RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 PUS7Q96PZ0 661 aaKnown RBP13.09□□□□□ -0.31
TMEM39A-208ENST00000486159 KAT6BQ8WYB5 2073 aa13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 HOXC9P31274 260 aa13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 PTGER2P43116 358 aa13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 CACNB1Q02641 598 aaPredicted RBP13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 USHBP1Q8N6Y0 703 aa13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 COG3Q96JB2 828 aa13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 SPINK5Q9NQ38 1064 aaPredicted RBP13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 LRRC4BQ9NT99 713 aa13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 PPP1R1BQ9UD71 204 aaPredicted RBP13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 BTAF1O14981 1849 aa13.08□□□□□ -0.32
TMEM39A-208ENST00000486159 FYB1O15117 783 aa13.07□□□□□ -0.32
TMEM39A-208ENST00000486159 SLC34A2O95436 690 aa13.07□□□□□ -0.32
TMEM39A-208ENST00000486159 SLC15A2Q16348 729 aa13.07□□□□□ -0.32
TMEM39A-208ENST00000486159 USP47Q96K76 1375 aa13.07□□□□□ -0.32
TMEM39A-208ENST00000486159 MYOM1P52179 1685 aa13.06□□□□□ -0.32
TMEM39A-208ENST00000486159 FAM208AQ9UK61 1670 aaKnown RBP13.06□□□□□ -0.32
TMEM39A-208ENST00000486159 AMPHP49418 695 aa13.06□□□□□ -0.32
TMEM39A-208ENST00000486159 ZNF827Q17R98 1081 aa13.06□□□□□ -0.32
TMEM39A-208ENST00000486159 STK32BQ9NY57 414 aa13.06□□□□□ -0.32
TMEM39A-208ENST00000486159 SHANK3Q9BYB0 1731 aa13.05□□□□□ -0.32
TMEM39A-208ENST00000486159 CAPN15O75808 1086 aa13.05□□□□□ -0.32
TMEM39A-208ENST00000486159 NBPF6Q5VWK0 638 aa13.05□□□□□ -0.32
TMEM39A-208ENST00000486159 NBPF4Q96M43 638 aa13.05□□□□□ -0.32
TMEM39A-208ENST00000486159 CARD14Q9BXL6 1004 aa13.05□□□□□ -0.32
TMEM39A-208ENST00000486159 ZNF219Q9P2Y4 722 aaPredicted RBP13.05□□□□□ -0.32
TMEM39A-208ENST00000486159 ANKRD36BQ8N2N9 1353 aa13.05□□□□□ -0.32
TMEM39A-208ENST00000486159 MEGF6O75095 1541 aa13.04□□□□□ -0.32
TMEM39A-208ENST00000486159 TMF1P82094 1093 aa13.04□□□□□ -0.32
TMEM39A-208ENST00000486159 DIEXFQ68CQ4 756 aaKnown RBP13.04□□□□□ -0.32
TMEM39A-208ENST00000486159 ZNF784Q8NCA9 323 aaPredicted RBP13.04□□□□□ -0.32
TMEM39A-208ENST00000486159 PAPPAQ13219 1627 aa13.03□□□□□ -0.32
TMEM39A-208ENST00000486159 PRIM1P49642 420 aaKnown RBP13.03□□□□□ -0.32
TMEM39A-208ENST00000486159 HSP90AB2PQ58FF8 381 aa13.03□□□□□ -0.32
TMEM39A-208ENST00000486159 SYTL4Q96C24 671 aaPredicted RBP13.02□□□□□ -0.33
TMEM39A-208ENST00000486159 SGIP1Q9BQI5 828 aa13.02□□□□□ -0.33
TMEM39A-208ENST00000486159 NINLQ9Y2I6 1382 aa13.02□□□□□ -0.33
TMEM39A-208ENST00000486159 FHDC1Q9C0D6 1143 aaPredicted RBP13.01□□□□□ -0.33
TMEM39A-208ENST00000486159 NSD2O96028 1365 aa13.01□□□□□ -0.33
TMEM39A-208ENST00000486159 DOT1LQ8TEK3 1739 aa13.01□□□□□ -0.33
TMEM39A-208ENST00000486159 ZCRB1Q8TBF4 217 aaKnown RBP13□□□□□ -0.33
TMEM39A-208ENST00000486159 AKT1S1Q96B36 256 aa13□□□□□ -0.33
TMEM39A-208ENST00000486159 EMILIN1Q9Y6C2 1016 aa13□□□□□ -0.33
TMEM39A-208ENST00000486159 CEP350Q5VT06 3117 aa12.99□□□□□ -0.33
TMEM39A-208ENST00000486159 KIF20BQ96Q89 1820 aa12.99□□□□□ -0.33
TMEM39A-208ENST00000486159 TUBGCP6Q96RT7 1819 aa12.99□□□□□ -0.33
TMEM39A-208ENST00000486159 SYT17Q9BSW7 474 aa12.98□□□□□ -0.33
TMEM39A-208ENST00000486159 MTFR1LQ9H019 292 aa12.98□□□□□ -0.33
TMEM39A-208ENST00000486159 NSD3Q9BZ95 1437 aa12.97□□□□□ -0.33
TMEM39A-208ENST00000486159 POLR3GLQ9BT43 218 aa12.97□□□□□ -0.33
TMEM39A-208ENST00000486159 PNPLA7Q6ZV29 1317 aa12.96□□□□□ -0.33
TMEM39A-208ENST00000486159 LY75O60449 1722 aa12.96□□□□□ -0.34
TMEM39A-208ENST00000486159 RTL1A6NKG5 1358 aa12.95□□□□□ -0.34
TMEM39A-208ENST00000486159 PPM1GO15355 546 aaPredicted RBP12.95□□□□□ -0.34
TMEM39A-208ENST00000486159 SLC24A1O60721 1099 aa12.95□□□□□ -0.34
TMEM39A-208ENST00000486159 SMIM5Q71RC9 77 aa12.95□□□□□ -0.34
TMEM39A-208ENST00000486159 INSRP06213 1382 aa12.94□□□□□ -0.34
TMEM39A-208ENST00000486159 CYP27B1O15528 508 aa12.94□□□□□ -0.34
TMEM39A-208ENST00000486159 ARXQ96QS3 562 aa12.94□□□□□ -0.34
TMEM39A-208ENST00000486159 TATP17735 454 aaPredicted RBP12.93□□□□□ -0.34
TMEM39A-208ENST00000486159 TNNT2P45379 298 aaPredicted RBP12.93□□□□□ -0.34
TMEM39A-208ENST00000486159 KLHL34Q8N239 644 aa12.93□□□□□ -0.34
TMEM39A-208ENST00000486159 RAPGEF4Q8WZA2 1011 aa12.93□□□□□ -0.34
TMEM39A-208ENST00000486159 TFCP2L1Q9NZI6 479 aa12.93□□□□□ -0.34
TMEM39A-208ENST00000486159 PCDH10Q9P2E7 1040 aa12.93□□□□□ -0.34
TMEM39A-208ENST00000486159 CCNL1Q9UK58 526 aaPredicted RBP12.93□□□□□ -0.34
TMEM39A-208ENST00000486159 TOGARAM1Q9Y4F4 1720 aa12.93□□□□□ -0.34
TMEM39A-208ENST00000486159 FLT4P35916 1363 aa12.93□□□□□ -0.34
TMEM39A-208ENST00000486159 SLC27A3Q5K4L6 730 aa12.92□□□□□ -0.34
TMEM39A-208ENST00000486159 AMIGO3Q86WK7 504 aa12.92□□□□□ -0.34
TMEM39A-208ENST00000486159 COL23A1Q86Y22 540 aaPredicted RBP12.92□□□□□ -0.34
TMEM39A-208ENST00000486159 MAP2P11137 1827 aaKnown RBP12.92□□□□□ -0.34
TMEM39A-208ENST00000486159 UTRNP46939 3433 aa12.91□□□□□ -0.34
TMEM39A-208ENST00000486159 CDCA8Q53HL2 280 aa12.91□□□□□ -0.34
TMEM39A-208ENST00000486159 MPRIPQ6WCQ1 1025 aa12.91□□□□□ -0.34
TMEM39A-208ENST00000486159 EYA1Q99502 592 aa12.91□□□□□ -0.34
TMEM39A-208ENST00000486159 QSER1Q2KHR3 1735 aa12.91□□□□□ -0.34
TMEM39A-208ENST00000486159 ITGB4P16144 1822 aa12.9□□□□□ -0.34
TMEM39A-208ENST00000486159 SMG6Q86US8 1419 aaKnown RBP12.9□□□□□ -0.34
TMEM39A-208ENST00000486159 HSPA5P11021 654 aaKnown RBP12.9□□□□□ -0.34
TMEM39A-208ENST00000486159 MSL1Q68DK7 614 aa12.9□□□□□ -0.34
TMEM39A-208ENST00000486159 NLGN2Q8NFZ4 835 aa12.9□□□□□ -0.34
TMEM39A-208ENST00000486159 POLKQ9UBT6 870 aa12.9□□□□□ -0.34
TMEM39A-208ENST00000486159 COL24A1Q17RW2 1714 aa12.9□□□□□ -0.34
TMEM39A-208ENST00000486159 PIGBQ92521 554 aa12.88□□□□□ -0.35
TMEM39A-208ENST00000486159 PKD1L3Q7Z443 1732 aa12.88□□□□□ -0.35
TMEM39A-208ENST00000486159 ANKRD26Q9UPS8 1709 aa12.88□□□□□ -0.35
TMEM39A-208ENST00000486159 CGNL1Q0VF96 1302 aa12.88□□□□□ -0.35
TMEM39A-208ENST00000486159 WASHC2AQ641Q2 1341 aa12.88□□□□□ -0.35
TMEM39A-208ENST00000486159 PCDH11XQ9BZA7 1347 aa12.88□□□□□ -0.35
TMEM39A-208ENST00000486159 PCDH11YQ9BZA8 1340 aa12.88□□□□□ -0.35
TMEM39A-208ENST00000486159 PALLDQ8WX93 1383 aa12.87□□□□□ -0.35
TMEM39A-208ENST00000486159 EIF4A2Q14240 407 aaKnown RBP12.87□□□□□ -0.35
TMEM39A-208ENST00000486159 PANK3Q9H999 370 aa12.87□□□□□ -0.35
TMEM39A-208ENST00000486159 TAF1LQ8IZX4 1826 aa12.87□□□□□ -0.35
TMEM39A-208ENST00000486159 NCAPD2Q15021 1401 aa12.87□□□□□ -0.35
TMEM39A-208ENST00000486159 C5P01031 1676 aa12.86□□□□□ -0.35
TMEM39A-208ENST00000486159 KIF24Q5T7B8 1368 aa12.86□□□□□ -0.35
TMEM39A-208ENST00000486159 PELP1Q8IZL8 1130 aaKnown RBP12.86□□□□□ -0.35
TMEM39A-208ENST00000486159 SLC16A10Q8TF71 515 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms