RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 ADH1AP07327 375 aa12.14□□□□□ -0.47
SCN9A-206ENST00000472119 ZNF784Q8NCA9 323 aaPredicted RBP12.14□□□□□ -0.47
SCN9A-206ENST00000472119 FKBPLQ9UIM3 349 aa12.14□□□□□ -0.47
SCN9A-206ENST00000472119 IGF1RP08069 1367 aa12.14□□□□□ -0.47
SCN9A-206ENST00000472119 CTDSPL2Q05D32 466 aa12.13□□□□□ -0.47
SCN9A-206ENST00000472119 RHOQP17081 205 aa12.12□□□□□ -0.47
SCN9A-206ENST00000472119 PRICKLE2Q7Z3G6 844 aa12.12□□□□□ -0.47
SCN9A-206ENST00000472119 ZNF837Q96EG3 531 aaPredicted RBP12.12□□□□□ -0.47
SCN9A-206ENST00000472119 BAZ1BQ9UIG0 1483 aaKnown RBP12.12□□□□□ -0.47
SCN9A-206ENST00000472119 PEG3Q9GZU2 1588 aa12.12□□□□□ -0.47
SCN9A-206ENST00000472119 WIZO95785 1651 aa12.11□□□□□ -0.47
SCN9A-206ENST00000472119 BCRP11274 1271 aa12.11□□□□□ -0.47
SCN9A-206ENST00000472119 FOXR1Q6PIV2 292 aa12.11□□□□□ -0.47
SCN9A-206ENST00000472119 PTGIRP43119 386 aa12.1□□□□□ -0.47
SCN9A-206ENST00000472119 CLK2P49760 499 aaKnown RBP12.1□□□□□ -0.47
SCN9A-206ENST00000472119 VSIG10Q8N0Z9 540 aa12.1□□□□□ -0.47
SCN9A-206ENST00000472119 K7ELQ4 463 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-206ENST00000472119 ADD1P35611 737 aaKnown RBP12.09□□□□□ -0.47
SCN9A-206ENST00000472119 HMGXB3Q12766 1538 aa12.08□□□□□ -0.48
SCN9A-206ENST00000472119 NBPF20Q3BBV1 942 aa12.08□□□□□ -0.48
SCN9A-206ENST00000472119 RIPOR1Q6ZS17 1223 aa12.08□□□□□ -0.48
SCN9A-206ENST00000472119 LRRN4Q8WUT4 740 aa12.08□□□□□ -0.48
SCN9A-206ENST00000472119 PTK2Q05397 1052 aa12.07□□□□□ -0.48
SCN9A-206ENST00000472119 TRIM22Q8IYM9 498 aa12.07□□□□□ -0.48
SCN9A-206ENST00000472119 ADAM32Q8TC27 787 aa12.07□□□□□ -0.48
SCN9A-206ENST00000472119 LILRA1O75019 489 aa12.06□□□□□ -0.48
SCN9A-206ENST00000472119 KDF1Q8NAX2 398 aaPredicted RBP12.06□□□□□ -0.48
SCN9A-206ENST00000472119 ACDQ96AP0 544 aa12.06□□□□□ -0.48
SCN9A-206ENST00000472119 GMCL1Q96IK5 515 aa12.06□□□□□ -0.48
SCN9A-206ENST00000472119 AK7Q96M32 723 aa12.06□□□□□ -0.48
SCN9A-206ENST00000472119 OCSTAMPQ9BR26 566 aa12.06□□□□□ -0.48
SCN9A-206ENST00000472119 ERVH48-1M5A8F1 160 aa12.05□□□□□ -0.48
SCN9A-206ENST00000472119 NR6A1Q15406 480 aa12.05□□□□□ -0.48
SCN9A-206ENST00000472119 POLR3EQ9NVU0 708 aa12.05□□□□□ -0.48
SCN9A-206ENST00000472119 ZC3H4Q9UPT8 1303 aaKnown RBP12.05□□□□□ -0.48
SCN9A-206ENST00000472119 SUPT5HO00267 1087 aaKnown RBP12.04□□□□□ -0.48
SCN9A-206ENST00000472119 DBN1Q16643 649 aa12.04□□□□□ -0.48
SCN9A-206ENST00000472119 KRTAP4-8Q9BYQ9 185 aa12.04□□□□□ -0.48
SCN9A-206ENST00000472119 GTPBP3Q969Y2 492 aaKnown RBP12.03□□□□□ -0.48
SCN9A-206ENST00000472119 BAG6P46379 1132 aa12.01□□□□□ -0.49
SCN9A-206ENST00000472119 RNF144AP50876 292 aaPredicted RBP12.01□□□□□ -0.49
SCN9A-206ENST00000472119 Q8N3U1 123 aa12.01□□□□□ -0.49
SCN9A-206ENST00000472119 TRERF1Q96PN7 1200 aa12.01□□□□□ -0.49
SCN9A-206ENST00000472119 CYLDQ9NQC7 956 aa12□□□□□ -0.49
SCN9A-206ENST00000472119 GPSM3Q9Y4H4 160 aa12□□□□□ -0.49
SCN9A-206ENST00000472119 MX2P20592 715 aa11.99□□□□□ -0.49
SCN9A-206ENST00000472119 PDE4DQ08499 809 aa11.99□□□□□ -0.49
SCN9A-206ENST00000472119 DZIP3Q86Y13 1208 aaKnown RBP11.99□□□□□ -0.49
SCN9A-206ENST00000472119 GAS2L1Q99501 681 aaPredicted RBP11.99□□□□□ -0.49
SCN9A-206ENST00000472119 H7C1W4 665 aa11.98□□□□□ -0.49
SCN9A-206ENST00000472119 RSPH6AQ9H0K4 717 aa11.97□□□□□ -0.49
SCN9A-206ENST00000472119 NSFL1CQ9UNZ2 370 aaKnown RBP11.97□□□□□ -0.49
SCN9A-206ENST00000472119 TOP2AP11388 1531 aaKnown RBP11.96□□□□□ -0.49
SCN9A-206ENST00000472119 KRBA1A5PL33 1030 aa11.96□□□□□ -0.49
SCN9A-206ENST00000472119 MEN1O00255 615 aa11.96□□□□□ -0.49
SCN9A-206ENST00000472119 FURINP09958 794 aa11.96□□□□□ -0.49
SCN9A-206ENST00000472119 SNRPNP63162 240 aaKnown RBP11.96□□□□□ -0.49
SCN9A-206ENST00000472119 LRRC4BQ9NT99 713 aa11.96□□□□□ -0.49
SCN9A-206ENST00000472119 OIP5O43482 229 aa11.95□□□□□ -0.5
SCN9A-206ENST00000472119 DYRK1BQ9Y463 629 aa11.95□□□□□ -0.5
SCN9A-206ENST00000472119 ATP5J2-PTCD1G3V325 749 aa11.94□□□□□ -0.5
SCN9A-206ENST00000472119 PSMG3-AS1Q96PY0 264 aa11.94□□□□□ -0.5
SCN9A-206ENST00000472119 POU4F2Q12837 409 aa11.93□□□□□ -0.5
SCN9A-206ENST00000472119 ESPNB1AK53 854 aa11.92□□□□□ -0.5
SCN9A-206ENST00000472119 GPC1P35052 558 aa11.91□□□□□ -0.5
SCN9A-206ENST00000472119 SLC27A3Q5K4L6 730 aa11.91□□□□□ -0.5
SCN9A-206ENST00000472119 OXCT2Q9BYC2 517 aaPredicted RBP11.91□□□□□ -0.5
SCN9A-206ENST00000472119 MKL2Q9ULH7 1088 aa11.91□□□□□ -0.5
SCN9A-206ENST00000472119 PPP2R2DQ66LE6 453 aa11.9□□□□□ -0.5
SCN9A-206ENST00000472119 TRIM52Q96A61 297 aa11.9□□□□□ -0.5
SCN9A-206ENST00000472119 RRAGCQ9HB90 399 aa11.9□□□□□ -0.5
SCN9A-206ENST00000472119 NESP48681 1621 aa11.89□□□□□ -0.51
SCN9A-206ENST00000472119 PNMA1Q8ND90 353 aa11.89□□□□□ -0.51
SCN9A-206ENST00000472119 EPS8L1Q8TE68 723 aa11.89□□□□□ -0.51
SCN9A-206ENST00000472119 NUCKS1Q9H1E3 243 aaKnown RBP11.89□□□□□ -0.51
SCN9A-206ENST00000472119 ATP1B4Q9UN42 357 aaPredicted RBP11.89□□□□□ -0.51
SCN9A-206ENST00000472119 A0A1W2PRU2 124 aa11.88□□□□□ -0.51
SCN9A-206ENST00000472119 SHISA8B8ZZ34 492 aa11.88□□□□□ -0.51
SCN9A-206ENST00000472119 MAP2K3P46734 347 aa11.88□□□□□ -0.51
SCN9A-206ENST00000472119 CCDC88BA6NC98 1476 aa11.88□□□□□ -0.51
SCN9A-206ENST00000472119 AP1G2O75843 785 aa11.87□□□□□ -0.51
SCN9A-206ENST00000472119 COL8A1P27658 744 aa11.87□□□□□ -0.51
SCN9A-206ENST00000472119 FBXO31Q5XUX0 539 aaPredicted RBP11.87□□□□□ -0.51
SCN9A-206ENST00000472119 SEPT12Q8IYM1 358 aa11.87□□□□□ -0.51
SCN9A-206ENST00000472119 ALYREFQ86V81 257 aaKnown RBP11.86□□□□□ -0.51
SCN9A-206ENST00000472119 NLRP3Q96P20 1036 aa11.86□□□□□ -0.51
SCN9A-206ENST00000472119 CADPSQ9ULU8 1353 aa11.86□□□□□ -0.51
SCN9A-206ENST00000472119 GRIN2CQ14957 1233 aa11.85□□□□□ -0.51
SCN9A-206ENST00000472119 NBPF10Q6P3W6 841 aaKnown RBP11.85□□□□□ -0.51
SCN9A-206ENST00000472119 NBPF15Q8N660 670 aa11.85□□□□□ -0.51
SCN9A-206ENST00000472119 TIMMDC1Q9NPL8 285 aa11.84□□□□□ -0.51
SCN9A-206ENST00000472119 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.83□□□□□ -0.52
SCN9A-206ENST00000472119 C1orf229Q6ZS94 237 aaPredicted RBP11.82□□□□□ -0.52
SCN9A-206ENST00000472119 KRTAP9-2Q9BYQ4 174 aa11.82□□□□□ -0.52
SCN9A-206ENST00000472119 HMX1Q9NP08 348 aaPredicted RBP11.82□□□□□ -0.52
SCN9A-206ENST00000472119 F11P03951 625 aa11.81□□□□□ -0.52
SCN9A-206ENST00000472119 KLRG1Q96E93 195 aa11.81□□□□□ -0.52
SCN9A-206ENST00000472119 GRIP2Q9C0E4 1043 aa11.81□□□□□ -0.52
SCN9A-206ENST00000472119 LAMC3Q9Y6N6 1575 aa11.8□□□□□ -0.52
SCN9A-206ENST00000472119 GIGYF1O75420 1035 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms