RNA–Protein interactions for RNA: ENST00000475835.2

LSM2-211, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 5

Gene LSM2, Length 211 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM2-211	ENST00000475835	PUF60	Q9UHX1	559 aa	Known RBP	4.61	□□□□□ -1.67
LSM2-211	ENST00000475835	WWC3	Q9ULE0	1092 aa		4.61	□□□□□ -1.67
LSM2-211	ENST00000475835	THRAP3	Q9Y2W1	955 aa	Known RBP	4.61	□□□□□ -1.67
LSM2-211	ENST00000475835	HECW1	Q76N89	1606 aa		4.61	□□□□□ -1.67
LSM2-211	ENST00000475835	POLR1A	O95602	1720 aa	Predicted RBP	4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	SUPT6H	Q7KZ85	1726 aa	Known RBP	4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	CFAP69	A5D8W1	941 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	TIMM44	O43615	452 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	TPPP	O94811	219 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	CCDC175	P0C221	793 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	IMPDH2	P12268	514 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	KCNA2	P16389	499 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	MSN	P26038	577 aa	Known RBP	4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	ADCY2	Q08462	1091 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	CCDC173	Q0VFZ6	552 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	IRF5	Q13568	498 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	TAF7	Q15545	349 aa	Predicted RBP	4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	AP1AR	Q63HQ0	302 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	LARP1B	Q659C4	914 aa	Known RBP	4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	TTLL5	Q6EMB2	1281 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	TAX1BP1	Q86VP1	789 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	SUGP1	Q8IWZ8	645 aa	Known RBP	4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	EFCAB13	Q8IY85	973 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	PDILT	Q8N807	584 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	SREK1	Q8WXA9	508 aa	Known RBP	4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	PMM1	Q92871	262 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	PRIMPOL	Q96LW4	560 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	KIF2C	Q99661	725 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	RMI1	Q9H9A7	625 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	UPF2	Q9HAU5	1272 aa	Known RBP	4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	IFT122	Q9HBG6	1241 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	TRPV5	Q9NQA5	729 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	NRBP1	Q9UHY1	535 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	PCDHGA4	Q9Y5G9	962 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	TONSL	Q96HA7	1378 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	UHRF1BP1L	A0JNW5	1464 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	CFTR	P13569	1480 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	FGD5	Q6ZNL6	1462 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	PTPN23	Q9H3S7	1636 aa		4.6	□□□□□ -1.67
LSM2-211	ENST00000475835	CCDC194	A0A1B0GVG4	234 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	TRAK2	O60296	914 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	KIN	O60870	393 aa	Known RBP	4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	RWDD2B	P57060	319 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	ICA1	Q05084	483 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	FLII	Q13045	1269 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	DDX10	Q13206	875 aa	Known RBP	4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	C4orf46	Q504U0	113 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	MUM1L1	Q5H9M0	696 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	CCDC18	Q5T9S5	1454 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	SOGA3	Q5TF21	947 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	NFXL1	Q6ZNB6	911 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	PCGF5	Q86SE9	256 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	CCAR1	Q8IX12	1150 aa	Known RBP	4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	RBM12B	Q8IXT5	1001 aa	Known RBP	4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	VPS37A	Q8NEZ2	397 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	RSPH1	Q8WYR4	309 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	AK7	Q96M32	723 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	SLX1A	Q9BQ83	275 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	USP25	Q9UHP3	1055 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	RSPH14	Q9UHP6	348 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	AKAP2	Q9Y2D5	859 aa		4.59	□□□□□ -1.67
LSM2-211	ENST00000475835	LRRIQ1	Q96JM4	1722 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	THOC2	Q8NI27	1593 aa	Known RBP	4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	EHBP1L1	Q8N3D4	1523 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	PTPRG	P23470	1445 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	KIAA1107	Q9UPP5	1409 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	KDR	P35968	1356 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	ERBB4	Q15303	1308 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835		A6NJR5	290 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	XRCC6	P12956	609 aa	Known RBP eCLIP	4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	ADRA2B	P18089	450 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	RPL17	P18621	184 aa	Known RBP	4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	VCAM1	P19320	739 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	ATIC	P31939	592 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	SESN3	P58005	492 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	MKRN3	Q13064	507 aa	Known RBP	4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	BECN1	Q14457	450 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	COL19A1	Q14993	1142 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	PPP2R5A	Q15172	486 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	RABEP1	Q15276	862 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	NOM1	Q5C9Z4	860 aa	Known RBP	4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	CCDC30	Q5VVM6	783 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	MORC1	Q86VD1	984 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	MIGA1	Q8NAN2	632 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	C1orf131	Q8NDD1	294 aa	Known RBP	4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	TDRD7	Q8NHU6	1098 aa	Known RBP	4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	GBP4	Q96PP9	640 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	SH3GL3	Q99963	347 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	RWDD1	Q9H446	243 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	GOPC	Q9HD26	462 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	OGFR	Q9NZT2	677 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	ATP1B4	Q9UN42	357 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	ZNF232	Q9UNY5	417 aa		4.58	□□□□□ -1.68
LSM2-211	ENST00000475835	DNMBP	Q6XZF7	1577 aa		4.57	□□□□□ -1.68
LSM2-211	ENST00000475835	AQR	O60306	1485 aa	Known RBP eCLIP	4.57	□□□□□ -1.68	8e-9	■■□□□ 12.2
LSM2-211	ENST00000475835	CARMIL1	Q5VZK9	1371 aa		4.57	□□□□□ -1.68
LSM2-211	ENST00000475835	CDKL5	O76039	1030 aa		4.57	□□□□□ -1.68
LSM2-211	ENST00000475835	TRIM37	O94972	964 aa		4.57	□□□□□ -1.68
LSM2-211	ENST00000475835	BAG4	O95429	457 aa	Known RBP	4.57	□□□□□ -1.68
LSM2-211	ENST00000475835	ATP2B1	P20020	1258 aa		4.57	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms