RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 PLSCR1O15162 318 aa24.39■■□□□ 1.49
ITGB1-215ENST00000488494 DDX54Q8TDD1 881 aaKnown RBP24.39■■□□□ 1.49
ITGB1-215ENST00000488494 BTAF1O14981 1849 aa24.39■■□□□ 1.49
ITGB1-215ENST00000488494 RAPGEF4Q8WZA2 1011 aa24.37■■□□□ 1.49
ITGB1-215ENST00000488494 POLKQ9UBT6 870 aa24.37■■□□□ 1.49
ITGB1-215ENST00000488494 NCAPD2Q15021 1401 aa24.36■■□□□ 1.49
ITGB1-215ENST00000488494 NBPF14Q5TI25 921 aa24.36■■□□□ 1.49
ITGB1-215ENST00000488494 ZCRB1Q8TBF4 217 aaKnown RBP24.36■■□□□ 1.49
ITGB1-215ENST00000488494 WASHC2AQ641Q2 1341 aa24.35■■□□□ 1.49
ITGB1-215ENST00000488494 PKD1L3Q7Z443 1732 aa24.33■■□□□ 1.49
ITGB1-215ENST00000488494 KNSTRNQ9Y448 316 aa24.33■■□□□ 1.49
ITGB1-215ENST00000488494 TATP17735 454 aaPredicted RBP24.32■■□□□ 1.48
ITGB1-215ENST00000488494 ANO8Q9HCE9 1232 aaPredicted RBP24.32■■□□□ 1.48
ITGB1-215ENST00000488494 TXNRD1Q16881 649 aa24.31■■□□□ 1.48
ITGB1-215ENST00000488494 PROM2Q8N271 834 aa24.31■■□□□ 1.48
ITGB1-215ENST00000488494 MORC1Q86VD1 984 aa24.3■■□□□ 1.48
ITGB1-215ENST00000488494 PCDH11XQ9BZA7 1347 aa24.3■■□□□ 1.48
ITGB1-215ENST00000488494 PCDH11YQ9BZA8 1340 aa24.3■■□□□ 1.48
ITGB1-215ENST00000488494 PAPPAQ13219 1627 aa24.28■■□□□ 1.48
ITGB1-215ENST00000488494 EIF4A2Q14240 407 aaKnown RBP24.28■■□□□ 1.48
ITGB1-215ENST00000488494 SYTL4Q96C24 671 aaPredicted RBP24.28■■□□□ 1.48
ITGB1-215ENST00000488494 EYA1Q99502 592 aa24.28■■□□□ 1.48
ITGB1-215ENST00000488494 AMER1Q5JTC6 1135 aaPredicted RBP24.27■■□□□ 1.48
ITGB1-215ENST00000488494 CASZ1Q86V15 1759 aa24.26■■□□□ 1.47
ITGB1-215ENST00000488494 PRIM1P49642 420 aaKnown RBP24.25■■□□□ 1.47
ITGB1-215ENST00000488494 TOGARAM1Q9Y4F4 1720 aa24.24■■□□□ 1.47
ITGB1-215ENST00000488494 KAT6BQ8WYB5 2073 aa24.23■■□□□ 1.47
ITGB1-215ENST00000488494 STK32BQ9NY57 414 aa24.22■■□□□ 1.47
ITGB1-215ENST00000488494 IGSF1Q8N6C5 1336 aa24.21■■□□□ 1.47
ITGB1-215ENST00000488494 CYP27B1O15528 508 aa24.21■■□□□ 1.47
ITGB1-215ENST00000488494 LY75O60449 1722 aa24.21■■□□□ 1.47
ITGB1-215ENST00000488494 SPG7Q9UQ90 795 aa24.19■■□□□ 1.46
ITGB1-215ENST00000488494 PER1O15534 1290 aaPredicted RBP24.18■■□□□ 1.46
ITGB1-215ENST00000488494 CC2D1BQ5T0F9 858 aaKnown RBP24.18■■□□□ 1.46
ITGB1-215ENST00000488494 LRRC4BQ9NT99 713 aa24.18■■□□□ 1.46
ITGB1-215ENST00000488494 SLC15A2Q16348 729 aa24.17■■□□□ 1.46
ITGB1-215ENST00000488494 PLEKHG2Q9H7P9 1386 aa24.16■■□□□ 1.46
ITGB1-215ENST00000488494 PDGFDQ9GZP0 370 aaPredicted RBP24.16■■□□□ 1.46
ITGB1-215ENST00000488494 SLC27A3Q5K4L6 730 aa24.15■■□□□ 1.46
ITGB1-215ENST00000488494 ZNF827Q17R98 1081 aa24.14■■□□□ 1.45
ITGB1-215ENST00000488494 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.14■■□□□ 1.458e-14■□□□□ 11.3
ITGB1-215ENST00000488494 ITGB4P16144 1822 aa24.14■■□□□ 1.45
ITGB1-215ENST00000488494 NPC1L1Q9UHC9 1359 aa24.14■■□□□ 1.45
ITGB1-215ENST00000488494 KCNQ4P56696 695 aa24.13■■□□□ 1.45
ITGB1-215ENST00000488494 SPON1Q9HCB6 807 aa24.13■■□□□ 1.45
ITGB1-215ENST00000488494 CNGB1Q14028 1251 aaPredicted RBP24.12■■□□□ 1.45
ITGB1-215ENST00000488494 AEBP1Q8IUX7 1158 aa24.12■■□□□ 1.45
ITGB1-215ENST00000488494 NKX1-1Q15270 411 aaPredicted RBP24.11■■□□□ 1.45
ITGB1-215ENST00000488494 MPRIPQ6WCQ1 1025 aa24.11■■□□□ 1.45
ITGB1-215ENST00000488494 TUBGCP6Q96RT7 1819 aa24.1■■□□□ 1.45
ITGB1-215ENST00000488494 ZBTB7AO95365 584 aa24.1■■□□□ 1.45
ITGB1-215ENST00000488494 PHKG2P15735 406 aa24.1■■□□□ 1.45
ITGB1-215ENST00000488494 MTHFSP49914 203 aa24.1■■□□□ 1.45
ITGB1-215ENST00000488494 CCNL1Q9UK58 526 aaPredicted RBP24.1■■□□□ 1.45
ITGB1-215ENST00000488494 PALLDQ8WX93 1383 aa24.1■■□□□ 1.45
ITGB1-215ENST00000488494 QSER1Q2KHR3 1735 aa24.1■■□□□ 1.45
ITGB1-215ENST00000488494 C5P01031 1676 aa24.09■■□□□ 1.45
ITGB1-215ENST00000488494 IL13P35225 146 aa24.09■■□□□ 1.45
ITGB1-215ENST00000488494 IFNL2Q8IZJ0 200 aa24.09■■□□□ 1.45
ITGB1-215ENST00000488494 KDRP35968 1356 aa24.08■■□□□ 1.45
ITGB1-215ENST00000488494 AKT1S1Q96B36 256 aa24.08■■□□□ 1.45
ITGB1-215ENST00000488494 SULT6B1Q6IMI4 303 aa24.07■■□□□ 1.44
ITGB1-215ENST00000488494 PPP1R1BQ9UD71 204 aaPredicted RBP24.07■■□□□ 1.44
ITGB1-215ENST00000488494 COL3A1P02461 1466 aaPredicted RBP24.06■■□□□ 1.44
ITGB1-215ENST00000488494 ZNF530Q6P9A1 599 aaPredicted RBP24.05■■□□□ 1.44
ITGB1-215ENST00000488494 PIGBQ92521 554 aa24.05■■□□□ 1.44
ITGB1-215ENST00000488494 PLEKHO1Q53GL0 409 aaPredicted RBP24.04■■□□□ 1.44
ITGB1-215ENST00000488494 TMOD3Q9NYL9 352 aa24.04■■□□□ 1.44
ITGB1-215ENST00000488494 KDM6AO15550 1401 aaPredicted RBP24.03■■□□□ 1.44
ITGB1-215ENST00000488494 ATF5Q9Y2D1 282 aaPredicted RBP24.03■■□□□ 1.44
ITGB1-215ENST00000488494 AMOTQ4VCS5 1084 aa24.02■■□□□ 1.44
ITGB1-215ENST00000488494 MTFR1LQ9H019 292 aa24.02■■□□□ 1.44
ITGB1-215ENST00000488494 TFCP2L1Q9NZI6 479 aa24.02■■□□□ 1.44
ITGB1-215ENST00000488494 TAF1LQ8IZX4 1826 aa24.02■■□□□ 1.44
ITGB1-215ENST00000488494 PTGER2P43116 358 aa24.01■■□□□ 1.43
ITGB1-215ENST00000488494 SMARCC1Q92922 1105 aaPredicted RBP24.01■■□□□ 1.43
ITGB1-215ENST00000488494 PNPLA7Q6ZV29 1317 aa24.01■■□□□ 1.43
ITGB1-215ENST00000488494 DIAPH1O60610 1272 aaKnown RBP24■■□□□ 1.43
ITGB1-215ENST00000488494 C4BP0C0L5 1744 aa23.99■■□□□ 1.43
ITGB1-215ENST00000488494 HSP90AB1P08238 724 aaKnown RBP23.99■■□□□ 1.43
ITGB1-215ENST00000488494 DCAF5Q96JK2 942 aa23.99■■□□□ 1.43
ITGB1-215ENST00000488494 HMOX1P09601 288 aa23.98■■□□□ 1.43
ITGB1-215ENST00000488494 C1orf141Q5JVX7 400 aa23.98■■□□□ 1.43
ITGB1-215ENST00000488494 ASAP1Q9ULH1 1129 aa23.97■■□□□ 1.43
ITGB1-215ENST00000488494 SGIP1Q9BQI5 828 aa23.95■■□□□ 1.42
ITGB1-215ENST00000488494 LOC102724428A0A0B4J2F2 783 aa23.94■■□□□ 1.42
ITGB1-215ENST00000488494 ERVV-2B6SEH9 535 aa23.94■■□□□ 1.42
ITGB1-215ENST00000488494 SIK1P57059 783 aa23.94■■□□□ 1.42
ITGB1-215ENST00000488494 COL24A1Q17RW2 1714 aa23.93■■□□□ 1.42
ITGB1-215ENST00000488494 ATG3Q9NT62 314 aa23.93■■□□□ 1.42
ITGB1-215ENST00000488494 SCN11AQ9UI33 1791 aa23.93■■□□□ 1.42
ITGB1-215ENST00000488494 U2SURPO15042 1029 aaKnown RBP23.92■■□□□ 1.42
ITGB1-215ENST00000488494 CABP4P57796 275 aa23.91■■□□□ 1.42
ITGB1-215ENST00000488494 SLC16A10Q8TF71 515 aa23.91■■□□□ 1.42
ITGB1-215ENST00000488494 AK7Q96M32 723 aa23.91■■□□□ 1.42
ITGB1-215ENST00000488494 MSH5O43196 834 aa23.9■■□□□ 1.42
ITGB1-215ENST00000488494 HMGB2P26583 209 aaKnown RBP23.9■■□□□ 1.42
ITGB1-215ENST00000488494 LINC00116Q8NCU8 138 aa23.9■■□□□ 1.42
ITGB1-215ENST00000488494 CFAP53Q96M91 514 aa23.9■■□□□ 1.42
ITGB1-215ENST00000488494 UBR3Q6ZT12 1888 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms