RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 CFAP53Q96M91 514 aa11.11□□□□□ -0.63
VTI1A-207ENST00000489357 RGS17Q9UGC6 210 aaPredicted RBP11.11□□□□□ -0.63
VTI1A-207ENST00000489357 SPATA31A6Q5VVP1 1343 aa11.1□□□□□ -0.63
VTI1A-207ENST00000489357 SSH2Q76I76 1423 aa11.1□□□□□ -0.63
VTI1A-207ENST00000489357 SRPK2P78362 688 aaKnown RBP11.1□□□□□ -0.63
VTI1A-207ENST00000489357 MORC1Q86VD1 984 aa11.1□□□□□ -0.63
VTI1A-207ENST00000489357 MICALL2Q8IY33 904 aa11.1□□□□□ -0.63
VTI1A-207ENST00000489357 ACEP12821 1306 aa11.09□□□□□ -0.63
VTI1A-207ENST00000489357 CPSF1Q10570 1443 aaKnown RBP11.09□□□□□ -0.63
VTI1A-207ENST00000489357 PPIP5K1Q6PFW1 1433 aa11.09□□□□□ -0.63
VTI1A-207ENST00000489357 CD163L1Q9NR16 1453 aa11.09□□□□□ -0.63
VTI1A-207ENST00000489357 PSME1Q06323 249 aa11.09□□□□□ -0.63
VTI1A-207ENST00000489357 TMEM121BQ9BXQ6 578 aaPredicted RBP11.09□□□□□ -0.63
VTI1A-207ENST00000489357 SLC12A5Q9H2X9 1139 aa11.09□□□□□ -0.63
VTI1A-207ENST00000489357 CABP1Q9NZU7 370 aa11.09□□□□□ -0.63
VTI1A-207ENST00000489357 TRMT2AQ8IZ69 625 aaKnown RBP11.08□□□□□ -0.64
VTI1A-207ENST00000489357 CRYBG1Q9Y4K1 1723 aa11.07□□□□□ -0.64
VTI1A-207ENST00000489357 A0A1W2PP64 1363 aa11.07□□□□□ -0.64
VTI1A-207ENST00000489357 XPCQ01831 940 aaPredicted RBP11.07□□□□□ -0.64
VTI1A-207ENST00000489357 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.07□□□□□ -0.64
VTI1A-207ENST00000489357 TNS3Q68CZ2 1445 aa11.07□□□□□ -0.64
VTI1A-207ENST00000489357 KIF20BQ96Q89 1820 aa11.07□□□□□ -0.64
VTI1A-207ENST00000489357 MON2Q7Z3U7 1717 aa11.06□□□□□ -0.64
VTI1A-207ENST00000489357 MARF1Q9Y4F3 1742 aaKnown RBP11.06□□□□□ -0.64
VTI1A-207ENST00000489357 NUTM2BA6NNL0 878 aaPredicted RBP11.06□□□□□ -0.64
VTI1A-207ENST00000489357 NUTM2EB1AL46 878 aaPredicted RBP11.06□□□□□ -0.64
VTI1A-207ENST00000489357 E9PSI1 815 aa11.06□□□□□ -0.64
VTI1A-207ENST00000489357 IRX6P78412 446 aaPredicted RBP11.06□□□□□ -0.64
VTI1A-207ENST00000489357 CCDC27Q2M243 656 aa11.06□□□□□ -0.64
VTI1A-207ENST00000489357 HDGFL2Q7Z4V5 671 aaPredicted RBP11.06□□□□□ -0.64
VTI1A-207ENST00000489357 NUTM2AQ8IVF1 878 aaPredicted RBP11.06□□□□□ -0.64
VTI1A-207ENST00000489357 NGDNQ8NEJ9 315 aaKnown RBP11.06□□□□□ -0.64
VTI1A-207ENST00000489357 CCDC136Q96JN2 1154 aa11.06□□□□□ -0.64
VTI1A-207ENST00000489357 USP6P35125 1406 aa11.06□□□□□ -0.64
VTI1A-207ENST00000489357 SOCS7O14512 581 aa11.05□□□□□ -0.64
VTI1A-207ENST00000489357 SLFN5Q08AF3 891 aa11.05□□□□□ -0.64
VTI1A-207ENST00000489357 MEX3CQ5U5Q3 659 aaKnown RBP11.05□□□□□ -0.64
VTI1A-207ENST00000489357 DUSP27Q5VZP5 1158 aa11.05□□□□□ -0.64
VTI1A-207ENST00000489357 POTEAQ6S8J7 498 aa11.05□□□□□ -0.64
VTI1A-207ENST00000489357 ARHGEF10O15013 1369 aa11.04□□□□□ -0.64
VTI1A-207ENST00000489357 ABCA3Q99758 1704 aa11.04□□□□□ -0.64
VTI1A-207ENST00000489357 NRKQ7Z2Y5 1582 aa11.04□□□□□ -0.64
VTI1A-207ENST00000489357 RUNDC1Q96C34 613 aa11.04□□□□□ -0.64
VTI1A-207ENST00000489357 PNNQ9H307 717 aaKnown RBP11.04□□□□□ -0.64
VTI1A-207ENST00000489357 USP54Q70EL1 1684 aa11.03□□□□□ -0.64
VTI1A-207ENST00000489357 EDC4Q6P2E9 1401 aaKnown RBP11.02□□□□□ -0.64
VTI1A-207ENST00000489357 PDE4AP27815 886 aa11.02□□□□□ -0.65
VTI1A-207ENST00000489357 WDR63Q8IWG1 891 aa11.02□□□□□ -0.65
VTI1A-207ENST00000489357 CDCA7LQ96GN5 454 aa11.02□□□□□ -0.65
VTI1A-207ENST00000489357 COL3A1P02461 1466 aaPredicted RBP11.01□□□□□ -0.65
VTI1A-207ENST00000489357 APAF1O14727 1248 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 MTHFSP49914 203 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 AAMPQ13685 434 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 B4GALNT3Q6L9W6 998 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 RBM19Q9Y4C8 960 aaKnown RBP11.01□□□□□ -0.65
VTI1A-207ENST00000489357 USP19O94966 1318 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 TTC21BQ7Z4L5 1316 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 TTC21AQ8NDW8 1320 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 FANCIQ9NVI1 1328 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 PIK3C2AO00443 1686 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 USP31Q70CQ4 1352 aa11.01□□□□□ -0.65
VTI1A-207ENST00000489357 POTEB2H3BUK9 544 aa11□□□□□ -0.65
VTI1A-207ENST00000489357 ADAMTS2O95450 1211 aa11□□□□□ -0.65
VTI1A-207ENST00000489357 CT47B1P0C2W7 299 aaPredicted RBP11□□□□□ -0.65
VTI1A-207ENST00000489357 C3orf67Q6ZVT6 689 aa11□□□□□ -0.65
VTI1A-207ENST00000489357 FNBP4Q8N3X1 1017 aaPredicted RBP11□□□□□ -0.65
VTI1A-207ENST00000489357 C8orf37Q96NL8 207 aa11□□□□□ -0.65
VTI1A-207ENST00000489357 PHRF1Q9P1Y6 1649 aaKnown RBP10.99□□□□□ -0.65
VTI1A-207ENST00000489357 FYB1O15117 783 aa10.99□□□□□ -0.65
VTI1A-207ENST00000489357 MYT1Q01538 1121 aa10.99□□□□□ -0.65
VTI1A-207ENST00000489357 WWC1Q8IX03 1113 aa10.99□□□□□ -0.65
VTI1A-207ENST00000489357 CRISPLD2Q9H0B8 497 aa10.99□□□□□ -0.65
VTI1A-207ENST00000489357 AFF2P51816 1311 aa10.99□□□□□ -0.65
VTI1A-207ENST00000489357 AATKQ6ZMQ8 1374 aa10.99□□□□□ -0.65
VTI1A-207ENST00000489357 ZNF772Q68DY9 489 aaPredicted RBP10.98□□□□□ -0.65
VTI1A-207ENST00000489357 ABTB2Q8N961 1025 aa10.98□□□□□ -0.65
VTI1A-207ENST00000489357 CABLES1Q8TDN4 633 aa10.98□□□□□ -0.65
VTI1A-207ENST00000489357 WDR70Q9NW82 654 aa10.98□□□□□ -0.65
VTI1A-207ENST00000489357 SALL2Q9Y467 1007 aaPredicted RBP10.98□□□□□ -0.65
VTI1A-207ENST00000489357 SLIT3O75094 1523 aa10.98□□□□□ -0.65
VTI1A-207ENST00000489357 SLIT2O94813 1529 aa10.98□□□□□ -0.65
VTI1A-207ENST00000489357 TMC2Q8TDI7 906 aa10.97□□□□□ -0.65
VTI1A-207ENST00000489357 IL16Q14005 1332 aa10.97□□□□□ -0.65
VTI1A-207ENST00000489357 BCL9LQ86UU0 1499 aa10.97□□□□□ -0.65
VTI1A-207ENST00000489357 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.97□□□□□ -0.65
VTI1A-207ENST00000489357 NWD2Q9ULI1 1742 aa10.97□□□□□ -0.65
VTI1A-207ENST00000489357 COL18A1P39060 1754 aa10.96□□□□□ -0.65
VTI1A-207ENST00000489357 CDK12Q9NYV4 1490 aaPredicted RBP10.96□□□□□ -0.65
VTI1A-207ENST00000489357 CPDO75976 1380 aa10.96□□□□□ -0.65
VTI1A-207ENST00000489357 FAM83GA6ND36 823 aa10.96□□□□□ -0.65
VTI1A-207ENST00000489357 TCERG1O14776 1098 aaKnown RBP10.96□□□□□ -0.65
VTI1A-207ENST00000489357 POTEJP0CG39 1038 aa10.96□□□□□ -0.65
VTI1A-207ENST00000489357 MS4A1P11836 297 aa10.96□□□□□ -0.65
VTI1A-207ENST00000489357 PDE3AQ14432 1141 aa10.96□□□□□ -0.65
VTI1A-207ENST00000489357 TCP11L2Q8N4U5 519 aa10.96□□□□□ -0.65
VTI1A-207ENST00000489357 LARP6Q9BRS8 491 aaKnown RBP10.96□□□□□ -0.65
VTI1A-207ENST00000489357 MYH16Q9H6N6 1097 aa10.96□□□□□ -0.65
VTI1A-207ENST00000489357 GPHNQ9NQX3 736 aaPredicted RBP10.96□□□□□ -0.65
VTI1A-207ENST00000489357 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.96□□□□□ -0.65
VTI1A-207ENST00000489357 GCP02774 474 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms