RNA–Protein interactions for RNA: ENST00000492896.1

SMARCC1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, human

TSL 4

Gene SMARCC1, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCC1-208	ENST00000492896	SSH1	Q8WYL5	1049 aa		11.75	□□□□□ -0.53
SMARCC1-208	ENST00000492896	TSHZ2	Q9NRE2	1034 aa		11.75	□□□□□ -0.53
SMARCC1-208	ENST00000492896	SPATA31A3	Q5VYP0	1347 aa		11.75	□□□□□ -0.53
SMARCC1-208	ENST00000492896	MCM10	Q7L590	875 aa		11.74	□□□□□ -0.53
SMARCC1-208	ENST00000492896	USHBP1	Q8N6Y0	703 aa		11.74	□□□□□ -0.53
SMARCC1-208	ENST00000492896	PANK1	Q8TE04	598 aa		11.74	□□□□□ -0.53
SMARCC1-208	ENST00000492896	CACNA1F	O60840	1977 aa		11.74	□□□□□ -0.53
SMARCC1-208	ENST00000492896	AAMP	Q13685	434 aa		11.73	□□□□□ -0.53
SMARCC1-208	ENST00000492896	KDM3B	Q7LBC6	1761 aa		11.73	□□□□□ -0.53
SMARCC1-208	ENST00000492896	FTSJ3	Q8IY81	847 aa	Known RBP	11.73	□□□□□ -0.53
SMARCC1-208	ENST00000492896	ANKRD24	Q8TF21	1146 aa		11.73	□□□□□ -0.53
SMARCC1-208	ENST00000492896	COG6	Q9Y2V7	657 aa		11.73	□□□□□ -0.53
SMARCC1-208	ENST00000492896	KIAA0232	Q92628	1395 aa		11.72	□□□□□ -0.53
SMARCC1-208	ENST00000492896	GNAT3	A8MTJ3	354 aa		11.72	□□□□□ -0.53
SMARCC1-208	ENST00000492896	HAP1	P54257	671 aa	Predicted RBP	11.72	□□□□□ -0.53
SMARCC1-208	ENST00000492896	TWISTNB	Q3B726	338 aa	Predicted RBP	11.72	□□□□□ -0.53
SMARCC1-208	ENST00000492896	NBPF6	Q5VWK0	638 aa		11.72	□□□□□ -0.53
SMARCC1-208	ENST00000492896	NBPF4	Q96M43	638 aa		11.72	□□□□□ -0.53
SMARCC1-208	ENST00000492896	SLAIN2	Q9P270	581 aa		11.72	□□□□□ -0.53
SMARCC1-208	ENST00000492896	CPD	O75976	1380 aa		11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	ERBB3	P21860	1342 aa		11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	SOS2	Q07890	1332 aa	Predicted RBP	11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	KDM2B	Q8NHM5	1336 aa		11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	CHL1	O00533	1208 aa		11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	IPO8	O15397	1037 aa	Known RBP	11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	VAMP4	O75379	141 aa		11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	BRPF1	P55201	1214 aa	Predicted RBP	11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	ZC3H6	P61129	1189 aa	Known RBP	11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	ATF7IP	Q6VMQ6	1270 aa		11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	CENPQ	Q7L2Z9	268 aa	Predicted RBP	11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	DZIP1L	Q8IYY4	767 aa	Known RBP	11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	LRRC59	Q96AG4	307 aa	Known RBP	11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	TNN	Q9UQP3	1299 aa		11.71	□□□□□ -0.53
SMARCC1-208	ENST00000492896	SIPA1L3	O60292	1781 aa	Predicted RBP	11.71	□□□□□ -0.54
SMARCC1-208	ENST00000492896	PKD1L3	Q7Z443	1732 aa		11.71	□□□□□ -0.54
SMARCC1-208	ENST00000492896	ADAMTS7	Q9UKP4	1686 aa		11.71	□□□□□ -0.54
SMARCC1-208	ENST00000492896	ROBO1	Q9Y6N7	1651 aa		11.71	□□□□□ -0.54
SMARCC1-208	ENST00000492896	PARP4	Q9UKK3	1724 aa	Known RBP	11.7	□□□□□ -0.54
SMARCC1-208	ENST00000492896	RLBP1	P12271	317 aa		11.7	□□□□□ -0.54
SMARCC1-208	ENST00000492896	TRIM27	P14373	513 aa		11.7	□□□□□ -0.54
SMARCC1-208	ENST00000492896	MVP	Q14764	893 aa	Known RBP	11.7	□□□□□ -0.54
SMARCC1-208	ENST00000492896	TSPYL6	Q8N831	410 aa		11.7	□□□□□ -0.54
SMARCC1-208	ENST00000492896	CLUAP1	Q96AJ1	413 aa		11.7	□□□□□ -0.54
SMARCC1-208	ENST00000492896	NOB1	Q9ULX3	412 aa	Known RBP	11.7	□□□□□ -0.54
SMARCC1-208	ENST00000492896	OVOS2	A0A0G2JMS6	1433 aa		11.69	□□□□□ -0.54
SMARCC1-208	ENST00000492896	SCN11A	Q9UI33	1791 aa		11.69	□□□□□ -0.54
SMARCC1-208	ENST00000492896	LTBP4	Q8N2S1	1624 aa		11.69	□□□□□ -0.54
SMARCC1-208	ENST00000492896	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.69	□□□□□ -0.54
SMARCC1-208	ENST00000492896	MRPL50	Q8N5N7	158 aa	Known RBP	11.69	□□□□□ -0.54
SMARCC1-208	ENST00000492896	C8orf58	Q8NAV2	365 aa		11.69	□□□□□ -0.54
SMARCC1-208	ENST00000492896	TSPYL4	Q9UJ04	414 aa		11.69	□□□□□ -0.54
SMARCC1-208	ENST00000492896	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.68	□□□□□ -0.54
SMARCC1-208	ENST00000492896	AMOT	Q4VCS5	1084 aa		11.68	□□□□□ -0.54
SMARCC1-208	ENST00000492896	CABLES1	Q8TDN4	633 aa		11.68	□□□□□ -0.54
SMARCC1-208	ENST00000492896	AXIN2	Q9Y2T1	843 aa		11.68	□□□□□ -0.54
SMARCC1-208	ENST00000492896	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.68	□□□□□ -0.54
SMARCC1-208	ENST00000492896	PLEKHG2	Q9H7P9	1386 aa		11.67	□□□□□ -0.54
SMARCC1-208	ENST00000492896	ELL2	O00472	640 aa	Predicted RBP	11.67	□□□□□ -0.54
SMARCC1-208	ENST00000492896	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.67	□□□□□ -0.54
SMARCC1-208	ENST00000492896	ARHGAP45	Q92619	1136 aa		11.67	□□□□□ -0.54
SMARCC1-208	ENST00000492896	BABAM1	Q9NWV8	329 aa		11.67	□□□□□ -0.54
SMARCC1-208	ENST00000492896	DDX19B	Q9UMR2	479 aa		11.67	□□□□□ -0.54
SMARCC1-208	ENST00000492896	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.67	□□□□□ -0.54
SMARCC1-208	ENST00000492896	CEMIP	Q8WUJ3	1361 aa		11.67	□□□□□ -0.54
SMARCC1-208	ENST00000492896	AKAP4	Q5JQC9	854 aa		11.66	□□□□□ -0.54
SMARCC1-208	ENST00000492896	ITPRIP	Q8IWB1	547 aa		11.66	□□□□□ -0.54
SMARCC1-208	ENST00000492896	IL17RE	Q8NFR9	667 aa		11.66	□□□□□ -0.54
SMARCC1-208	ENST00000492896	TCERG1	O14776	1098 aa	Known RBP	11.65	□□□□□ -0.54
SMARCC1-208	ENST00000492896	CSB-PGBD3	P0DP91	1061 aa		11.65	□□□□□ -0.54
SMARCC1-208	ENST00000492896	KRT24	Q2M2I5	525 aa		11.65	□□□□□ -0.54
SMARCC1-208	ENST00000492896	C1orf141	Q5JVX7	400 aa		11.65	□□□□□ -0.54
SMARCC1-208	ENST00000492896	TMEM57	Q8N5G2	664 aa		11.65	□□□□□ -0.54
SMARCC1-208	ENST00000492896	API5	Q9BZZ5	524 aa	Known RBP	11.65	□□□□□ -0.54
SMARCC1-208	ENST00000492896	MEGF6	O75095	1541 aa		11.65	□□□□□ -0.55
SMARCC1-208	ENST00000492896	ABCC4	O15439	1325 aa		11.64	□□□□□ -0.55
SMARCC1-208	ENST00000492896	SOS1	Q07889	1333 aa	Predicted RBP	11.64	□□□□□ -0.55
SMARCC1-208	ENST00000492896	PHLPP1	O60346	1717 aa		11.64	□□□□□ -0.55
SMARCC1-208	ENST00000492896	TAF7	Q15545	349 aa	Predicted RBP	11.64	□□□□□ -0.55
SMARCC1-208	ENST00000492896	CHRNA2	Q15822	529 aa		11.64	□□□□□ -0.55
SMARCC1-208	ENST00000492896	RAPGEF4	Q8WZA2	1011 aa		11.64	□□□□□ -0.55
SMARCC1-208	ENST00000492896	NLRP2	Q9NX02	1062 aa		11.64	□□□□□ -0.55
SMARCC1-208	ENST00000492896	MIS18A	Q9NYP9	233 aa		11.64	□□□□□ -0.55
SMARCC1-208	ENST00000492896	COL14A1	Q05707	1796 aa	Known RBP	11.64	□□□□□ -0.55
SMARCC1-208	ENST00000492896	COL5A2	P05997	1499 aa	Predicted RBP	11.63	□□□□□ -0.55
SMARCC1-208	ENST00000492896	TAT	P17735	454 aa	Predicted RBP	11.63	□□□□□ -0.55
SMARCC1-208	ENST00000492896	CHMP4B	Q9H444	224 aa	Known RBP	11.63	□□□□□ -0.55
SMARCC1-208	ENST00000492896	PRDM11	Q9NQV5	511 aa		11.63	□□□□□ -0.55
SMARCC1-208	ENST00000492896	SHANK3	Q9BYB0	1731 aa		11.62	□□□□□ -0.55
SMARCC1-208	ENST00000492896	PTPRC	P08575	1304 aa		11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	RGS12	O14924	1447 aa		11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	WNK3	Q9BYP7	1800 aa		11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	RNMT	O43148	476 aa	Known RBP	11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	IGHD	P01880	384 aa		11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	TEF	Q10587	303 aa		11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	SPG7	Q9UQ90	795 aa		11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	RBM19	Q9Y4C8	960 aa	Known RBP	11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	PCDHB15	Q9Y5E8	787 aa		11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	MRC1	P22897	1456 aa		11.61	□□□□□ -0.55
SMARCC1-208	ENST00000492896	WDR17	Q8IZU2	1322 aa		11.6	□□□□□ -0.55
SMARCC1-208	ENST00000492896	COL16A1	Q07092	1604 aa	Predicted RBP	11.6	□□□□□ -0.55

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