RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	MKRN4P	Q13434	485 aa	Predicted RBP	13.93	□□□□□ -0.18
HDAC6-222	ENST00000478095	EIF4A2	Q14240	407 aa	Known RBP	13.93	□□□□□ -0.18
HDAC6-222	ENST00000478095	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.93	□□□□□ -0.18
HDAC6-222	ENST00000478095	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.91	□□□□□ -0.18
HDAC6-222	ENST00000478095	EYA1	Q99502	592 aa		13.91	□□□□□ -0.18
HDAC6-222	ENST00000478095	MEGF6	O75095	1541 aa		13.9	□□□□□ -0.18
HDAC6-222	ENST00000478095	EXOC5	O00471	708 aa		13.9	□□□□□ -0.18
HDAC6-222	ENST00000478095	LRRC37A3	O60309	1634 aa		13.9	□□□□□ -0.19
HDAC6-222	ENST00000478095	TNS2	Q63HR2	1409 aa		13.9	□□□□□ -0.19
HDAC6-222	ENST00000478095	MARCH10	Q8NA82	808 aa	Predicted RBP	13.89	□□□□□ -0.19
HDAC6-222	ENST00000478095	RAPGEF4	Q8WZA2	1011 aa		13.89	□□□□□ -0.19
HDAC6-222	ENST00000478095	BRWD3	Q6RI45	1802 aa		13.89	□□□□□ -0.19
HDAC6-222	ENST00000478095	PPP2R1A	P30153	589 aa		13.88	□□□□□ -0.19
HDAC6-222	ENST00000478095	FAM208A	Q9UK61	1670 aa	Known RBP	13.88	□□□□□ -0.19
HDAC6-222	ENST00000478095	EP400	Q96L91	3159 aa		13.87	□□□□□ -0.19
HDAC6-222	ENST00000478095	PARP4	Q9UKK3	1724 aa	Known RBP	13.87	□□□□□ -0.19
HDAC6-222	ENST00000478095	TAT	P17735	454 aa	Predicted RBP	13.87	□□□□□ -0.19
HDAC6-222	ENST00000478095	IL13	P35225	146 aa		13.87	□□□□□ -0.19
HDAC6-222	ENST00000478095	FAM196A	Q6ZSG2	479 aa		13.87	□□□□□ -0.19
HDAC6-222	ENST00000478095	DDX54	Q8TDD1	881 aa	Known RBP	13.87	□□□□□ -0.19
HDAC6-222	ENST00000478095	OVOS2	A0A0G2JMS6	1433 aa		13.87	□□□□□ -0.19
HDAC6-222	ENST00000478095	PARD3	Q8TEW0	1356 aa		13.86	□□□□□ -0.19
HDAC6-222	ENST00000478095	MAP2	P11137	1827 aa	Known RBP	13.86	□□□□□ -0.19
HDAC6-222	ENST00000478095	TRIM37	O94972	964 aa		13.86	□□□□□ -0.19
HDAC6-222	ENST00000478095	NCAPD2	Q15021	1401 aa		13.86	□□□□□ -0.19
HDAC6-222	ENST00000478095	IGSF1	Q8N6C5	1336 aa		13.86	□□□□□ -0.19
HDAC6-222	ENST00000478095	WNK3	Q9BYP7	1800 aa		13.85	□□□□□ -0.19
HDAC6-222	ENST00000478095	AEBP1	Q8IUX7	1158 aa		13.85	□□□□□ -0.19
HDAC6-222	ENST00000478095	ZCRB1	Q8TBF4	217 aa	Known RBP	13.85	□□□□□ -0.19
HDAC6-222	ENST00000478095	RGPD2	P0DJD1	1756 aa		13.84	□□□□□ -0.19
HDAC6-222	ENST00000478095	SPDYE2B	A6NHP3	402 aa		13.84	□□□□□ -0.19
HDAC6-222	ENST00000478095	DIAPH1	O60610	1272 aa	Known RBP	13.84	□□□□□ -0.19
HDAC6-222	ENST00000478095	SPDYE6	P0CI01	402 aa		13.84	□□□□□ -0.19
HDAC6-222	ENST00000478095	SF3B2	Q13435	895 aa	Known RBP	13.84	□□□□□ -0.19
HDAC6-222	ENST00000478095	SPDYE2	Q495Y8	402 aa		13.84	□□□□□ -0.19
HDAC6-222	ENST00000478095	AKT1S1	Q96B36	256 aa		13.84	□□□□□ -0.19
HDAC6-222	ENST00000478095	COL3A1	P02461	1466 aa	Predicted RBP	13.83	□□□□□ -0.2
HDAC6-222	ENST00000478095	SULT6B1	Q6IMI4	303 aa		13.83	□□□□□ -0.2
HDAC6-222	ENST00000478095	DEFB132	Q7Z7B7	95 aa		13.83	□□□□□ -0.2
HDAC6-222	ENST00000478095	CFAP53	Q96M91	514 aa		13.83	□□□□□ -0.2
HDAC6-222	ENST00000478095	U2SURP	O15042	1029 aa	Known RBP	13.82	□□□□□ -0.2
HDAC6-222	ENST00000478095	HMOX1	P09601	288 aa		13.82	□□□□□ -0.2
HDAC6-222	ENST00000478095	PTF1A	Q7RTS3	328 aa		13.82	□□□□□ -0.2
HDAC6-222	ENST00000478095	CCDC125	Q86Z20	511 aa		13.82	□□□□□ -0.2
HDAC6-222	ENST00000478095	ACSBG1	Q96GR2	724 aa		13.82	□□□□□ -0.2
HDAC6-222	ENST00000478095	RALBP1	Q15311	655 aa		13.81	□□□□□ -0.2
HDAC6-222	ENST00000478095	PCDH11X	Q9BZA7	1347 aa		13.81	□□□□□ -0.2
HDAC6-222	ENST00000478095	PCDH11Y	Q9BZA8	1340 aa		13.81	□□□□□ -0.2
HDAC6-222	ENST00000478095	CYP27B1	O15528	508 aa		13.8	□□□□□ -0.2
HDAC6-222	ENST00000478095	KCNQ2	O43526	872 aa		13.79	□□□□□ -0.2
HDAC6-222	ENST00000478095	APBA3	O96018	575 aa		13.79	□□□□□ -0.2
HDAC6-222	ENST00000478095	BAG6	P46379	1132 aa		13.79	□□□□□ -0.2
HDAC6-222	ENST00000478095	EN1	Q05925	392 aa	Predicted RBP	13.79	□□□□□ -0.2
HDAC6-222	ENST00000478095	SPG7	Q9UQ90	795 aa		13.79	□□□□□ -0.2
HDAC6-222	ENST00000478095	BCL9	O00512	1426 aa		13.79	□□□□□ -0.2
HDAC6-222	ENST00000478095	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.78	□□□□□ -0.2
HDAC6-222	ENST00000478095	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.78	□□□□□ -0.2
HDAC6-222	ENST00000478095	KDR	P35968	1356 aa		13.78	□□□□□ -0.2
HDAC6-222	ENST00000478095	SYTL4	Q96C24	671 aa	Predicted RBP	13.77	□□□□□ -0.21
HDAC6-222	ENST00000478095	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.77	□□□□□ -0.21
HDAC6-222	ENST00000478095	RGPD1	P0DJD0	1748 aa		13.76	□□□□□ -0.21
HDAC6-222	ENST00000478095	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.76	□□□□□ -0.21
HDAC6-222	ENST00000478095	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
HDAC6-222	ENST00000478095	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.76	□□□□□ -0.21
HDAC6-222	ENST00000478095	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.76	□□□□□ -0.21
HDAC6-222	ENST00000478095	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.76	□□□□□ -0.21	1e-6	■■□□□ 11.9
HDAC6-222	ENST00000478095	NUDC	Q9Y266	331 aa		13.76	□□□□□ -0.21
HDAC6-222	ENST00000478095	PHKG2	P15735	406 aa		13.75	□□□□□ -0.21
HDAC6-222	ENST00000478095	PRIM1	P49642	420 aa	Known RBP	13.75	□□□□□ -0.21
HDAC6-222	ENST00000478095	EZH2	Q15910	746 aa	Known RBP	13.75	□□□□□ -0.21
HDAC6-222	ENST00000478095	SHANK3	Q9BYB0	1731 aa		13.74	□□□□□ -0.21
HDAC6-222	ENST00000478095	AMOT	Q4VCS5	1084 aa		13.74	□□□□□ -0.21
HDAC6-222	ENST00000478095	IFNL2	Q8IZJ0	200 aa		13.74	□□□□□ -0.21
HDAC6-222	ENST00000478095	TNS1	Q9HBL0	1735 aa	Known RBP	13.73	□□□□□ -0.21
HDAC6-222	ENST00000478095	PRKAR2B	P31323	418 aa		13.73	□□□□□ -0.21
HDAC6-222	ENST00000478095	CAMKK2	Q96RR4	588 aa		13.73	□□□□□ -0.21
HDAC6-222	ENST00000478095	PKD1L3	Q7Z443	1732 aa		13.73	□□□□□ -0.21
HDAC6-222	ENST00000478095	PLEKHG2	Q9H7P9	1386 aa		13.72	□□□□□ -0.21
HDAC6-222	ENST00000478095	NKX1-1	Q15270	411 aa	Predicted RBP	13.72	□□□□□ -0.21
HDAC6-222	ENST00000478095	MTHFSD	Q2M296	383 aa	Known RBP	13.72	□□□□□ -0.21
HDAC6-222	ENST00000478095	C1orf141	Q5JVX7	400 aa		13.72	□□□□□ -0.21
HDAC6-222	ENST00000478095	RSPH6A	Q9H0K4	717 aa		13.72	□□□□□ -0.21
HDAC6-222	ENST00000478095	MPRIP	Q6WCQ1	1025 aa		13.71	□□□□□ -0.21
HDAC6-222	ENST00000478095	NHS	Q6T4R5	1651 aa		13.7	□□□□□ -0.22
HDAC6-222	ENST00000478095	ANP32C	O43423	234 aa		13.7	□□□□□ -0.22
HDAC6-222	ENST00000478095	PHACTR3	Q96KR7	559 aa		13.7	□□□□□ -0.22
HDAC6-222	ENST00000478095	PLSCR1	O15162	318 aa		13.69	□□□□□ -0.22
HDAC6-222	ENST00000478095	AKAP4	Q5JQC9	854 aa		13.69	□□□□□ -0.22
HDAC6-222	ENST00000478095	KDM6A	O15550	1401 aa	Predicted RBP	13.69	□□□□□ -0.22
HDAC6-222	ENST00000478095	DOT1L	Q8TEK3	1739 aa		13.69	□□□□□ -0.22
HDAC6-222	ENST00000478095	FCHSD2	O94868	740 aa		13.68	□□□□□ -0.22
HDAC6-222	ENST00000478095	HSP90AB1	P08238	724 aa	Known RBP	13.68	□□□□□ -0.22
HDAC6-222	ENST00000478095	REM2	Q8IYK8	340 aa	Predicted RBP	13.68	□□□□□ -0.22
HDAC6-222	ENST00000478095	PIGB	Q92521	554 aa		13.68	□□□□□ -0.22
HDAC6-222	ENST00000478095	DCAF5	Q96JK2	942 aa		13.68	□□□□□ -0.22
HDAC6-222	ENST00000478095	TXNRD1	Q16881	649 aa		13.67	□□□□□ -0.22
HDAC6-222	ENST00000478095	CCDC184	Q52MB2	194 aa		13.67	□□□□□ -0.22
HDAC6-222	ENST00000478095	PROM2	Q8N271	834 aa		13.67	□□□□□ -0.22
HDAC6-222	ENST00000478095	GAS2L2	Q8NHY3	880 aa		13.67	□□□□□ -0.22
HDAC6-222	ENST00000478095	TMOD3	Q9NYL9	352 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 105 ms