RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 USP6P35125 1406 aa22.31■■□□□ 1.16
VIM-206ENST00000487938 NRKQ7Z2Y5 1582 aa22.31■■□□□ 1.16
VIM-206ENST00000487938 SLC4A2P04920 1241 aa22.31■■□□□ 1.16
VIM-206ENST00000487938 OTUD7AQ8TE49 926 aaPredicted RBP22.31■■□□□ 1.16
VIM-206ENST00000487938 HSP90AA1P07900 732 aaKnown RBP22.31■■□□□ 1.16
VIM-206ENST00000487938 EID1Q9Y6B2 187 aa22.31■■□□□ 1.16
VIM-206ENST00000487938 RGS12O14924 1447 aa22.3■■□□□ 1.16
VIM-206ENST00000487938 SMARCA5O60264 1052 aaPredicted RBP22.3■■□□□ 1.16
VIM-206ENST00000487938 HAP1P54257 671 aaPredicted RBP22.3■■□□□ 1.16
VIM-206ENST00000487938 CEP85Q6P2H3 762 aa22.3■■□□□ 1.16
VIM-206ENST00000487938 TNPO1Q92973 898 aaKnown RBP22.3■■□□□ 1.16
VIM-206ENST00000487938 MEIS3Q99687 375 aa22.3■■□□□ 1.16
VIM-206ENST00000487938 GOLGA6L3A6NEY3 463 aa22.29■■□□□ 1.16
VIM-206ENST00000487938 PEAK1Q9H792 1746 aa22.29■■□□□ 1.16
VIM-206ENST00000487938 MAP3K19Q56UN5 1328 aa22.29■■□□□ 1.16
VIM-206ENST00000487938 MTHFSDQ2M296 383 aaKnown RBP22.29■■□□□ 1.16
VIM-206ENST00000487938 ANO8Q9HCE9 1232 aaPredicted RBP22.29■■□□□ 1.16
VIM-206ENST00000487938 MSH6P52701 1360 aa22.28■■□□□ 1.16
VIM-206ENST00000487938 TTC22Q5TAA0 569 aa22.28■■□□□ 1.16
VIM-206ENST00000487938 RPAP2Q8IXW5 612 aaPredicted RBP22.28■■□□□ 1.16
VIM-206ENST00000487938 KIAA0232Q92628 1395 aa22.28■■□□□ 1.16
VIM-206ENST00000487938 XRCC6P12956 609 aaKnown RBP eCLIP22.28■■□□□ 1.16
VIM-206ENST00000487938 K7ELQ4 463 aaPredicted RBP22.27■■□□□ 1.16
VIM-206ENST00000487938 CRB1P82279 1406 aa22.27■■□□□ 1.16
VIM-206ENST00000487938 PTPRUQ92729 1446 aa22.27■■□□□ 1.16
VIM-206ENST00000487938 ATP10DQ9P241 1426 aa22.27■■□□□ 1.16
VIM-206ENST00000487938 G2E3Q7L622 706 aa22.27■■□□□ 1.16
VIM-206ENST00000487938 AMOTL2Q9Y2J4 779 aa22.27■■□□□ 1.16
VIM-206ENST00000487938 PTPRCP08575 1304 aa22.26■■□□□ 1.15
VIM-206ENST00000487938 DDX11L8A8MPP1 907 aa22.26■■□□□ 1.15
VIM-206ENST00000487938 SLC4A10Q6U841 1118 aa22.26■■□□□ 1.15
VIM-206ENST00000487938 RTF1Q92541 710 aaKnown RBP22.26■■□□□ 1.15
VIM-206ENST00000487938 RTL1A6NKG5 1358 aa22.26■■□□□ 1.15
VIM-206ENST00000487938 USP31Q70CQ4 1352 aa22.26■■□□□ 1.15
VIM-206ENST00000487938 FSD2A1L4K1 749 aa22.26■■□□□ 1.15
VIM-206ENST00000487938 TSPYL4Q9UJ04 414 aa22.26■■□□□ 1.15
VIM-206ENST00000487938 F6X3S4 739 aa22.25■■□□□ 1.15
VIM-206ENST00000487938 NGDNQ8NEJ9 315 aaKnown RBP22.24■■□□□ 1.15
VIM-206ENST00000487938 CIZ1Q9ULV3 898 aaPredicted RBP22.24■■□□□ 1.15
VIM-206ENST00000487938 RAB3GAP1Q15042 981 aa22.24■■□□□ 1.15
VIM-206ENST00000487938 GAS2L2Q8NHY3 880 aa22.24■■□□□ 1.15
VIM-206ENST00000487938 AMPHP49418 695 aa22.23■■□□□ 1.15
VIM-206ENST00000487938 FAM43AQ8N2R8 423 aa22.23■■□□□ 1.15
VIM-206ENST00000487938 TOPAZ1Q8N9V7 1692 aa22.23■■□□□ 1.15
VIM-206ENST00000487938 PANK2Q9BZ23 570 aa22.23■■□□□ 1.15
VIM-206ENST00000487938 SLIT1O75093 1534 aa22.22■■□□□ 1.15
VIM-206ENST00000487938 ARHGAP23Q9P227 1491 aa22.22■■□□□ 1.15
VIM-206ENST00000487938 SDSP20132 328 aa22.22■■□□□ 1.15
VIM-206ENST00000487938 EYA1Q99502 592 aa22.22■■□□□ 1.15
VIM-206ENST00000487938 SSH2Q76I76 1423 aa22.22■■□□□ 1.15
VIM-206ENST00000487938 RGPD1P0DJD0 1748 aa22.22■■□□□ 1.15
VIM-206ENST00000487938 USP26Q9BXU7 913 aa22.21■■□□□ 1.15
VIM-206ENST00000487938 RIMS1Q86UR5 1692 aaKnown RBP22.2■■□□□ 1.15
VIM-206ENST00000487938 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.2■■□□□ 1.15
VIM-206ENST00000487938 TBX22Q9Y458 520 aa22.2■■□□□ 1.15
VIM-206ENST00000487938 ARHGEF10O15013 1369 aa22.2■■□□□ 1.14
VIM-206ENST00000487938 THEMISQ8N1K5 641 aaPredicted RBP22.2■■□□□ 1.14
VIM-206ENST00000487938 GBP4Q96PP9 640 aa22.2■■□□□ 1.14
VIM-206ENST00000487938 TTC21AQ8NDW8 1320 aa22.2■■□□□ 1.14
VIM-206ENST00000487938 NUTM2GQ5VZR2 741 aa22.19■■□□□ 1.14
VIM-206ENST00000487938 NALCNQ8IZF0 1738 aa22.19■■□□□ 1.14
VIM-206ENST00000487938 NECTIN2Q92692 538 aa22.18■■□□□ 1.14
VIM-206ENST00000487938 SBNO1A3KN83 1393 aa22.18■■□□□ 1.14
VIM-206ENST00000487938 FLT4P35916 1363 aa22.18■■□□□ 1.14
VIM-206ENST00000487938 SSFA2P28290 1259 aa22.18■■□□□ 1.14
VIM-206ENST00000487938 FER1L4A9Z1Z3 1794 aa22.17■■□□□ 1.14
VIM-206ENST00000487938 NLRP6P59044 892 aa22.17■■□□□ 1.14
VIM-206ENST00000487938 RABEP1Q15276 862 aa22.16■■□□□ 1.14
VIM-206ENST00000487938 HMMRO75330 724 aa22.15■■□□□ 1.14
VIM-206ENST00000487938 CCT4P50991 539 aaKnown RBP22.15■■□□□ 1.14
VIM-206ENST00000487938 CEP170BQ9Y4F5 1589 aaPredicted RBP22.14■■□□□ 1.14
VIM-206ENST00000487938 RRAGDQ9NQL2 400 aaPredicted RBP22.14■■□□□ 1.14
VIM-206ENST00000487938 IGSF1Q8N6C5 1336 aa22.14■■□□□ 1.13
VIM-206ENST00000487938 CASC1Q6TDU7 716 aa22.14■■□□□ 1.13
VIM-206ENST00000487938 STK31Q9BXU1 1019 aa22.14■■□□□ 1.13
VIM-206ENST00000487938 RGPD8O14715 1765 aaPredicted RBP22.14■■□□□ 1.13
VIM-206ENST00000487938 KDRP35968 1356 aa22.13■■□□□ 1.13
VIM-206ENST00000487938 EIF5BO60841 1220 aaKnown RBP22.13■■□□□ 1.13
VIM-206ENST00000487938 TRHP20396 242 aaPredicted RBP22.13■■□□□ 1.13
VIM-206ENST00000487938 MRE11P49959 708 aa22.13■■□□□ 1.13
VIM-206ENST00000487938 LTV1Q96GA3 475 aaPredicted RBP22.13■■□□□ 1.13
VIM-206ENST00000487938 EXOC6BQ9Y2D4 811 aa22.13■■□□□ 1.13
VIM-206ENST00000487938 GRPEL1Q9HAV7 217 aa22.12■■□□□ 1.13
VIM-206ENST00000487938 FMN2Q9NZ56 1722 aa22.12■■□□□ 1.13
VIM-206ENST00000487938 GNAI2P04899 355 aa22.11■■□□□ 1.13
VIM-206ENST00000487938 TSHZ3Q63HK5 1081 aa22.11■■□□□ 1.13
VIM-206ENST00000487938 FKBP5Q13451 457 aaPredicted RBP22.11■■□□□ 1.13
VIM-206ENST00000487938 GNAT3A8MTJ3 354 aa22.1■■□□□ 1.13
VIM-206ENST00000487938 PDE1AP54750 535 aa22.1■■□□□ 1.13
VIM-206ENST00000487938 FLIIQ13045 1269 aa22.1■■□□□ 1.13
VIM-206ENST00000487938 DIP2AQ14689 1571 aa22.1■■□□□ 1.13
VIM-206ENST00000487938 GAS2L3Q86XJ1 694 aa22.1■■□□□ 1.13
VIM-206ENST00000487938 AK9Q5TCS8 1911 aa22.09■■□□□ 1.13
VIM-206ENST00000487938 SKOR2Q2VWA4 1001 aaPredicted RBP22.09■■□□□ 1.13
VIM-206ENST00000487938 HOXC9P31274 260 aa22.09■■□□□ 1.13
VIM-206ENST00000487938 CCDC30Q5VVM6 783 aa22.08■■□□□ 1.13
VIM-206ENST00000487938 IL17REQ8NFR9 667 aa22.08■■□□□ 1.13
VIM-206ENST00000487938 PNMA6EA0A0J9YXQ4 647 aa22.08■■□□□ 1.12
VIM-206ENST00000487938 ERC2O15083 957 aa22.08■■□□□ 1.12
VIM-206ENST00000487938 BAG4O95429 457 aaKnown RBP22.08■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms