RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 KMT5BQ4FZB7 885 aa16.61■□□□□ 0.25
HDAC1-206ENST00000476391 FUCA2Q9BTY2 467 aa16.61■□□□□ 0.25
HDAC1-206ENST00000476391 HNRNPH2P55795 449 aaKnown RBP16.6■□□□□ 0.25
HDAC1-206ENST00000476391 TCHHQ07283 1943 aa16.6■□□□□ 0.25
HDAC1-206ENST00000476391 MMP14P50281 582 aa16.6■□□□□ 0.25
HDAC1-206ENST00000476391 RAD51AP2Q09MP3 1159 aa16.6■□□□□ 0.25
HDAC1-206ENST00000476391 ZNF428Q96B54 188 aa16.6■□□□□ 0.25
HDAC1-206ENST00000476391 ATAD2Q6PL18 1390 aa16.6■□□□□ 0.25
HDAC1-206ENST00000476391 PIK3R4Q99570 1358 aa16.6■□□□□ 0.25
HDAC1-206ENST00000476391 PLCB2Q00722 1185 aa16.59■□□□□ 0.25
HDAC1-206ENST00000476391 CERS3Q8IU89 383 aa16.59■□□□□ 0.25
HDAC1-206ENST00000476391 C16orf45Q96MC5 204 aaPredicted RBP16.59■□□□□ 0.25
HDAC1-206ENST00000476391 NOL10Q9BSC4 688 aaKnown RBP16.59■□□□□ 0.25
HDAC1-206ENST00000476391 HNRNPMP52272 730 aaKnown RBP eCLIP16.59■□□□□ 0.25
HDAC1-206ENST00000476391 WDR33Q9C0J8 1336 aaKnown RBP16.58■□□□□ 0.25
HDAC1-206ENST00000476391 AP5Z1O43299 807 aa16.58■□□□□ 0.25
HDAC1-206ENST00000476391 MTHFSP49914 203 aa16.58■□□□□ 0.25
HDAC1-206ENST00000476391 RBM6P78332 1123 aaKnown RBP16.58■□□□□ 0.25
HDAC1-206ENST00000476391 NAA30Q147X3 362 aaPredicted RBP16.58■□□□□ 0.25
HDAC1-206ENST00000476391 AEBP1Q8IUX7 1158 aa16.58■□□□□ 0.25
HDAC1-206ENST00000476391 SIRT2Q8IXJ6 389 aa16.58■□□□□ 0.25
HDAC1-206ENST00000476391 USP32Q8NFA0 1604 aa16.58■□□□□ 0.24
HDAC1-206ENST00000476391 TNNT3P45378 269 aaPredicted RBP16.58■□□□□ 0.24
HDAC1-206ENST00000476391 SPC24Q8NBT2 197 aa16.58■□□□□ 0.24
HDAC1-206ENST00000476391 NSD3Q9BZ95 1437 aa16.57■□□□□ 0.24
HDAC1-206ENST00000476391 UBE2HP62256 183 aa16.57■□□□□ 0.24
HDAC1-206ENST00000476391 GDPD2Q9HCC8 539 aa16.57■□□□□ 0.24
HDAC1-206ENST00000476391 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.57■□□□□ 0.24
HDAC1-206ENST00000476391 MAST1Q9Y2H9 1570 aa16.57■□□□□ 0.24
HDAC1-206ENST00000476391 CTR9Q6PD62 1173 aa16.57■□□□□ 0.24
HDAC1-206ENST00000476391 ARHGAP45Q92619 1136 aa16.57■□□□□ 0.24
HDAC1-206ENST00000476391 SMARCA5O60264 1052 aaPredicted RBP16.56■□□□□ 0.24
HDAC1-206ENST00000476391 U2AF1L5P0DN76 240 aaPredicted RBP16.56■□□□□ 0.24
HDAC1-206ENST00000476391 PTGS1P23219 599 aa16.56■□□□□ 0.24
HDAC1-206ENST00000476391 NEK4P51957 841 aa16.56■□□□□ 0.24
HDAC1-206ENST00000476391 U2AF1Q01081 240 aaKnown RBP eCLIP16.56■□□□□ 0.24
HDAC1-206ENST00000476391 IFT57Q9NWB7 429 aa16.56■□□□□ 0.24
HDAC1-206ENST00000476391 MUM1L1Q5H9M0 696 aa16.56■□□□□ 0.24
HDAC1-206ENST00000476391 RNF20Q5VTR2 975 aa16.56■□□□□ 0.24
HDAC1-206ENST00000476391 CD109Q6YHK3 1445 aa16.55■□□□□ 0.24
HDAC1-206ENST00000476391 MAGI1Q96QZ7 1491 aaPredicted RBP16.55■□□□□ 0.24
HDAC1-206ENST00000476391 BMS1Q14692 1282 aaKnown RBP16.55■□□□□ 0.24
HDAC1-206ENST00000476391 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.55■□□□□ 0.241e-8■■□□□ 13.4
HDAC1-206ENST00000476391 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.55■□□□□ 0.24
HDAC1-206ENST00000476391 TRIM35Q9UPQ4 493 aa16.55■□□□□ 0.24
HDAC1-206ENST00000476391 SBNO2Q9Y2G9 1366 aa16.55■□□□□ 0.24
HDAC1-206ENST00000476391 ERC2O15083 957 aa16.55■□□□□ 0.24
HDAC1-206ENST00000476391 TMPOP42166 694 aaKnown RBP16.55■□□□□ 0.24
HDAC1-206ENST00000476391 FBXO38Q6PIJ6 1188 aa16.55■□□□□ 0.24
HDAC1-206ENST00000476391 ERO1AQ96HE7 468 aa16.55■□□□□ 0.24
HDAC1-206ENST00000476391 RASSF4Q9H2L5 321 aa16.55■□□□□ 0.24
HDAC1-206ENST00000476391 PTCH1Q13635 1447 aa16.55■□□□□ 0.24
HDAC1-206ENST00000476391 RPAP1Q9BWH6 1393 aaPredicted RBP16.54■□□□□ 0.24
HDAC1-206ENST00000476391 C1orf115Q9H7X2 142 aa16.54■□□□□ 0.24
HDAC1-206ENST00000476391 TRAPPC8Q9Y2L5 1435 aa16.54■□□□□ 0.24
HDAC1-206ENST00000476391 PLEKHD1A6NEE1 506 aa16.54■□□□□ 0.24
HDAC1-206ENST00000476391 PTPRTO14522 1441 aa16.53■□□□□ 0.24
HDAC1-206ENST00000476391 SDSP20132 328 aa16.53■□□□□ 0.24
HDAC1-206ENST00000476391 CEP135Q66GS9 1140 aa16.53■□□□□ 0.24
HDAC1-206ENST00000476391 TRERF1Q96PN7 1200 aa16.53■□□□□ 0.24
HDAC1-206ENST00000476391 DCTPP1Q9H773 170 aa16.53■□□□□ 0.24
HDAC1-206ENST00000476391 RTL1A6NKG5 1358 aa16.53■□□□□ 0.24
HDAC1-206ENST00000476391 NOP2P46087 812 aaKnown RBP16.53■□□□□ 0.24
HDAC1-206ENST00000476391 RSPH14Q9UHP6 348 aa16.53■□□□□ 0.24
HDAC1-206ENST00000476391 MYO3AQ8NEV4 1616 aa16.52■□□□□ 0.24
HDAC1-206ENST00000476391 BRD2P25440 801 aaKnown RBP16.52■□□□□ 0.24
HDAC1-206ENST00000476391 CCDC186Q7Z3E2 898 aa16.52■□□□□ 0.24
HDAC1-206ENST00000476391 TXLNBQ8N3L3 684 aa16.52■□□□□ 0.24
HDAC1-206ENST00000476391 SPAG9O60271 1321 aaKnown RBP16.52■□□□□ 0.23
HDAC1-206ENST00000476391 U2SURPO15042 1029 aaKnown RBP16.51■□□□□ 0.23
HDAC1-206ENST00000476391 CCDC192P0DO97 292 aa16.51■□□□□ 0.23
HDAC1-206ENST00000476391 TPD52L1Q16890 204 aaPredicted RBP16.51■□□□□ 0.23
HDAC1-206ENST00000476391 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.51■□□□□ 0.23
HDAC1-206ENST00000476391 PLEKHF1Q96S99 279 aa16.51■□□□□ 0.23
HDAC1-206ENST00000476391 ZNF215Q9UL58 517 aaPredicted RBP16.51■□□□□ 0.23
HDAC1-206ENST00000476391 SAMD9LQ8IVG5 1584 aa16.51■□□□□ 0.23
HDAC1-206ENST00000476391 HTATSF1O43719 755 aaKnown RBP16.51■□□□□ 0.23
HDAC1-206ENST00000476391 TEX35Q5T0J7 233 aa16.51■□□□□ 0.23
HDAC1-206ENST00000476391 ST7Q9NRC1 585 aa16.51■□□□□ 0.23
HDAC1-206ENST00000476391 RNF216Q9NWF9 866 aaPredicted RBP16.51■□□□□ 0.23
HDAC1-206ENST00000476391 ZSCAN25Q6NSZ9 544 aa16.5■□□□□ 0.23
HDAC1-206ENST00000476391 FAM200AQ8TCP9 573 aa16.5■□□□□ 0.23
HDAC1-206ENST00000476391 CCDC171Q6TFL3 1326 aa16.5■□□□□ 0.23
HDAC1-206ENST00000476391 ANAPC15P60006 121 aa16.5■□□□□ 0.23
HDAC1-206ENST00000476391 GIMAP6Q6P9H5 292 aa16.5■□□□□ 0.23
HDAC1-206ENST00000476391 SRCIN1Q9C0H9 1055 aa16.5■□□□□ 0.23
HDAC1-206ENST00000476391 ABCA6Q8N139 1617 aa16.5■□□□□ 0.23
HDAC1-206ENST00000476391 SOX12O15370 315 aa16.49■□□□□ 0.23
HDAC1-206ENST00000476391 FOXD4L6Q3SYB3 417 aaPredicted RBP16.49■□□□□ 0.23
HDAC1-206ENST00000476391 FOXD4L3Q6VB84 417 aaPredicted RBP16.49■□□□□ 0.23
HDAC1-206ENST00000476391 RGS12O14924 1447 aa16.49■□□□□ 0.23
HDAC1-206ENST00000476391 ABCC4O15439 1325 aa16.49■□□□□ 0.23
HDAC1-206ENST00000476391 DHX16O60231 1041 aaKnown RBP16.49■□□□□ 0.23
HDAC1-206ENST00000476391 LRMPQ12912 555 aa16.49■□□□□ 0.23
HDAC1-206ENST00000476391 ZNF446Q9NWS9 450 aa16.49■□□□□ 0.23
HDAC1-206ENST00000476391 TRPM2O94759 1503 aa16.48■□□□□ 0.23
HDAC1-206ENST00000476391 RAD50Q92878 1312 aa16.48■□□□□ 0.23
HDAC1-206ENST00000476391 PSEN1P49768 467 aa16.48■□□□□ 0.23
HDAC1-206ENST00000476391 ELF2Q15723 593 aa16.48■□□□□ 0.23
HDAC1-206ENST00000476391 CNPY2Q9Y2B0 182 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms