RNA–Protein interactions for RNA: ENST00000471261.2

PPP1R3F-204, Transcript of protein phosphatase 1 regulatory subunit 3F, humanhuman

TSL 3

Gene PPP1R3F, Length 503 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP1R3F-204ENST00000471261 PER1O15534 1290 aaPredicted RBP17.18■□□□□ 0.34
PPP1R3F-204ENST00000471261 EIF4A2Q14240 407 aaKnown RBP17.18■□□□□ 0.34
PPP1R3F-204ENST00000471261 MAP2P11137 1827 aaKnown RBP17.18■□□□□ 0.34
PPP1R3F-204ENST00000471261 EYA1Q99502 592 aa17.17■□□□□ 0.34
PPP1R3F-204ENST00000471261 PLSCR1O15162 318 aa17.16■□□□□ 0.34
PPP1R3F-204ENST00000471261 R3HDM1Q15032 1099 aaKnown RBP17.16■□□□□ 0.34
PPP1R3F-204ENST00000471261 SYTL4Q96C24 671 aaPredicted RBP17.16■□□□□ 0.34
PPP1R3F-204ENST00000471261 SBF2Q86WG5 1849 aa17.15■□□□□ 0.34
PPP1R3F-204ENST00000471261 NBPF14Q5TI25 921 aa17.14■□□□□ 0.33
PPP1R3F-204ENST00000471261 PCDH11XQ9BZA7 1347 aa17.14■□□□□ 0.33
PPP1R3F-204ENST00000471261 PCDH11YQ9BZA8 1340 aa17.14■□□□□ 0.33
PPP1R3F-204ENST00000471261 PRIM1P49642 420 aaKnown RBP17.12■□□□□ 0.33
PPP1R3F-204ENST00000471261 MTHFSP49914 203 aa17.11■□□□□ 0.33
PPP1R3F-204ENST00000471261 SPG7Q9UQ90 795 aa17.11■□□□□ 0.33
PPP1R3F-204ENST00000471261 NCAPD2Q15021 1401 aa17.11■□□□□ 0.33
PPP1R3F-204ENST00000471261 NHSQ6T4R5 1651 aa17.1■□□□□ 0.33
PPP1R3F-204ENST00000471261 TXNRD1Q16881 649 aa17.1■□□□□ 0.33
PPP1R3F-204ENST00000471261 PROM2Q8N271 834 aa17.1■□□□□ 0.33
PPP1R3F-204ENST00000471261 IGSF1Q8N6C5 1336 aa17.1■□□□□ 0.33
PPP1R3F-204ENST00000471261 KAT6BQ8WYB5 2073 aa17.09■□□□□ 0.33
PPP1R3F-204ENST00000471261 CYP27B1O15528 508 aa17.09■□□□□ 0.33
PPP1R3F-204ENST00000471261 NPC1L1Q9UHC9 1359 aa17.09■□□□□ 0.33
PPP1R3F-204ENST00000471261 RREB1Q92766 1687 aa17.09■□□□□ 0.33
PPP1R3F-204ENST00000471261 NUP188Q5SRE5 1749 aa17.08■□□□□ 0.32
PPP1R3F-204ENST00000471261 SHANK3Q9BYB0 1731 aa17.08■□□□□ 0.32
PPP1R3F-204ENST00000471261 IL13P35225 146 aa17.07■□□□□ 0.32
PPP1R3F-204ENST00000471261 AEBP1Q8IUX7 1158 aa17.07■□□□□ 0.32
PPP1R3F-204ENST00000471261 RGPD3A6NKT7 1758 aaPredicted RBP17.07■□□□□ 0.32
PPP1R3F-204ENST00000471261 RGPD4Q7Z3J3 1758 aa17.07■□□□□ 0.32
PPP1R3F-204ENST00000471261 SULT6B1Q6IMI4 303 aa17.06■□□□□ 0.32
PPP1R3F-204ENST00000471261 ANO8Q9HCE9 1232 aaPredicted RBP17.06■□□□□ 0.32
PPP1R3F-204ENST00000471261 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.06■□□□□ 0.32
PPP1R3F-204ENST00000471261 DOT1LQ8TEK3 1739 aa17.05■□□□□ 0.32
PPP1R3F-204ENST00000471261 MPRIPQ6WCQ1 1025 aa17.05■□□□□ 0.32
PPP1R3F-204ENST00000471261 BTAF1O14981 1849 aa17.05■□□□□ 0.32
PPP1R3F-204ENST00000471261 IFNL2Q8IZJ0 200 aa17.04■□□□□ 0.32
PPP1R3F-204ENST00000471261 STK32BQ9NY57 414 aa17.04■□□□□ 0.32
PPP1R3F-204ENST00000471261 DIAPH1O60610 1272 aaKnown RBP17.03■□□□□ 0.32
PPP1R3F-204ENST00000471261 PHKG2P15735 406 aa17.03■□□□□ 0.32
PPP1R3F-204ENST00000471261 PLEKHO1Q53GL0 409 aaPredicted RBP17.03■□□□□ 0.32
PPP1R3F-204ENST00000471261 PKD1L3Q7Z443 1732 aa17.03■□□□□ 0.32
PPP1R3F-204ENST00000471261 HMOX1P09601 288 aa17.01■□□□□ 0.31
PPP1R3F-204ENST00000471261 KCNQ4P56696 695 aa17.01■□□□□ 0.31
PPP1R3F-204ENST00000471261 NKX1-1Q15270 411 aaPredicted RBP17.01■□□□□ 0.31
PPP1R3F-204ENST00000471261 AMOTQ4VCS5 1084 aa17.01■□□□□ 0.31
PPP1R3F-204ENST00000471261 ZNF530Q6P9A1 599 aaPredicted RBP17.01■□□□□ 0.31
PPP1R3F-204ENST00000471261 LRRC4BQ9NT99 713 aa17.01■□□□□ 0.31
PPP1R3F-204ENST00000471261 U2SURPO15042 1029 aaKnown RBP17■□□□□ 0.31
PPP1R3F-204ENST00000471261 SLC27A3Q5K4L6 730 aa17■□□□□ 0.31
PPP1R3F-204ENST00000471261 ZEB1P37275 1124 aaPredicted RBP16.99■□□□□ 0.31
PPP1R3F-204ENST00000471261 SLC15A2Q16348 729 aa16.99■□□□□ 0.31
PPP1R3F-204ENST00000471261 C1orf141Q5JVX7 400 aa16.99■□□□□ 0.31
PPP1R3F-204ENST00000471261 CFAP53Q96M91 514 aa16.99■□□□□ 0.31
PPP1R3F-204ENST00000471261 TMOD3Q9NYL9 352 aa16.99■□□□□ 0.31
PPP1R3F-204ENST00000471261 CCNL1Q9UK58 526 aaPredicted RBP16.99■□□□□ 0.31
PPP1R3F-204ENST00000471261 KDRP35968 1356 aa16.99■□□□□ 0.31
PPP1R3F-204ENST00000471261 PLEKHG2Q9H7P9 1386 aa16.99■□□□□ 0.31
PPP1R3F-204ENST00000471261 PPP2R1AP30153 589 aa16.98■□□□□ 0.31
PPP1R3F-204ENST00000471261 PIGBQ92521 554 aa16.98■□□□□ 0.31
PPP1R3F-204ENST00000471261 HSP90AB1P08238 724 aaKnown RBP16.97■□□□□ 0.31
PPP1R3F-204ENST00000471261 DDX10Q13206 875 aaKnown RBP16.97■□□□□ 0.31
PPP1R3F-204ENST00000471261 PDGFDQ9GZP0 370 aaPredicted RBP16.97■□□□□ 0.31
PPP1R3F-204ENST00000471261 PALLDQ8WX93 1383 aa16.97■□□□□ 0.31
PPP1R3F-204ENST00000471261 ZNF827Q17R98 1081 aa16.96■□□□□ 0.31
PPP1R3F-204ENST00000471261 DCAF5Q96JK2 942 aa16.96■□□□□ 0.31
PPP1R3F-204ENST00000471261 TOGARAM1Q9Y4F4 1720 aa16.96■□□□□ 0.3
PPP1R3F-204ENST00000471261 COL3A1P02461 1466 aaPredicted RBP16.95■□□□□ 0.3
PPP1R3F-204ENST00000471261 SMARCC1Q92922 1105 aaPredicted RBP16.95■□□□□ 0.3
PPP1R3F-204ENST00000471261 ZBTB7AO95365 584 aa16.94■□□□□ 0.3
PPP1R3F-204ENST00000471261 SPON1Q9HCB6 807 aa16.94■□□□□ 0.3
PPP1R3F-204ENST00000471261 TFCP2L1Q9NZI6 479 aa16.94■□□□□ 0.3
PPP1R3F-204ENST00000471261 LRP5O75197 1615 aa16.93■□□□□ 0.3
PPP1R3F-204ENST00000471261 AKT1S1Q96B36 256 aa16.93■□□□□ 0.3
PPP1R3F-204ENST00000471261 ASAP1Q9ULH1 1129 aa16.93■□□□□ 0.3
PPP1R3F-204ENST00000471261 ERVV-2B6SEH9 535 aa16.92■□□□□ 0.3
PPP1R3F-204ENST00000471261 CABP4P57796 275 aa16.92■□□□□ 0.3
PPP1R3F-204ENST00000471261 NUDCQ9Y266 331 aa16.92■□□□□ 0.3
PPP1R3F-204ENST00000471261 PAPPAQ13219 1627 aa16.92■□□□□ 0.3
PPP1R3F-204ENST00000471261 KDM6AO15550 1401 aaPredicted RBP16.91■□□□□ 0.3
PPP1R3F-204ENST00000471261 AKAP4Q5JQC9 854 aa16.91■□□□□ 0.3
PPP1R3F-204ENST00000471261 PPP1R1BQ9UD71 204 aaPredicted RBP16.91■□□□□ 0.3
PPP1R3F-204ENST00000471261 ATF5Q9Y2D1 282 aaPredicted RBP16.91■□□□□ 0.3
PPP1R3F-204ENST00000471261 ITGB4P16144 1822 aa16.91■□□□□ 0.3
PPP1R3F-204ENST00000471261 U2AF1L5P0DN76 240 aaPredicted RBP16.9■□□□□ 0.3
PPP1R3F-204ENST00000471261 U2AF1Q01081 240 aaKnown RBP eCLIP16.9■□□□□ 0.3
PPP1R3F-204ENST00000471261 MTHFSDQ2M296 383 aaKnown RBP16.9■□□□□ 0.3
PPP1R3F-204ENST00000471261 ATG3Q9NT62 314 aa16.9■□□□□ 0.3
PPP1R3F-204ENST00000471261 LY75O60449 1722 aa16.9■□□□□ 0.3
PPP1R3F-204ENST00000471261 LOC102724428A0A0B4J2F2 783 aa16.89■□□□□ 0.29
PPP1R3F-204ENST00000471261 SIK1P57059 783 aa16.89■□□□□ 0.29
PPP1R3F-204ENST00000471261 MSH5O43196 834 aa16.88■□□□□ 0.29
PPP1R3F-204ENST00000471261 NFATC2IPQ8NCF5 419 aa16.88■□□□□ 0.29
PPP1R3F-204ENST00000471261 RBM42Q9BTD8 480 aaKnown RBP16.88■□□□□ 0.29
PPP1R3F-204ENST00000471261 PNPLA7Q6ZV29 1317 aa16.88■□□□□ 0.29
PPP1R3F-204ENST00000471261 CASZ1Q86V15 1759 aa16.87■□□□□ 0.29
PPP1R3F-204ENST00000471261 HMGB2P26583 209 aaKnown RBP16.87■□□□□ 0.29
PPP1R3F-204ENST00000471261 PRKAR2BP31323 418 aa16.87■□□□□ 0.29
PPP1R3F-204ENST00000471261 ATP6V1AP38606 617 aa16.87■□□□□ 0.29
PPP1R3F-204ENST00000471261 AK7Q96M32 723 aa16.87■□□□□ 0.29
PPP1R3F-204ENST00000471261 MTFR1LQ9H019 292 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms