RNA–Protein interactions for RNA: ENST00000484309.5

MSH5-216, Transcript of mutS homolog 5, humanhuman

TSL 5

Gene MSH5, Length 857 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-216ENST00000484309 BCL11BQ9C0K0 894 aaPredicted RBP16.84■□□□□ 0.29
MSH5-216ENST00000484309 PARD3Q8TEW0 1356 aa16.84■□□□□ 0.29
MSH5-216ENST00000484309 PKD1L3Q7Z443 1732 aa16.84■□□□□ 0.29
MSH5-216ENST00000484309 R3HDM1Q15032 1099 aaKnown RBP16.83■□□□□ 0.28
MSH5-216ENST00000484309 WASHC2AQ641Q2 1341 aa16.83■□□□□ 0.28
MSH5-216ENST00000484309 MORC1Q86VD1 984 aa16.83■□□□□ 0.28
MSH5-216ENST00000484309 TATP17735 454 aaPredicted RBP16.81■□□□□ 0.28
MSH5-216ENST00000484309 ZCRB1Q8TBF4 217 aaKnown RBP16.81■□□□□ 0.28
MSH5-216ENST00000484309 RAPGEF4Q8WZA2 1011 aa16.81■□□□□ 0.28
MSH5-216ENST00000484309 CNGB1Q14028 1251 aaPredicted RBP16.8■□□□□ 0.28
MSH5-216ENST00000484309 ITGB4P16144 1822 aa16.8■□□□□ 0.28
MSH5-216ENST00000484309 TOGARAM1Q9Y4F4 1720 aa16.79■□□□□ 0.28
MSH5-216ENST00000484309 AMER1Q5JTC6 1135 aaPredicted RBP16.79■□□□□ 0.28
MSH5-216ENST00000484309 PLSCR1O15162 318 aa16.78■□□□□ 0.28
MSH5-216ENST00000484309 EIF4A2Q14240 407 aaKnown RBP16.78■□□□□ 0.28
MSH5-216ENST00000484309 EYA1Q99502 592 aa16.78■□□□□ 0.28
MSH5-216ENST00000484309 NCAPD2Q15021 1401 aa16.78■□□□□ 0.28
MSH5-216ENST00000484309 LRP5O75197 1615 aa16.78■□□□□ 0.28
MSH5-216ENST00000484309 CC2D1BQ5T0F9 858 aaKnown RBP16.77■□□□□ 0.28
MSH5-216ENST00000484309 SYTL4Q96C24 671 aaPredicted RBP16.77■□□□□ 0.28
MSH5-216ENST00000484309 PER1O15534 1290 aaPredicted RBP16.76■□□□□ 0.27
MSH5-216ENST00000484309 PROM2Q8N271 834 aa16.76■□□□□ 0.27
MSH5-216ENST00000484309 LY75O60449 1722 aa16.76■□□□□ 0.27
MSH5-216ENST00000484309 TXNRD1Q16881 649 aa16.75■□□□□ 0.27
MSH5-216ENST00000484309 NBPF14Q5TI25 921 aa16.75■□□□□ 0.27
MSH5-216ENST00000484309 PCDH11XQ9BZA7 1347 aa16.74■□□□□ 0.27
MSH5-216ENST00000484309 PCDH11YQ9BZA8 1340 aa16.74■□□□□ 0.27
MSH5-216ENST00000484309 ANO8Q9HCE9 1232 aaPredicted RBP16.74■□□□□ 0.27
MSH5-216ENST00000484309 PRIM1P49642 420 aaKnown RBP16.73■□□□□ 0.27
MSH5-216ENST00000484309 CASZ1Q86V15 1759 aa16.73■□□□□ 0.27
MSH5-216ENST00000484309 PAPPAQ13219 1627 aa16.73■□□□□ 0.27
MSH5-216ENST00000484309 CYP27B1O15528 508 aa16.72■□□□□ 0.27
MSH5-216ENST00000484309 TUBGCP6Q96RT7 1819 aa16.72■□□□□ 0.27
MSH5-216ENST00000484309 IGSF1Q8N6C5 1336 aa16.71■□□□□ 0.27
MSH5-216ENST00000484309 VIRMAQ69YN4 1812 aaKnown RBP16.71■□□□□ 0.27
MSH5-216ENST00000484309 MTHFSP49914 203 aa16.69■□□□□ 0.26
MSH5-216ENST00000484309 AEBP1Q8IUX7 1158 aa16.69■□□□□ 0.26
MSH5-216ENST00000484309 SPG7Q9UQ90 795 aa16.69■□□□□ 0.26
MSH5-216ENST00000484309 TAF1LQ8IZX4 1826 aa16.68■□□□□ 0.26
MSH5-216ENST00000484309 KCNQ4P56696 695 aa16.68■□□□□ 0.26
MSH5-216ENST00000484309 C5P01031 1676 aa16.67■□□□□ 0.26
MSH5-216ENST00000484309 LRRC4BQ9NT99 713 aa16.67■□□□□ 0.26
MSH5-216ENST00000484309 STK32BQ9NY57 414 aa16.67■□□□□ 0.26
MSH5-216ENST00000484309 NPC1L1Q9UHC9 1359 aa16.66■□□□□ 0.26
MSH5-216ENST00000484309 IL13P35225 146 aa16.66■□□□□ 0.26
MSH5-216ENST00000484309 MPRIPQ6WCQ1 1025 aa16.66■□□□□ 0.26
MSH5-216ENST00000484309 PDGFDQ9GZP0 370 aaPredicted RBP16.66■□□□□ 0.26
MSH5-216ENST00000484309 SRCAPQ6ZRS2 3230 aa16.66■□□□□ 0.26
MSH5-216ENST00000484309 QSER1Q2KHR3 1735 aa16.65■□□□□ 0.26
MSH5-216ENST00000484309 SLC15A2Q16348 729 aa16.65■□□□□ 0.26
MSH5-216ENST00000484309 SULT6B1Q6IMI4 303 aa16.65■□□□□ 0.26
MSH5-216ENST00000484309 PHKG2P15735 406 aa16.64■□□□□ 0.25
MSH5-216ENST00000484309 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.64■□□□□ 0.253e-9■■□□□ 13
MSH5-216ENST00000484309 COL3A1P02461 1466 aaPredicted RBP16.64■□□□□ 0.25
MSH5-216ENST00000484309 ZNF827Q17R98 1081 aa16.63■□□□□ 0.25
MSH5-216ENST00000484309 IFNL2Q8IZJ0 200 aa16.63■□□□□ 0.25
MSH5-216ENST00000484309 SCN11AQ9UI33 1791 aa16.63■□□□□ 0.25
MSH5-216ENST00000484309 HMOX1P09601 288 aa16.62■□□□□ 0.25
MSH5-216ENST00000484309 NKX1-1Q15270 411 aaPredicted RBP16.62■□□□□ 0.25
MSH5-216ENST00000484309 ZNF530Q6P9A1 599 aaPredicted RBP16.62■□□□□ 0.25
MSH5-216ENST00000484309 CCNL1Q9UK58 526 aaPredicted RBP16.62■□□□□ 0.25
MSH5-216ENST00000484309 KDRP35968 1356 aa16.62■□□□□ 0.25
MSH5-216ENST00000484309 PLEKHO1Q53GL0 409 aaPredicted RBP16.61■□□□□ 0.25
MSH5-216ENST00000484309 SLC27A3Q5K4L6 730 aa16.61■□□□□ 0.25
MSH5-216ENST00000484309 PALLDQ8WX93 1383 aa16.61■□□□□ 0.25
MSH5-216ENST00000484309 DIAPH1O60610 1272 aaKnown RBP16.6■□□□□ 0.25
MSH5-216ENST00000484309 ZBTB7AO95365 584 aa16.6■□□□□ 0.25
MSH5-216ENST00000484309 PIGBQ92521 554 aa16.6■□□□□ 0.25
MSH5-216ENST00000484309 TMOD3Q9NYL9 352 aa16.59■□□□□ 0.25
MSH5-216ENST00000484309 PLEKHG2Q9H7P9 1386 aa16.59■□□□□ 0.25
MSH5-216ENST00000484309 KDM6AO15550 1401 aaPredicted RBP16.59■□□□□ 0.25
MSH5-216ENST00000484309 AKT1S1Q96B36 256 aa16.58■□□□□ 0.24
MSH5-216ENST00000484309 SPON1Q9HCB6 807 aa16.58■□□□□ 0.24
MSH5-216ENST00000484309 C4BP0C0L5 1744 aa16.58■□□□□ 0.24
MSH5-216ENST00000484309 U2SURPO15042 1029 aaKnown RBP16.57■□□□□ 0.24
MSH5-216ENST00000484309 AMOTQ4VCS5 1084 aa16.57■□□□□ 0.24
MSH5-216ENST00000484309 ATF5Q9Y2D1 282 aaPredicted RBP16.57■□□□□ 0.24
MSH5-216ENST00000484309 UBR3Q6ZT12 1888 aa16.56■□□□□ 0.24
MSH5-216ENST00000484309 PPP2R1AP30153 589 aa16.56■□□□□ 0.24
MSH5-216ENST00000484309 C1orf141Q5JVX7 400 aa16.56■□□□□ 0.24
MSH5-216ENST00000484309 SMARCC1Q92922 1105 aaPredicted RBP16.55■□□□□ 0.24
MSH5-216ENST00000484309 TFCP2L1Q9NZI6 479 aa16.55■□□□□ 0.24
MSH5-216ENST00000484309 PPP1R1BQ9UD71 204 aaPredicted RBP16.55■□□□□ 0.24
MSH5-216ENST00000484309 ASAP1Q9ULH1 1129 aa16.55■□□□□ 0.24
MSH5-216ENST00000484309 PNPLA7Q6ZV29 1317 aa16.54■□□□□ 0.24
MSH5-216ENST00000484309 HSP90AB1P08238 724 aaKnown RBP16.54■□□□□ 0.24
MSH5-216ENST00000484309 DCAF5Q96JK2 942 aa16.54■□□□□ 0.24
MSH5-216ENST00000484309 CFAP53Q96M91 514 aa16.53■□□□□ 0.24
MSH5-216ENST00000484309 COL5A3P25940 1745 aaPredicted RBP16.53■□□□□ 0.24
MSH5-216ENST00000484309 COL24A1Q17RW2 1714 aa16.53■□□□□ 0.24
MSH5-216ENST00000484309 ERVV-2B6SEH9 535 aa16.52■□□□□ 0.24
MSH5-216ENST00000484309 CABP4P57796 275 aa16.52■□□□□ 0.24
MSH5-216ENST00000484309 ATG3Q9NT62 314 aa16.52■□□□□ 0.24
MSH5-216ENST00000484309 ADAMTS7Q9UKP4 1686 aa16.51■□□□□ 0.23
MSH5-216ENST00000484309 PTGER2P43116 358 aa16.51■□□□□ 0.23
MSH5-216ENST00000484309 DDX10Q13206 875 aaKnown RBP16.51■□□□□ 0.23
MSH5-216ENST00000484309 MTHFSDQ2M296 383 aaKnown RBP16.51■□□□□ 0.23
MSH5-216ENST00000484309 MTFR1LQ9H019 292 aa16.51■□□□□ 0.23
MSH5-216ENST00000484309 ZNF831Q5JPB2 1677 aa16.5■□□□□ 0.23
MSH5-216ENST00000484309 LOC102724428A0A0B4J2F2 783 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms