□□□ -0.67
TM4SF1-204ENST00000493348 MYBBP1AQ9BQG0 1328 aaKnown RBP10.87□□□□□ -0.67
TM4SF1-204ENST00000493348 PCDH11XQ9BZA7 1347 aa10.86□□□□□ -0.67
TM4SF1-204ENST00000493348 PCDH11YQ9BZA8 1340 aa10.86□□□□□ -0.67
TM4SF1-204ENST00000493348 DISP2A7MBM2 1401 aa10.86□□□□□ -0.67
TM4SF1-204ENST00000493348 PLEKHO1Q53GL0 409 aaPredicted RBP10.86□□□□□ -0.67
TM4SF1-204ENST00000493348 FAM182BQ5T319 152 aa10.86□□□□□ -0.67
TM4SF1-204ENST00000493348 SULT6B1Q6IMI4 303 aa10.86□□□□□ -0.67
TM4SF1-204ENST00000493348 RGPD1P0DJD0 1748 aa10.86□□□□□ -0.67
TM4SF1-204ENST00000493348 IGSF1Q8N6C5 1336 aa10.85□□□□□ -0.67
TM4SF1-204ENST00000493348 U2AF1L5P0DN76 240 aaPredicted RBP10.85□□□□□ -0.67
TM4SF1-204ENST00000493348 IL13P35225 146 aa10.85□□□□□ -0.67
TM4SF1-204ENST00000493348 U2AF1Q01081 240 aaKnown RBP eCLIP10.85□□□□□ -0.672e-13■□□□□ 10.4
TM4SF1-204ENST00000493348 AMOTQ4VCS5 1084 aa10.85□□□□□ -0.67
TM4SF1-204ENST00000493348 PNNQ9H307 717 aaKnown RBP10.85□□□□□ -0.67
TM4SF1-204ENST00000493348 MEGF6O75095 1541 aa10.84□□□□□ -0.67
TM4SF1-204ENST00000493348 HMOX1P09601 288 aa10.84□□□□□ -0.67
TM4SF1-204ENST00000493348 BAG6P46379 1132 aa10.84□□□□□ -0.67
TM4SF1-204ENST00000493348 WDR43Q15061 677 aaKnown RBP eCLIP10.84□□□□□ -0.67
TM4SF1-204ENST00000493348 C1orf141Q5JVX7 400 aa10.84□□□□□ -0.67
TM4SF1-204ENST00000493348 UPF1Q92900 1129 aaKnown RBP eCLIP10.84□□□□□ -0.67
TM4SF1-204ENST00000493348 PRKRIP1Q9H875 184 aaPredicted RBP10.84□□□□□ -0.67
TM4SF1-204ENST00000493348 PLEKHG2Q9H7P9 1386 aa10.83□□□□□ -0.68
TM4SF1-204ENST00000493348 TRIM37O94972 964 aa10.83□□□□□ -0.68
TM4SF1-204ENST00000493348 HSP90AB1P08238 724 aaKnown RBP10.83□□□□□ -0.68
TM4SF1-204ENST00000493348 IFNL2Q8IZJ0 200 aa10.83□□□□□ -0.68
TM4SF1-204ENST00000493348 MARCH10Q8NA82 808 aaPredicted RBP10.83□□□□□ -0.68
TM4SF1-204ENST00000493348 SYTL4Q96C24 671 aaPredicted RBP10.83□□□□□ -0.68
TM4SF1-204ENST00000493348 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.83□□□□□ -0.68
TM4SF1-204ENST00000493348 SBF2Q86WG5 1849 aa10.83□□□□□ -0.68
TM4SF1-204ENST00000493348 EP400Q96L91 3159 aa10.82□□□□□ -0.68
TM4SF1-204ENST00000493348 PKD1L3Q7Z443 1732 aa10.82□□□□□ -0.68
TM4SF1-204ENST00000493348 NPM3O75607 178 aaKnown RBP10.82□□□□□ -0.68
TM4SF1-204ENST00000493348 ZNF530Q6P9A1 599 aaPredicted RBP10.82□□□□□ -0.68
TM4SF1-204ENST00000493348 ACSBG1Q96GR2 724 aa10.82□□□□□ -0.68
TM4SF1-204ENST00000493348 APBA3O96018 575 aa10.81□□□□□ -0.68
TM4SF1-204ENST00000493348 AEBP1Q8IUX7 1158 aa10.81□□□□□ -0.68
TM4SF1-204ENST00000493348 NCAPD2Q15021 1401 aa10.81□□□□□ -0.68
TM4SF1-204ENST00000493348 MAPK8IP3Q9UPT6 1336 aa10.81□□□□□ -0.68
TM4SF1-204ENST00000493348 COL3A1P02461 1466 aaPredicted RBP10.81□□□□□ -0.68
TM4SF1-204ENST00000493348 BCL11BQ9C0K0 894 aaPredicted RBP10.8□□□□□ -0.68
TM4SF1-204ENST00000493348 SHANK3Q9BYB0 1731 aa10.8□□□□□ -0.68
TM4SF1-204ENST00000493348 KDRP35968 1356 aa10.79□□□□□ -0.68
TM4SF1-204ENST00000493348 DOT1LQ8TEK3 1739 aa10.79□□□□□ -0.68
TM4SF1-204ENST00000493348 FCHSD2O94868 740 aa10.79□□□□□ -0.68
TM4SF1-204ENST00000493348 GAS2L2Q8NHY3 880 aa10.79□□□□□ -0.68
TM4SF1-204ENST00000493348 BCL9O00512 1426 aa10.78□□□□□ -0.68
TM4SF1-204ENST00000493348 PHKG2P15735 406 aa10.78□□□□□ -0.68
TM4SF1-204ENST00000493348 PRKAR2BP31323 418 aa10.78□□□□□ -0.68
TM4SF1-204ENST00000493348 NHSQ6T4R5 1651 aa10.78□□□□□ -0.68
TM4SF1-204ENST00000493348 TNS1Q9HBL0 1735 aaKnown RBP10.78□□□□□ -0.68
TM4SF1-204ENST00000493348 VIRMAQ69YN4 1812 aaKnown RBP10.77□□□□□ -0.68
TM4SF1-204ENST00000493348 CYP27B1O15528 508 aa10.77□□□□□ -0.69
TM4SF1-204ENST00000493348 HMGB2P26583 209 aaKnown RBP10.77□□□□□ -0.69
TM4SF1-204ENST00000493348 AKAP4Q5JQC9 854 aa10.77□□□□□ -0.69
TM4SF1-204ENST00000493348 MPRIPQ6WCQ1 1025 aa10.77□□□□□ -0.69
TM4SF1-204ENST00000493348 RTF1Q92541 710 aaKnown RBP10.77□□□□□ -0.69
TM4SF1-204ENST00000493348 DCAF5Q96JK2 942 aa10.77□□□□□ -0.69
TM4SF1-204ENST00000493348 TMOD3Q9NYL9 352 aa10.77□□□□□ -0.69
TM4SF1-204ENST00000493348 BTAF1O14981 1849 aa10.77□□□□□ -0.69
TM4SF1-204ENST00000493348 ITGB4P16144 1822 aa10.77□□□□□ -0.69
TM4SF1-204ENST00000493348 PRIM1P49642 420 aaKnown RBP10.76□□□□□ -0.69
TM4SF1-204ENST00000493348 CABP4P57796 275 aa10.76□□□□□ -0.69
TM4SF1-204ENST00000493348 RSPH6AQ9H0K4 717 aa10.76□□□□□ -0.69
TM4SF1-204ENST00000493348 MRS2Q9HD23 443 aa10.76□□□□□ -0.69
TM4SF1-204ENST00000493348 KCNQ2O43526 872 aa10.75□□□□□ -0.69
TM4SF1-204ENST00000493348 EN1Q05925 392 aaPredicted RBP10.75□□□□□ -0.69
TM4SF1-204ENST00000493348 NBPF14Q5TI25 921 aa10.75□□□□□ -0.69
TM4SF1-204ENST00000493348 DIEXFQ68CQ4 756 aaKnown RBP10.75□□□□□ -0.69
TM4SF1-204ENST00000493348 DEFB132Q7Z7B7 95 aa10.75□□□□□ -0.69
TM4SF1-204ENST00000493348 GNAT3A8MTJ3 354 aa10.74□□□□□ -0.69
TM4SF1-204ENST00000493348 ERVV-2B6SEH9 535 aa10.74□□□□□ -0.69
TM4SF1-204ENST00000493348 NKX1-1Q15270 411 aaPredicted RBP10.74□□□□□ -0.69
TM4SF1-204ENST00000493348 MTHFSDQ2M296 383 aaKnown RBP10.74□□□□□ -0.69
TM4SF1-204ENST00000493348 SMARCC1Q92922 1105 aaPredicted RBP10.74□□□□□ -0.69
TM4SF1-204ENST00000493348 SCN11AQ9UI33 1791 aa10.74□□□□□ -0.69
TM4SF1-204ENST00000493348 RGPD3A6NKT7 1758 aaPredicted RBP10.73□□□□□ -0.69
TM4SF1-204ENST00000493348 RGPD4Q7Z3J3 1758 aa10.73□□□□□ -0.69
TM4SF1-204ENST00000493348 PLSCR1O15162 318 aa10.73□□□□□ -0.69
TM4SF1-204ENST00000493348 TEFQ10587 303 aa10.73□□□□□ -0.69
TM4SF1-204ENST00000493348 EZH2Q15910 746 aaKnown RBP10.73□□□□□ -0.69
TM4SF1-204ENST00000493348 MAP3K5Q99683 1374 aa10.73□□□□□ -0.69
TM4SF1-204ENST00000493348 LMOD3Q0VAK6 560 aa10.72□□□□□ -0.69
TM4SF1-204ENST00000493348 RNMTO43148 476 aaKnown RBP10.71□□□□□ -0.69
TM4SF1-204ENST00000493348 CCDC146Q8IYE0 955 aa10.71□□□□□ -0.69
TM4SF1-204ENST00000493348 TTC5Q8N0Z6 440 aa10.71□□□□□ -0.69
TM4SF1-204ENST00000493348 DLG5Q8TDM6 1919 aa10.71□□□□□ -0.69
TM4SF1-204ENST00000493348 RUNDC1Q96C34 613 aa10.71□□□□□ -0.69
TM4SF1-204ENST00000493348 PHACTR3Q96KR7 559 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 1249.9 ms