RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 PUS7Q96PZ0 661 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-208ENST00000485412 COL24A1Q17RW2 1714 aa19.54■□□□□ 0.72
SQSTM1-208ENST00000485412 SYTL4Q96C24 671 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-208ENST00000485412 TFCP2L1Q9NZI6 479 aa19.53■□□□□ 0.72
SQSTM1-208ENST00000485412 KIF20BQ96Q89 1820 aa19.53■□□□□ 0.72
SQSTM1-208ENST00000485412 MEGF6O75095 1541 aa19.52■□□□□ 0.72
SQSTM1-208ENST00000485412 PNPLA7Q6ZV29 1317 aa19.51■□□□□ 0.71
SQSTM1-208ENST00000485412 LY75O60449 1722 aa19.51■□□□□ 0.71
SQSTM1-208ENST00000485412 HOXC9P31274 260 aa19.51■□□□□ 0.71
SQSTM1-208ENST00000485412 GIGYF1O75420 1035 aaPredicted RBP19.5■□□□□ 0.71
SQSTM1-208ENST00000485412 ANKRD36BQ8N2N9 1353 aa19.49■□□□□ 0.71
SQSTM1-208ENST00000485412 KCNQ4P56696 695 aa19.49■□□□□ 0.71
SQSTM1-208ENST00000485412 RRS1Q15050 365 aaKnown RBP19.49■□□□□ 0.71
SQSTM1-208ENST00000485412 COG3Q96JB2 828 aa19.49■□□□□ 0.71
SQSTM1-208ENST00000485412 GOLGB1Q14789 3259 aaKnown RBP19.49■□□□□ 0.71
SQSTM1-208ENST00000485412 NSD2O96028 1365 aa19.48■□□□□ 0.71
SQSTM1-208ENST00000485412 PRIM1P49642 420 aaKnown RBP19.48■□□□□ 0.71
SQSTM1-208ENST00000485412 USP47Q96K76 1375 aa19.47■□□□□ 0.71
SQSTM1-208ENST00000485412 GGNBP2Q9H3C7 697 aa19.47■□□□□ 0.71
SQSTM1-208ENST00000485412 MSH5O43196 834 aa19.46■□□□□ 0.71
SQSTM1-208ENST00000485412 AMPHP49418 695 aa19.46■□□□□ 0.71
SQSTM1-208ENST00000485412 USHBP1Q8N6Y0 703 aa19.46■□□□□ 0.71
SQSTM1-208ENST00000485412 NLGN2Q8NFZ4 835 aa19.46■□□□□ 0.71
SQSTM1-208ENST00000485412 FYB1O15117 783 aa19.45■□□□□ 0.7
SQSTM1-208ENST00000485412 CCNL1Q9UK58 526 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-208ENST00000485412 NBPF6Q5VWK0 638 aa19.44■□□□□ 0.7
SQSTM1-208ENST00000485412 ZCRB1Q8TBF4 217 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-208ENST00000485412 NBPF4Q96M43 638 aa19.44■□□□□ 0.7
SQSTM1-208ENST00000485412 RTL1A6NKG5 1358 aa19.43■□□□□ 0.7
SQSTM1-208ENST00000485412 TOGARAM1Q9Y4F4 1720 aa19.42■□□□□ 0.7
SQSTM1-208ENST00000485412 GRIN3BO60391 1043 aa19.42■□□□□ 0.7
SQSTM1-208ENST00000485412 C5P01031 1676 aa19.4■□□□□ 0.7
SQSTM1-208ENST00000485412 ITGB4P16144 1822 aa19.39■□□□□ 0.7
SQSTM1-208ENST00000485412 YBX3P16989 372 aaKnown RBP eCLIP19.39■□□□□ 0.69
SQSTM1-208ENST00000485412 TMF1P82094 1093 aa19.39■□□□□ 0.69
SQSTM1-208ENST00000485412 HSP90AB2PQ58FF8 381 aa19.39■□□□□ 0.69
SQSTM1-208ENST00000485412 COL23A1Q86Y22 540 aaPredicted RBP19.39■□□□□ 0.69
SQSTM1-208ENST00000485412 TAF1LQ8IZX4 1826 aa19.39■□□□□ 0.69
SQSTM1-208ENST00000485412 MSL1Q68DK7 614 aa19.38■□□□□ 0.69
SQSTM1-208ENST00000485412 CARD14Q9BXL6 1004 aa19.38■□□□□ 0.69
SQSTM1-208ENST00000485412 ANKRD26Q9UPS8 1709 aa19.38■□□□□ 0.69
SQSTM1-208ENST00000485412 PKD1L3Q7Z443 1732 aa19.37■□□□□ 0.69
SQSTM1-208ENST00000485412 SMG6Q86US8 1419 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-208ENST00000485412 CGNL1Q0VF96 1302 aa19.36■□□□□ 0.69
SQSTM1-208ENST00000485412 RAPGEF4Q8WZA2 1011 aa19.36■□□□□ 0.69
SQSTM1-208ENST00000485412 MAP2P11137 1827 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-208ENST00000485412 NSD3Q9BZ95 1437 aa19.35■□□□□ 0.69
SQSTM1-208ENST00000485412 INSRP06213 1382 aa19.35■□□□□ 0.69
SQSTM1-208ENST00000485412 TATP17735 454 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-208ENST00000485412 HMGB2P26583 209 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-208ENST00000485412 TRIM26Q12899 539 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-208ENST00000485412 EMILIN1Q9Y6C2 1016 aa19.34■□□□□ 0.69
SQSTM1-208ENST00000485412 FLT4P35916 1363 aa19.33■□□□□ 0.69
SQSTM1-208ENST00000485412 SLC24A1O60721 1099 aa19.33■□□□□ 0.68
SQSTM1-208ENST00000485412 ATP10DQ9P241 1426 aa19.33■□□□□ 0.68
SQSTM1-208ENST00000485412 FLAD1Q8NFF5 587 aa19.32■□□□□ 0.68
SQSTM1-208ENST00000485412 PCDH11XQ9BZA7 1347 aa19.31■□□□□ 0.68
SQSTM1-208ENST00000485412 PCDH11YQ9BZA8 1340 aa19.31■□□□□ 0.68
SQSTM1-208ENST00000485412 CYP27B1O15528 508 aa19.31■□□□□ 0.68
SQSTM1-208ENST00000485412 CD2APQ9Y5K6 639 aa19.31■□□□□ 0.68
SQSTM1-208ENST00000485412 PALLDQ8WX93 1383 aa19.31■□□□□ 0.68
SQSTM1-208ENST00000485412 C4BP0C0L5 1744 aa19.29■□□□□ 0.68
SQSTM1-208ENST00000485412 NCAPD2Q15021 1401 aa19.29■□□□□ 0.68
SQSTM1-208ENST00000485412 IFFO2Q5TF58 517 aa19.29■□□□□ 0.68
SQSTM1-208ENST00000485412 MPRIPQ6WCQ1 1025 aa19.29■□□□□ 0.68
SQSTM1-208ENST00000485412 GPBP1L1Q9HC44 474 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-208ENST00000485412 AK7Q96M32 723 aa19.28■□□□□ 0.68
SQSTM1-208ENST00000485412 KIF24Q5T7B8 1368 aa19.28■□□□□ 0.68
SQSTM1-208ENST00000485412 UBR3Q6ZT12 1888 aa19.28■□□□□ 0.68
SQSTM1-208ENST00000485412 AMIGO3Q86WK7 504 aa19.27■□□□□ 0.68
SQSTM1-208ENST00000485412 PPM1GO15355 546 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-208ENST00000485412 SMIM5Q71RC9 77 aa19.26■□□□□ 0.67
SQSTM1-208ENST00000485412 SMARCC1Q92922 1105 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-208ENST00000485412 CEP350Q5VT06 3117 aa19.25■□□□□ 0.67
SQSTM1-208ENST00000485412 CDCA8Q53HL2 280 aa19.25■□□□□ 0.67
SQSTM1-208ENST00000485412 ZNF526Q8TF50 670 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-208ENST00000485412 PHF14O94880 888 aa19.24■□□□□ 0.67
SQSTM1-208ENST00000485412 IGSF1Q8N6C5 1336 aa19.23■□□□□ 0.67
SQSTM1-208ENST00000485412 ADCY9O60503 1353 aa19.22■□□□□ 0.67
SQSTM1-208ENST00000485412 WWC3Q9ULE0 1092 aa19.22■□□□□ 0.67
SQSTM1-208ENST00000485412 PIGBQ92521 554 aa19.21■□□□□ 0.67
SQSTM1-208ENST00000485412 EYA1Q99502 592 aa19.21■□□□□ 0.67
SQSTM1-208ENST00000485412 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-208ENST00000485412 HSPA6P17066 643 aa19.2■□□□□ 0.66
SQSTM1-208ENST00000485412 POLR3GLQ9BT43 218 aa19.2■□□□□ 0.66
SQSTM1-208ENST00000485412 POLKQ9UBT6 870 aa19.2■□□□□ 0.66
SQSTM1-208ENST00000485412 WASHC2AQ641Q2 1341 aa19.2■□□□□ 0.66
SQSTM1-208ENST00000485412 TNNT2P45379 298 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-208ENST00000485412 SSFA2P28290 1259 aa19.18■□□□□ 0.66
SQSTM1-208ENST00000485412 SPG7Q9UQ90 795 aa19.18■□□□□ 0.66
SQSTM1-208ENST00000485412 NKX1-1Q15270 411 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-208ENST00000485412 PCGF6Q9BYE7 350 aa19.17■□□□□ 0.66
SQSTM1-208ENST00000485412 LOC102724428A0A0B4J2F2 783 aa19.16■□□□□ 0.66
SQSTM1-208ENST00000485412 SIK1P57059 783 aa19.16■□□□□ 0.66
SQSTM1-208ENST00000485412 EIF4A2Q14240 407 aaKnown RBP19.16■□□□□ 0.66
SQSTM1-208ENST00000485412 LINC00116Q8NCU8 138 aa19.16■□□□□ 0.66
SQSTM1-208ENST00000485412 TMOD3Q9NYL9 352 aa19.15■□□□□ 0.66
SQSTM1-208ENST00000485412 ASAP1Q9ULH1 1129 aa19.15■□□□□ 0.66
SQSTM1-208ENST00000485412 GNPATO15228 680 aa19.14■□□□□ 0.65
SQSTM1-208ENST00000485412 PHKG2P15735 406 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms