RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 COPS2P61201 443 aa7.21□□□□□ -1.26
VPS13A-212ENST00000493341 USP4Q13107 963 aa7.21□□□□□ -1.26
VPS13A-212ENST00000493341 RNF20Q5VTR2 975 aa7.21□□□□□ -1.26
VPS13A-212ENST00000493341 PTCRAQ6ISU1 281 aaPredicted RBP7.21□□□□□ -1.26
VPS13A-212ENST00000493341 ZNF687Q8N1G0 1237 aa7.21□□□□□ -1.26
VPS13A-212ENST00000493341 TSEN2Q8NCE0 465 aaKnown RBP7.21□□□□□ -1.26
VPS13A-212ENST00000493341 BCL11AQ9H165 835 aa7.21□□□□□ -1.26
VPS13A-212ENST00000493341 ARHGAP4P98171 946 aa7.2□□□□□ -1.26
VPS13A-212ENST00000493341 NAA30Q147X3 362 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-212ENST00000493341 ECM1Q16610 540 aa7.2□□□□□ -1.26
VPS13A-212ENST00000493341 GAS2L2Q8NHY3 880 aa7.2□□□□□ -1.26
VPS13A-212ENST00000493341 DRC1Q96MC2 740 aa7.2□□□□□ -1.26
VPS13A-212ENST00000493341 STAC3Q96MF2 364 aa7.2□□□□□ -1.26
VPS13A-212ENST00000493341 PPP1R1BQ9UD71 204 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-212ENST00000493341 RECKO95980 971 aa7.2□□□□□ -1.26
VPS13A-212ENST00000493341 SF3B2Q13435 895 aaKnown RBP7.2□□□□□ -1.26
VPS13A-212ENST00000493341 FKBP5Q13451 457 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-212ENST00000493341 EAPPQ56P03 285 aaPredicted RBP7.2□□□□□ -1.26
VPS13A-212ENST00000493341 PCDHB11Q9Y5F2 797 aa7.2□□□□□ -1.26
VPS13A-212ENST00000493341 EMP3P54852 163 aa7.19□□□□□ -1.26
VPS13A-212ENST00000493341 ADGRD1Q6QNK2 874 aa7.19□□□□□ -1.26
VPS13A-212ENST00000493341 FAM177A1Q8N128 213 aaPredicted RBP7.19□□□□□ -1.26
VPS13A-212ENST00000493341 FAM163AQ96GL9 167 aaPredicted RBP7.19□□□□□ -1.26
VPS13A-212ENST00000493341 PURBQ96QR8 312 aaKnown RBP7.19□□□□□ -1.26
VPS13A-212ENST00000493341 WEE1P30291 646 aa7.18□□□□□ -1.26
VPS13A-212ENST00000493341 ZC3H6P61129 1189 aaKnown RBP7.18□□□□□ -1.26
VPS13A-212ENST00000493341 ERFEQ4G0M1 354 aa7.18□□□□□ -1.26
VPS13A-212ENST00000493341 SH3RF1Q7Z6J0 888 aa7.18□□□□□ -1.26
VPS13A-212ENST00000493341 SREK1Q8WXA9 508 aaKnown RBP7.18□□□□□ -1.26
VPS13A-212ENST00000493341 SLC10A4Q96EP9 437 aa7.18□□□□□ -1.26
VPS13A-212ENST00000493341 PUS7Q96PZ0 661 aaKnown RBP7.18□□□□□ -1.26
VPS13A-212ENST00000493341 FAM205CA6NFA0 338 aa7.18□□□□□ -1.26
VPS13A-212ENST00000493341 PTCD1O75127 700 aaKnown RBP7.18□□□□□ -1.26
VPS13A-212ENST00000493341 BPHLQ86WA6 291 aaPredicted RBP7.18□□□□□ -1.26
VPS13A-212ENST00000493341 MARVELD3Q96A59 401 aa7.18□□□□□ -1.26
VPS13A-212ENST00000493341 C8orf37Q96NL8 207 aa7.18□□□□□ -1.26
VPS13A-212ENST00000493341 RAB15P59190 212 aa7.17□□□□□ -1.26
VPS13A-212ENST00000493341 NBPF20Q3BBV1 942 aa7.17□□□□□ -1.26
VPS13A-212ENST00000493341 BAP1Q92560 729 aa7.17□□□□□ -1.26
VPS13A-212ENST00000493341 LINC01559Q495D7 138 aa7.17□□□□□ -1.26
VPS13A-212ENST00000493341 RGL4Q8IZJ4 473 aa7.17□□□□□ -1.26
VPS13A-212ENST00000493341 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS13A-212ENST00000493341 FOXJ1Q92949 421 aa7.17□□□□□ -1.26
VPS13A-212ENST00000493341 BACH2Q9BYV9 841 aa7.17□□□□□ -1.26
VPS13A-212ENST00000493341 WNT2BQ93097 391 aa7.16□□□□□ -1.26
VPS13A-212ENST00000493341 WBP1LQ9NX94 342 aa7.16□□□□□ -1.26
VPS13A-212ENST00000493341 TLL1O43897 1013 aa7.15□□□□□ -1.26
VPS13A-212ENST00000493341 NAALADL2Q58DX5 795 aa7.15□□□□□ -1.26
VPS13A-212ENST00000493341 COL19A1Q14993 1142 aa7.15□□□□□ -1.27
VPS13A-212ENST00000493341 C4orf48Q5BLP8 95 aa7.15□□□□□ -1.27
VPS13A-212ENST00000493341 HELQQ8TDG4 1101 aa7.15□□□□□ -1.27
VPS13A-212ENST00000493341 TMC1Q8TDI8 760 aa7.15□□□□□ -1.27
VPS13A-212ENST00000493341 HRO43593 1189 aa7.14□□□□□ -1.27
VPS13A-212ENST00000493341 MYCP01106 439 aaPredicted RBP7.14□□□□□ -1.27
VPS13A-212ENST00000493341 CDK11BP21127 795 aaKnown RBP7.14□□□□□ -1.27
VPS13A-212ENST00000493341 ERCC5P28715 1186 aaPredicted RBP7.14□□□□□ -1.27
VPS13A-212ENST00000493341 CDK11AQ9UQ88 783 aaPredicted RBP7.14□□□□□ -1.27
VPS13A-212ENST00000493341 FAM13AO94988 1023 aa7.13□□□□□ -1.27
VPS13A-212ENST00000493341 P4HBP07237 508 aaKnown RBP7.13□□□□□ -1.27
VPS13A-212ENST00000493341 LSM11P83369 360 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS13A-212ENST00000493341 C9orf131Q5VYM1 1079 aa7.13□□□□□ -1.27
VPS13A-212ENST00000493341 TMC7Q7Z402 723 aa7.13□□□□□ -1.27
VPS13A-212ENST00000493341 ZNF511Q8NB15 262 aa7.13□□□□□ -1.27
VPS13A-212ENST00000493341 M0R2N6 131 aa7.13□□□□□ -1.27
VPS13A-212ENST00000493341 ADH1BP00325 375 aa7.12□□□□□ -1.27
VPS13A-212ENST00000493341 AAMPQ13685 434 aa7.12□□□□□ -1.27
VPS13A-212ENST00000493341 SEPT12Q8IYM1 358 aa7.12□□□□□ -1.27
VPS13A-212ENST00000493341 CHMP7Q8WUX9 453 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-212ENST00000493341 SCG3Q8WXD2 468 aaKnown RBP7.12□□□□□ -1.27
VPS13A-212ENST00000493341 ESF1Q9H501 851 aaKnown RBP7.12□□□□□ -1.27
VPS13A-212ENST00000493341 ZNF358Q9NW07 568 aa7.12□□□□□ -1.27
VPS13A-212ENST00000493341 ESPNB1AK53 854 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 NDUFB5O43674 189 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 ST18O60284 1047 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 ZPR1O75312 459 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 MPSTP25325 297 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 CCDC125Q86Z20 511 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 SCTRP47872 440 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 COL26A1Q96A83 441 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 VTI1AQ96AJ9 217 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 FAM161BQ96MY7 647 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 BRPF3Q9ULD4 1205 aa7.11□□□□□ -1.27
VPS13A-212ENST00000493341 SCAMP3O14828 347 aaKnown RBP7.1□□□□□ -1.27
VPS13A-212ENST00000493341 IGFBP4P22692 258 aa7.1□□□□□ -1.27
VPS13A-212ENST00000493341 XPCQ01831 940 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-212ENST00000493341 SF3A1Q15459 793 aaKnown RBP7.1□□□□□ -1.27
VPS13A-212ENST00000493341 ANKRD13DQ6ZTN6 518 aa7.1□□□□□ -1.27
VPS13A-212ENST00000493341 TNS4Q8IZW8 715 aa7.1□□□□□ -1.27
VPS13A-212ENST00000493341 UBXN4Q92575 508 aa7.1□□□□□ -1.27
VPS13A-212ENST00000493341 RBCK1Q9BYM8 510 aa7.1□□□□□ -1.27
VPS13A-212ENST00000493341 SLC6A16Q9GZN6 736 aa7.1□□□□□ -1.27
VPS13A-212ENST00000493341 FOXO3O43524 673 aa7.1□□□□□ -1.27
VPS13A-212ENST00000493341 SMARCA5O60264 1052 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-212ENST00000493341 MAPK8P45983 427 aa7.1□□□□□ -1.27
VPS13A-212ENST00000493341 KCTD15Q96SI1 283 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-212ENST00000493341 TMEM229AB2RXF0 380 aa7.09□□□□□ -1.27
VPS13A-212ENST00000493341 STAU1O95793 577 aaKnown RBP7.09□□□□□ -1.27
VPS13A-212ENST00000493341 HDLBPQ00341 1268 aaKnown RBP7.09□□□□□ -1.27
VPS13A-212ENST00000493341 MRPL58Q14197 206 aaKnown RBP7.09□□□□□ -1.27
VPS13A-212ENST00000493341 TMEM87AQ8NBN3 555 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms