RNA–Protein interactions for RNA: ENST00000485628.2

APOE-205, Transcript of apolipoprotein E, humanhuman

TSL 1 (best)

Gene APOE, Length 771 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOE-205ENST00000485628 SHANK3Q9BYB0 1731 aa21.02■□□□□ 0.96
APOE-205ENST00000485628 IL2RBP14784 551 aa21.02■□□□□ 0.96
APOE-205ENST00000485628 CCDC146Q8IYE0 955 aa21.01■□□□□ 0.95
APOE-205ENST00000485628 CDCA7Q9BWT1 371 aaPredicted RBP21.01■□□□□ 0.95
APOE-205ENST00000485628 RAPGEF4Q8WZA2 1011 aa21■□□□□ 0.95
APOE-205ENST00000485628 PHF23Q9BUL5 403 aaPredicted RBP21■□□□□ 0.95
APOE-205ENST00000485628 TATP17735 454 aaPredicted RBP20.99■□□□□ 0.95
APOE-205ENST00000485628 MTHFSDQ2M296 383 aaKnown RBP20.99■□□□□ 0.95
APOE-205ENST00000485628 AMOTQ4VCS5 1084 aa20.99■□□□□ 0.95
APOE-205ENST00000485628 USP35Q9P2H5 1018 aa20.99■□□□□ 0.95
APOE-205ENST00000485628 DLG5Q8TDM6 1919 aa20.98■□□□□ 0.95
APOE-205ENST00000485628 APAF1O14727 1248 aa20.97■□□□□ 0.95
APOE-205ENST00000485628 TMPOP42166 694 aaKnown RBP20.97■□□□□ 0.95
APOE-205ENST00000485628 LRRC37A3O60309 1634 aa20.96■□□□□ 0.95
APOE-205ENST00000485628 ADAMTS7Q9UKP4 1686 aa20.96■□□□□ 0.95
APOE-205ENST00000485628 NFE2L2Q16236 605 aa20.96■□□□□ 0.95
APOE-205ENST00000485628 PLEKHO1Q53GL0 409 aaPredicted RBP20.96■□□□□ 0.95
APOE-205ENST00000485628 POTEAQ6S8J7 498 aa20.96■□□□□ 0.95
APOE-205ENST00000485628 RBM6P78332 1123 aaKnown RBP20.95■□□□□ 0.94
APOE-205ENST00000485628 NGEFQ8N5V2 710 aa20.95■□□□□ 0.94
APOE-205ENST00000485628 ZCRB1Q8TBF4 217 aaKnown RBP20.95■□□□□ 0.94
APOE-205ENST00000485628 CCDC9Q9Y3X0 531 aaKnown RBP20.95■□□□□ 0.94
APOE-205ENST00000485628 CYP27B1O15528 508 aa20.94■□□□□ 0.94
APOE-205ENST00000485628 FAM98CQ17RN3 349 aaKnown RBP20.94■□□□□ 0.94
APOE-205ENST00000485628 CCDC27Q2M243 656 aa20.94■□□□□ 0.94
APOE-205ENST00000485628 GAS2L2Q8NHY3 880 aa20.94■□□□□ 0.94
APOE-205ENST00000485628 TNS2Q63HR2 1409 aa20.94■□□□□ 0.94
APOE-205ENST00000485628 NKX1-1Q15270 411 aaPredicted RBP20.93■□□□□ 0.94
APOE-205ENST00000485628 TRIM35Q9UPQ4 493 aa20.93■□□□□ 0.94
APOE-205ENST00000485628 SPG7Q9UQ90 795 aa20.93■□□□□ 0.94
APOE-205ENST00000485628 ZNF521Q96K83 1311 aa20.93■□□□□ 0.94
APOE-205ENST00000485628 MAPK8IP3Q9UPT6 1336 aa20.93■□□□□ 0.94
APOE-205ENST00000485628 HTATSF1O43719 755 aaKnown RBP20.92■□□□□ 0.94
APOE-205ENST00000485628 PHKG2P15735 406 aa20.91■□□□□ 0.94
APOE-205ENST00000485628 AKAP4Q5JQC9 854 aa20.91■□□□□ 0.94
APOE-205ENST00000485628 PCDH11XQ9BZA7 1347 aa20.9■□□□□ 0.94
APOE-205ENST00000485628 PCDH11YQ9BZA8 1340 aa20.9■□□□□ 0.94
APOE-205ENST00000485628 EXOC5O00471 708 aa20.9■□□□□ 0.94
APOE-205ENST00000485628 CEMIPQ8WUJ3 1361 aa20.89■□□□□ 0.93
APOE-205ENST00000485628 NEFMP07197 916 aa20.89■□□□□ 0.93
APOE-205ENST00000485628 RIPK4P57078 832 aa20.89■□□□□ 0.93
APOE-205ENST00000485628 ZNF530Q6P9A1 599 aaPredicted RBP20.89■□□□□ 0.93
APOE-205ENST00000485628 IFNL2Q8IZJ0 200 aa20.89■□□□□ 0.93
APOE-205ENST00000485628 MAP3K5Q99683 1374 aa20.88■□□□□ 0.93
APOE-205ENST00000485628 RXRBP28702 533 aa20.88■□□□□ 0.93
APOE-205ENST00000485628 DDB1Q16531 1140 aa20.88■□□□□ 0.93
APOE-205ENST00000485628 RRP7AQ9Y3A4 280 aaKnown RBP20.88■□□□□ 0.93
APOE-205ENST00000485628 VIRMAQ69YN4 1812 aaKnown RBP20.88■□□□□ 0.93
APOE-205ENST00000485628 BRWD3Q6RI45 1802 aa20.88■□□□□ 0.93
APOE-205ENST00000485628 BCL9O00512 1426 aa20.87■□□□□ 0.93
APOE-205ENST00000485628 SCN11AQ9UI33 1791 aa20.87■□□□□ 0.93
APOE-205ENST00000485628 GNAT3A8MTJ3 354 aa20.87■□□□□ 0.93
APOE-205ENST00000485628 WWC1Q8IX03 1113 aa20.87■□□□□ 0.93
APOE-205ENST00000485628 SEPT12Q8IYM1 358 aa20.87■□□□□ 0.93
APOE-205ENST00000485628 MARCH10Q8NA82 808 aaPredicted RBP20.87■□□□□ 0.93
APOE-205ENST00000485628 IL17REQ8NFR9 667 aa20.87■□□□□ 0.93
APOE-205ENST00000485628 KDM6AO15550 1401 aaPredicted RBP20.87■□□□□ 0.93
APOE-205ENST00000485628 HNRNPUQ00839 825 aaKnown RBP eCLIP20.84■□□□□ 0.93
APOE-205ENST00000485628 LGR6Q9HBX8 967 aa20.84■□□□□ 0.93
APOE-205ENST00000485628 ZBED9Q6R2W3 1325 aa20.83■□□□□ 0.93
APOE-205ENST00000485628 MRC1P22897 1456 aa20.83■□□□□ 0.93
APOE-205ENST00000485628 RNMTO43148 476 aaKnown RBP20.83■□□□□ 0.93
APOE-205ENST00000485628 LMOD3Q0VAK6 560 aa20.83■□□□□ 0.93
APOE-205ENST00000485628 NEUROD2Q15784 382 aa20.83■□□□□ 0.93
APOE-205ENST00000485628 C1orf141Q5JVX7 400 aa20.83■□□□□ 0.93
APOE-205ENST00000485628 DCAF5Q96JK2 942 aa20.83■□□□□ 0.93
APOE-205ENST00000485628 RGS12O14924 1447 aa20.83■□□□□ 0.93
APOE-205ENST00000485628 TOGARAM1Q9Y4F4 1720 aa20.83■□□□□ 0.92
APOE-205ENST00000485628 SIPA1L3O60292 1781 aaPredicted RBP20.82■□□□□ 0.92
APOE-205ENST00000485628 HSP90AB1P08238 724 aaKnown RBP20.82■□□□□ 0.92
APOE-205ENST00000485628 DDX54Q8TDD1 881 aaKnown RBP20.82■□□□□ 0.92
APOE-205ENST00000485628 SENP3-EIF4A1A0A087X0R7 540 aa20.81■□□□□ 0.92
APOE-205ENST00000485628 WDR63Q8IWG1 891 aa20.81■□□□□ 0.92
APOE-205ENST00000485628 ZNF853P0CG23 659 aa20.8■□□□□ 0.92
APOE-205ENST00000485628 DCTN1Q14203 1278 aa20.8■□□□□ 0.92
APOE-205ENST00000485628 MPRIPQ6WCQ1 1025 aa20.8■□□□□ 0.92
APOE-205ENST00000485628 MCM10Q7L590 875 aa20.8■□□□□ 0.92
APOE-205ENST00000485628 IL16Q14005 1332 aa20.79■□□□□ 0.92
APOE-205ENST00000485628 ERVV-2B6SEH9 535 aa20.79■□□□□ 0.92
APOE-205ENST00000485628 THUMPD2Q9BTF0 503 aaKnown RBP20.78■□□□□ 0.92
APOE-205ENST00000485628 ITGB4P16144 1822 aa20.77■□□□□ 0.92
APOE-205ENST00000485628 SBF2Q86WG5 1849 aa20.77■□□□□ 0.92
APOE-205ENST00000485628 PDE3BQ13370 1112 aa20.77■□□□□ 0.92
APOE-205ENST00000485628 TRMT2AQ8IZ69 625 aaKnown RBP20.77■□□□□ 0.92
APOE-205ENST00000485628 RTF1Q92541 710 aaKnown RBP20.77■□□□□ 0.92
APOE-205ENST00000485628 SALL2Q9Y467 1007 aaPredicted RBP20.77■□□□□ 0.92
APOE-205ENST00000485628 KRT27Q7Z3Y8 459 aa20.76■□□□□ 0.91
APOE-205ENST00000485628 SPINK5Q9NQ38 1064 aaPredicted RBP20.76■□□□□ 0.91
APOE-205ENST00000485628 CHL1O00533 1208 aa20.75■□□□□ 0.91
APOE-205ENST00000485628 SLC52A2Q9HAB3 445 aa20.75■□□□□ 0.91
APOE-205ENST00000485628 BABAM1Q9NWV8 329 aa20.75■□□□□ 0.91
APOE-205ENST00000485628 DOT1LQ8TEK3 1739 aa20.75■□□□□ 0.91
APOE-205ENST00000485628 CFAP44Q96MT7 982 aa20.73■□□□□ 0.91
APOE-205ENST00000485628 A0A0G2JS52 829 aa20.72■□□□□ 0.91
APOE-205ENST00000485628 MYT1Q01538 1121 aa20.72■□□□□ 0.91
APOE-205ENST00000485628 CALD1Q05682 793 aaKnown RBP20.72■□□□□ 0.91
APOE-205ENST00000485628 GOLGA2Q08379 1002 aa20.72■□□□□ 0.91
APOE-205ENST00000485628 SLFN5Q08AF3 891 aa20.72■□□□□ 0.91
APOE-205ENST00000485628 TAF7Q15545 349 aaPredicted RBP20.72■□□□□ 0.91
APOE-205ENST00000485628 IFT57Q9NWB7 429 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms