RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ACSBG1Q96GR2 724 aa21.2■□□□□ 0.98
HMGA1-206ENST00000478214 NCAPD2Q15021 1401 aa21.2■□□□□ 0.98
HMGA1-206ENST00000478214 KCNQ2O43526 872 aa21.19■□□□□ 0.98
HMGA1-206ENST00000478214 MTHFSP49914 203 aa21.17■□□□□ 0.98
HMGA1-206ENST00000478214 SBF2Q86WG5 1849 aa21.17■□□□□ 0.98
HMGA1-206ENST00000478214 ZEB1P37275 1124 aaPredicted RBP21.16■□□□□ 0.98
HMGA1-206ENST00000478214 PARD3Q8TEW0 1356 aa21.15■□□□□ 0.98
HMGA1-206ENST00000478214 IGSF1Q8N6C5 1336 aa21.15■□□□□ 0.98
HMGA1-206ENST00000478214 PLSCR1O15162 318 aa21.13■□□□□ 0.97
HMGA1-206ENST00000478214 IL13P35225 146 aa21.13■□□□□ 0.97
HMGA1-206ENST00000478214 PCDH11XQ9BZA7 1347 aa21.12■□□□□ 0.97
HMGA1-206ENST00000478214 PCDH11YQ9BZA8 1340 aa21.12■□□□□ 0.97
HMGA1-206ENST00000478214 SHANK3Q9BYB0 1731 aa21.12■□□□□ 0.97
HMGA1-206ENST00000478214 CYP27B1O15528 508 aa21.11■□□□□ 0.97
HMGA1-206ENST00000478214 NHSQ6T4R5 1651 aa21.1■□□□□ 0.97
HMGA1-206ENST00000478214 PRIM1P49642 420 aaKnown RBP21.1■□□□□ 0.97
HMGA1-206ENST00000478214 AEBP1Q8IUX7 1158 aa21.1■□□□□ 0.97
HMGA1-206ENST00000478214 SPG7Q9UQ90 795 aa21.1■□□□□ 0.97
HMGA1-206ENST00000478214 PROM2Q8N271 834 aa21.09■□□□□ 0.97
HMGA1-206ENST00000478214 SYTL4Q96C24 671 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-206ENST00000478214 PSDA5PKW4 1024 aaPredicted RBP21.08■□□□□ 0.97
HMGA1-206ENST00000478214 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.08■□□□□ 0.97
HMGA1-206ENST00000478214 SULT6B1Q6IMI4 303 aa21.07■□□□□ 0.96
HMGA1-206ENST00000478214 DIAPH1O60610 1272 aaKnown RBP21.06■□□□□ 0.96
HMGA1-206ENST00000478214 R3HDM1Q15032 1099 aaKnown RBP21.06■□□□□ 0.96
HMGA1-206ENST00000478214 PKD1L3Q7Z443 1732 aa21.06■□□□□ 0.96
HMGA1-206ENST00000478214 RREB1Q92766 1687 aa21.05■□□□□ 0.96
HMGA1-206ENST00000478214 KAT6BQ8WYB5 2073 aa21.05■□□□□ 0.96
HMGA1-206ENST00000478214 DDX10Q13206 875 aaKnown RBP21.05■□□□□ 0.96
HMGA1-206ENST00000478214 TXNRD1Q16881 649 aa21.05■□□□□ 0.96
HMGA1-206ENST00000478214 PPP2R1AP30153 589 aa21.04■□□□□ 0.96
HMGA1-206ENST00000478214 KDRP35968 1356 aa21.04■□□□□ 0.96
HMGA1-206ENST00000478214 RGPD3A6NKT7 1758 aaPredicted RBP21.03■□□□□ 0.96
HMGA1-206ENST00000478214 RGPD4Q7Z3J3 1758 aa21.03■□□□□ 0.96
HMGA1-206ENST00000478214 COL3A1P02461 1466 aaPredicted RBP21.03■□□□□ 0.96
HMGA1-206ENST00000478214 PLEKHG2Q9H7P9 1386 aa21.03■□□□□ 0.96
HMGA1-206ENST00000478214 PHKG2P15735 406 aa21.03■□□□□ 0.96
HMGA1-206ENST00000478214 NKX1-1Q15270 411 aaPredicted RBP21.03■□□□□ 0.96
HMGA1-206ENST00000478214 PLEKHO1Q53GL0 409 aaPredicted RBP21.03■□□□□ 0.96
HMGA1-206ENST00000478214 NBPF14Q5TI25 921 aa21.03■□□□□ 0.96
HMGA1-206ENST00000478214 NUP188Q5SRE5 1749 aa21.03■□□□□ 0.96
HMGA1-206ENST00000478214 DOT1LQ8TEK3 1739 aa21.03■□□□□ 0.96
HMGA1-206ENST00000478214 BTAF1O14981 1849 aa21.02■□□□□ 0.96
HMGA1-206ENST00000478214 SRCAPQ6ZRS2 3230 aa21.02■□□□□ 0.96
HMGA1-206ENST00000478214 HMOX1P09601 288 aa21.02■□□□□ 0.96
HMGA1-206ENST00000478214 IFNL2Q8IZJ0 200 aa21.02■□□□□ 0.96
HMGA1-206ENST00000478214 AMOTQ4VCS5 1084 aa21■□□□□ 0.95
HMGA1-206ENST00000478214 ANO8Q9HCE9 1232 aaPredicted RBP21■□□□□ 0.95
HMGA1-206ENST00000478214 ZNF530Q6P9A1 599 aaPredicted RBP20.99■□□□□ 0.95
HMGA1-206ENST00000478214 MPRIPQ6WCQ1 1025 aa20.99■□□□□ 0.95
HMGA1-206ENST00000478214 CFAP53Q96M91 514 aa20.99■□□□□ 0.95
HMGA1-206ENST00000478214 U2SURPO15042 1029 aaKnown RBP20.98■□□□□ 0.95
HMGA1-206ENST00000478214 LRRC4BQ9NT99 713 aa20.97■□□□□ 0.95
HMGA1-206ENST00000478214 TOGARAM1Q9Y4F4 1720 aa20.96■□□□□ 0.95
HMGA1-206ENST00000478214 PIGBQ92521 554 aa20.95■□□□□ 0.94
HMGA1-206ENST00000478214 KCNQ4P56696 695 aa20.94■□□□□ 0.94
HMGA1-206ENST00000478214 SLC27A3Q5K4L6 730 aa20.94■□□□□ 0.94
HMGA1-206ENST00000478214 HSP90AB1P08238 724 aaKnown RBP20.93■□□□□ 0.94
HMGA1-206ENST00000478214 C1orf141Q5JVX7 400 aa20.93■□□□□ 0.94
HMGA1-206ENST00000478214 DCAF5Q96JK2 942 aa20.93■□□□□ 0.94
HMGA1-206ENST00000478214 STK32BQ9NY57 414 aa20.93■□□□□ 0.94
HMGA1-206ENST00000478214 TMOD3Q9NYL9 352 aa20.93■□□□□ 0.94
HMGA1-206ENST00000478214 SLC15A2Q16348 729 aa20.92■□□□□ 0.94
HMGA1-206ENST00000478214 KDM6AO15550 1401 aaPredicted RBP20.91■□□□□ 0.94
HMGA1-206ENST00000478214 PALLDQ8WX93 1383 aa20.91■□□□□ 0.94
HMGA1-206ENST00000478214 CCNL1Q9UK58 526 aaPredicted RBP20.91■□□□□ 0.94
HMGA1-206ENST00000478214 NUDCQ9Y266 331 aa20.91■□□□□ 0.94
HMGA1-206ENST00000478214 ERVV-2B6SEH9 535 aa20.9■□□□□ 0.94
HMGA1-206ENST00000478214 RALBP1Q15311 655 aa20.9■□□□□ 0.94
HMGA1-206ENST00000478214 MTHFSDQ2M296 383 aaKnown RBP20.9■□□□□ 0.94
HMGA1-206ENST00000478214 ZNF827Q17R98 1081 aa20.89■□□□□ 0.93
HMGA1-206ENST00000478214 AKAP4Q5JQC9 854 aa20.89■□□□□ 0.93
HMGA1-206ENST00000478214 SMARCC1Q92922 1105 aaPredicted RBP20.89■□□□□ 0.93
HMGA1-206ENST00000478214 ITGB4P16144 1822 aa20.89■□□□□ 0.93
HMGA1-206ENST00000478214 U2AF1L5P0DN76 240 aaPredicted RBP20.88■□□□□ 0.93
HMGA1-206ENST00000478214 U2AF1Q01081 240 aaKnown RBP eCLIP20.88■□□□□ 0.93
HMGA1-206ENST00000478214 PDGFDQ9GZP0 370 aaPredicted RBP20.88■□□□□ 0.93
HMGA1-206ENST00000478214 ASAP1Q9ULH1 1129 aa20.88■□□□□ 0.93
HMGA1-206ENST00000478214 PAPPAQ13219 1627 aa20.88■□□□□ 0.93
HMGA1-206ENST00000478214 AKT1S1Q96B36 256 aa20.87■□□□□ 0.93
HMGA1-206ENST00000478214 RSPH6AQ9H0K4 717 aa20.87■□□□□ 0.93
HMGA1-206ENST00000478214 LY75O60449 1722 aa20.87■□□□□ 0.93
HMGA1-206ENST00000478214 PRKAR2BP31323 418 aa20.86■□□□□ 0.93
HMGA1-206ENST00000478214 CABP4P57796 275 aa20.86■□□□□ 0.93
HMGA1-206ENST00000478214 ATG3Q9NT62 314 aa20.86■□□□□ 0.93
HMGA1-206ENST00000478214 ZNF316A6NFI3 1004 aaPredicted RBP20.85■□□□□ 0.93
HMGA1-206ENST00000478214 LGR6Q9HBX8 967 aa20.85■□□□□ 0.93
HMGA1-206ENST00000478214 PHACTR3Q96KR7 559 aa20.84■□□□□ 0.93
HMGA1-206ENST00000478214 RNMTO43148 476 aaKnown RBP20.83■□□□□ 0.93
HMGA1-206ENST00000478214 NFATC2IPQ8NCF5 419 aa20.83■□□□□ 0.93
HMGA1-206ENST00000478214 LOC102724428A0A0B4J2F2 783 aa20.82■□□□□ 0.92
HMGA1-206ENST00000478214 FCHSD2O94868 740 aa20.82■□□□□ 0.92
HMGA1-206ENST00000478214 SIK1P57059 783 aa20.82■□□□□ 0.92
HMGA1-206ENST00000478214 GAS2L2Q8NHY3 880 aa20.82■□□□□ 0.92
HMGA1-206ENST00000478214 MYBBP1AQ9BQG0 1328 aaKnown RBP20.81■□□□□ 0.92
HMGA1-206ENST00000478214 TFCP2L1Q9NZI6 479 aa20.81■□□□□ 0.92
HMGA1-206ENST00000478214 LRP5O75197 1615 aa20.8■□□□□ 0.92
HMGA1-206ENST00000478214 ZBTB7AO95365 584 aa20.8■□□□□ 0.92
HMGA1-206ENST00000478214 PRKRIP1Q9H875 184 aaPredicted RBP20.79■□□□□ 0.92
HMGA1-206ENST00000478214 SLC52A2Q9HAB3 445 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms