RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 DLG5Q8TDM6 1919 aa18.39■□□□□ 0.53
C9orf3-221ENST00000489562 MEGF6O75095 1541 aa18.39■□□□□ 0.53
C9orf3-221ENST00000489562 GLI3P10071 1580 aa18.38■□□□□ 0.53
C9orf3-221ENST00000489562 AMOTQ4VCS5 1084 aa18.37■□□□□ 0.53
C9orf3-221ENST00000489562 GJD4Q96KN9 370 aaPredicted RBP18.37■□□□□ 0.53
C9orf3-221ENST00000489562 PHF23Q9BUL5 403 aaPredicted RBP18.37■□□□□ 0.53
C9orf3-221ENST00000489562 QTRT2Q9H974 415 aaKnown RBP18.37■□□□□ 0.53
C9orf3-221ENST00000489562 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.37■□□□□ 0.53
C9orf3-221ENST00000489562 PLEKHO1Q53GL0 409 aaPredicted RBP18.36■□□□□ 0.53
C9orf3-221ENST00000489562 CCDC146Q8IYE0 955 aa18.36■□□□□ 0.53
C9orf3-221ENST00000489562 THSD7AQ9UPZ6 1657 aa18.36■□□□□ 0.53
C9orf3-221ENST00000489562 SHANK3Q9BYB0 1731 aa18.35■□□□□ 0.53
C9orf3-221ENST00000489562 LRRC37A3O60309 1634 aa18.34■□□□□ 0.53
C9orf3-221ENST00000489562 NGEFQ8N5V2 710 aa18.34■□□□□ 0.53
C9orf3-221ENST00000489562 GAS2L2Q8NHY3 880 aa18.34■□□□□ 0.53
C9orf3-221ENST00000489562 SPG7Q9UQ90 795 aa18.34■□□□□ 0.53
C9orf3-221ENST00000489562 VIRMAQ69YN4 1812 aaKnown RBP18.34■□□□□ 0.53
C9orf3-221ENST00000489562 PHACTR3Q96KR7 559 aa18.33■□□□□ 0.52
C9orf3-221ENST00000489562 TNS2Q63HR2 1409 aa18.32■□□□□ 0.52
C9orf3-221ENST00000489562 RBM6P78332 1123 aaKnown RBP18.32■□□□□ 0.52
C9orf3-221ENST00000489562 NCBP3Q53F19 620 aaKnown RBP18.32■□□□□ 0.52
C9orf3-221ENST00000489562 NFE2L2Q16236 605 aa18.31■□□□□ 0.52
C9orf3-221ENST00000489562 ZCRB1Q8TBF4 217 aaKnown RBP18.31■□□□□ 0.52
C9orf3-221ENST00000489562 PCDH11XQ9BZA7 1347 aa18.3■□□□□ 0.52
C9orf3-221ENST00000489562 PCDH11YQ9BZA8 1340 aa18.3■□□□□ 0.52
C9orf3-221ENST00000489562 APAF1O14727 1248 aa18.3■□□□□ 0.52
C9orf3-221ENST00000489562 ONECUT3O60422 494 aaPredicted RBP18.3■□□□□ 0.52
C9orf3-221ENST00000489562 FAM98CQ17RN3 349 aaKnown RBP18.3■□□□□ 0.52
C9orf3-221ENST00000489562 EXOC5O00471 708 aa18.29■□□□□ 0.52
C9orf3-221ENST00000489562 TMPOP42166 694 aaKnown RBP18.29■□□□□ 0.52
C9orf3-221ENST00000489562 LMOD3Q0VAK6 560 aa18.29■□□□□ 0.52
C9orf3-221ENST00000489562 DDB1Q16531 1140 aa18.29■□□□□ 0.52
C9orf3-221ENST00000489562 MTHFSDQ2M296 383 aaKnown RBP18.29■□□□□ 0.52
C9orf3-221ENST00000489562 ZNF530Q6P9A1 599 aaPredicted RBP18.29■□□□□ 0.52
C9orf3-221ENST00000489562 RGS17Q9UGC6 210 aaPredicted RBP18.29■□□□□ 0.52
C9orf3-221ENST00000489562 SCN11AQ9UI33 1791 aa18.28■□□□□ 0.52
C9orf3-221ENST00000489562 C1orf141Q5JVX7 400 aa18.28■□□□□ 0.52
C9orf3-221ENST00000489562 MAP3K5Q99683 1374 aa18.28■□□□□ 0.52
C9orf3-221ENST00000489562 HTATSF1O43719 755 aaKnown RBP18.27■□□□□ 0.52
C9orf3-221ENST00000489562 RXRBP28702 533 aa18.27■□□□□ 0.52
C9orf3-221ENST00000489562 AKAP4Q5JQC9 854 aa18.27■□□□□ 0.52
C9orf3-221ENST00000489562 IFNL2Q8IZJ0 200 aa18.27■□□□□ 0.52
C9orf3-221ENST00000489562 ADAMTS7Q9UKP4 1686 aa18.27■□□□□ 0.52
C9orf3-221ENST00000489562 BRWD3Q6RI45 1802 aa18.26■□□□□ 0.51
C9orf3-221ENST00000489562 A0A0G2JS52 829 aa18.26■□□□□ 0.51
C9orf3-221ENST00000489562 HSP90AB1P08238 724 aaKnown RBP18.26■□□□□ 0.51
C9orf3-221ENST00000489562 RIPK4P57078 832 aa18.26■□□□□ 0.51
C9orf3-221ENST00000489562 HNRNPUQ00839 825 aaKnown RBP eCLIP18.26■□□□□ 0.51
C9orf3-221ENST00000489562 MYT1Q01538 1121 aa18.26■□□□□ 0.51
C9orf3-221ENST00000489562 CCDC27Q2M243 656 aa18.26■□□□□ 0.51
C9orf3-221ENST00000489562 GNAT3A8MTJ3 354 aa18.25■□□□□ 0.51
C9orf3-221ENST00000489562 PHKG2P15735 406 aa18.24■□□□□ 0.51
C9orf3-221ENST00000489562 NEUROD2Q15784 382 aa18.24■□□□□ 0.51
C9orf3-221ENST00000489562 RTF1Q92541 710 aaKnown RBP18.24■□□□□ 0.51
C9orf3-221ENST00000489562 RRP7AQ9Y3A4 280 aaKnown RBP18.24■□□□□ 0.51
C9orf3-221ENST00000489562 KAT6BQ8WYB5 2073 aa18.23■□□□□ 0.51
C9orf3-221ENST00000489562 CYP27B1O15528 508 aa18.23■□□□□ 0.51
C9orf3-221ENST00000489562 POTEAQ6S8J7 498 aa18.23■□□□□ 0.51
C9orf3-221ENST00000489562 SEPT12Q8IYM1 358 aa18.23■□□□□ 0.51
C9orf3-221ENST00000489562 PDE3BQ13370 1112 aa18.22■□□□□ 0.51
C9orf3-221ENST00000489562 NKX1-1Q15270 411 aaPredicted RBP18.22■□□□□ 0.51
C9orf3-221ENST00000489562 DDX54Q8TDD1 881 aaKnown RBP18.22■□□□□ 0.51
C9orf3-221ENST00000489562 DCAF5Q96JK2 942 aa18.21■□□□□ 0.51
C9orf3-221ENST00000489562 ZBED9Q6R2W3 1325 aa18.21■□□□□ 0.51
C9orf3-221ENST00000489562 SIPA1L3O60292 1781 aaPredicted RBP18.2■□□□□ 0.5
C9orf3-221ENST00000489562 CALD1Q05682 793 aaKnown RBP18.2■□□□□ 0.5
C9orf3-221ENST00000489562 TRIM35Q9UPQ4 493 aa18.2■□□□□ 0.5
C9orf3-221ENST00000489562 DOT1LQ8TEK3 1739 aa18.2■□□□□ 0.5
C9orf3-221ENST00000489562 CEMIPQ8WUJ3 1361 aa18.19■□□□□ 0.5
C9orf3-221ENST00000489562 ITGB4P16144 1822 aa18.19■□□□□ 0.5
C9orf3-221ENST00000489562 RGS12O14924 1447 aa18.19■□□□□ 0.5
C9orf3-221ENST00000489562 WWC1Q8IX03 1113 aa18.19■□□□□ 0.5
C9orf3-221ENST00000489562 TOGARAM1Q9Y4F4 1720 aa18.19■□□□□ 0.5
C9orf3-221ENST00000489562 BCL9O00512 1426 aa18.18■□□□□ 0.5
C9orf3-221ENST00000489562 KDM6AO15550 1401 aaPredicted RBP18.18■□□□□ 0.5
C9orf3-221ENST00000489562 MARCH10Q8NA82 808 aaPredicted RBP18.18■□□□□ 0.5
C9orf3-221ENST00000489562 MRC1P22897 1456 aa18.18■□□□□ 0.5
C9orf3-221ENST00000489562 SBF2Q86WG5 1849 aa18.18■□□□□ 0.5
C9orf3-221ENST00000489562 ZNF521Q96K83 1311 aa18.18■□□□□ 0.5
C9orf3-221ENST00000489562 RNMTO43148 476 aaKnown RBP18.17■□□□□ 0.5
C9orf3-221ENST00000489562 MPRIPQ6WCQ1 1025 aa18.17■□□□□ 0.5
C9orf3-221ENST00000489562 WDR63Q8IWG1 891 aa18.17■□□□□ 0.5
C9orf3-221ENST00000489562 YTHDC1Q96MU7 727 aaKnown RBP18.17■□□□□ 0.5
C9orf3-221ENST00000489562 SALL2Q9Y467 1007 aaPredicted RBP18.17■□□□□ 0.5
C9orf3-221ENST00000489562 MCM10Q7L590 875 aa18.16■□□□□ 0.5
C9orf3-221ENST00000489562 KRT27Q7Z3Y8 459 aa18.16■□□□□ 0.5
C9orf3-221ENST00000489562 IL17REQ8NFR9 667 aa18.16■□□□□ 0.5
C9orf3-221ENST00000489562 IL16Q14005 1332 aa18.16■□□□□ 0.5
C9orf3-221ENST00000489562 SENP3-EIF4A1A0A087X0R7 540 aa18.15■□□□□ 0.5
C9orf3-221ENST00000489562 ERVV-2B6SEH9 535 aa18.15■□□□□ 0.5
C9orf3-221ENST00000489562 TEFQ10587 303 aa18.14■□□□□ 0.49
C9orf3-221ENST00000489562 DCTN1Q14203 1278 aa18.14■□□□□ 0.49
C9orf3-221ENST00000489562 NHSQ6T4R5 1651 aa18.14■□□□□ 0.49
C9orf3-221ENST00000489562 GOLGA2Q08379 1002 aa18.13■□□□□ 0.49
C9orf3-221ENST00000489562 LGR6Q9HBX8 967 aa18.13■□□□□ 0.49
C9orf3-221ENST00000489562 KDM3BQ7LBC6 1761 aa18.12■□□□□ 0.49
C9orf3-221ENST00000489562 THUMPD2Q9BTF0 503 aaKnown RBP18.12■□□□□ 0.49
C9orf3-221ENST00000489562 SLC52A2Q9HAB3 445 aa18.12■□□□□ 0.49
C9orf3-221ENST00000489562 BABAM1Q9NWV8 329 aa18.12■□□□□ 0.49
C9orf3-221ENST00000489562 CABP4P57796 275 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms