RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 GOLGA6L4A6NEF3 574 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 SDSP20132 328 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 TAF7LQ5H9L4 462 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 SPTLC3Q9NUV7 552 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 PYCARDQ9ULZ3 195 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 IL16Q14005 1332 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 BRD1O95696 1058 aa7.49□□□□□ -1.21
VPS13D-209ENST00000487188 ANKRD36BQ8N2N9 1353 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 SMTNL1A8MU46 457 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 CCDC192P0DO97 292 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 CHMP3Q9Y3E7 222 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 ARHGEF5Q12774 1597 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 ZBTB7BO15156 539 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-209ENST00000487188 HTATSF1O43719 755 aaKnown RBP7.48□□□□□ -1.21
VPS13D-209ENST00000487188 SMARCA5O60264 1052 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-209ENST00000487188 MX1P20591 662 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 GIMAP6Q6P9H5 292 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 AEBP1Q8IUX7 1158 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 C16orf71Q8IYS4 520 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-209ENST00000487188 RILPL2Q969X0 211 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 ABCC1P33527 1531 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 ADAMTSL3P82987 1691 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 ERVK-7P63135 1459 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 DIAPH1O60610 1272 aaKnown RBP7.48□□□□□ -1.21
VPS13D-209ENST00000487188 HMMRO75330 724 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 KIAA1524Q8TCG1 905 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 ANKRD7Q92527 254 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 ZNF428Q96B54 188 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 TRIM5Q9C035 493 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 POGZQ7Z3K3 1410 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 IQGAP1P46940 1657 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 ADGRL1O94910 1474 aa7.48□□□□□ -1.21
VPS13D-209ENST00000487188 PTGS1P23219 599 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 SAFB2Q14151 953 aaKnown RBP eCLIP7.47□□□□□ -1.21
VPS13D-209ENST00000487188 UPF3BQ9BZI7 483 aaKnown RBP7.47□□□□□ -1.21
VPS13D-209ENST00000487188 TSPYL1Q9H0U9 437 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 ARHGAP31Q2M1Z3 1444 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 SAMD9LQ8IVG5 1584 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 NCBP1Q09161 790 aaKnown RBP7.47□□□□□ -1.21
VPS13D-209ENST00000487188 GGNBP2Q9H3C7 697 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 CNPY2Q9Y2B0 182 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 ZNF518AQ6AHZ1 1483 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 SYCP2Q9BX26 1530 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 MAST1Q9Y2H9 1570 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 IRX5P78411 483 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-209ENST00000487188 NCBP3Q53F19 620 aaKnown RBP7.47□□□□□ -1.21
VPS13D-209ENST00000487188 TRIM34Q9BYJ4 488 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 TRIM35Q9UPQ4 493 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 SMC3Q9UQE7 1217 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 MADDQ8WXG6 1647 aa7.47□□□□□ -1.21
VPS13D-209ENST00000487188 NPHP1O15259 732 aa7.46□□□□□ -1.21
VPS13D-209ENST00000487188 UBE2HP62256 183 aa7.46□□□□□ -1.21
VPS13D-209ENST00000487188 SRPK2P78362 688 aaKnown RBP7.46□□□□□ -1.21
VPS13D-209ENST00000487188 ZNF397Q8NF99 534 aaPredicted RBP7.46□□□□□ -1.21
VPS13D-209ENST00000487188 RTF1Q92541 710 aaKnown RBP7.46□□□□□ -1.21
VPS13D-209ENST00000487188 GNAI1P63096 354 aa7.46□□□□□ -1.22
VPS13D-209ENST00000487188 TEX35Q5T0J7 233 aa7.46□□□□□ -1.22
VPS13D-209ENST00000487188 OTUD7AQ8TE49 926 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-209ENST00000487188 PAXBP1Q9Y5B6 917 aa7.46□□□□□ -1.22
VPS13D-209ENST00000487188 MYOM1P52179 1685 aa7.46□□□□□ -1.22
VPS13D-209ENST00000487188 RAPGEF3O95398 923 aa7.46□□□□□ -1.22
VPS13D-209ENST00000487188 CCDC186Q7Z3E2 898 aa7.46□□□□□ -1.22
VPS13D-209ENST00000487188 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS13D-209ENST00000487188 V9GYY5 206 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-209ENST00000487188 NOS1P29475 1434 aa7.46□□□□□ -1.22
VPS13D-209ENST00000487188 VPS37CA5D8V6 355 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 IRX3P78415 501 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 TWISTNBQ3B726 338 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 EVC2Q86UK5 1308 aa7.45□□□□□ -1.22
VPS13D-209ENST00000487188 CEP152O94986 1710 aa7.45□□□□□ -1.22
VPS13D-209ENST00000487188 PRKAR2BP31323 418 aa7.45□□□□□ -1.22
VPS13D-209ENST00000487188 PAXIP1Q6ZW49 1069 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 MRPL50Q8N5N7 158 aaKnown RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 INTS4Q96HW7 963 aaKnown RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 CTNNA3Q9UI47 895 aa7.45□□□□□ -1.22
VPS13D-209ENST00000487188 ADGRF5Q8IZF2 1346 aa7.45□□□□□ -1.22
VPS13D-209ENST00000487188 UNC13BO14795 1591 aa7.45□□□□□ -1.22
VPS13D-209ENST00000487188 ARHGAP45Q92619 1136 aa7.45□□□□□ -1.22
VPS13D-209ENST00000487188 NOL10Q9BSC4 688 aaKnown RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 THUMPD2Q9BTF0 503 aaKnown RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 SENP3Q9H4L4 574 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 DCTPP1Q9H773 170 aa7.45□□□□□ -1.22
VPS13D-209ENST00000487188 DDX41Q9UJV9 622 aaKnown RBP7.45□□□□□ -1.22
VPS13D-209ENST00000487188 PTPRTO14522 1441 aa7.45□□□□□ -1.22
VPS13D-209ENST00000487188 CEP135Q66GS9 1140 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 SRCIN1Q9C0H9 1055 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 DUOX2Q9NRD8 1548 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 REREQ9P2R6 1566 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 KIDINS220Q9ULH0 1771 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 IQGAP3Q86VI3 1631 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 GOLGA6L19H0YKK7 550 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 CTIFO43310 598 aaKnown RBP7.44□□□□□ -1.22
VPS13D-209ENST00000487188 TERF2Q15554 542 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 SIRT2Q8IXJ6 389 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-209ENST00000487188 ZFYVE16Q7Z3T8 1539 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 YEATS2Q9ULM3 1422 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 SPAG9O60271 1321 aaKnown RBP7.44□□□□□ -1.22
VPS13D-209ENST00000487188 SYCP1Q15431 976 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 MAP3K11Q16584 847 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms