RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CC2D2BQ6DHV5 1058 aa9.45□□□□□ -0.9
CCDC88A-210ENST00000468534 NANOS1Q8WY41 292 aaKnown RBP9.45□□□□□ -0.9
CCDC88A-210ENST00000468534 APBB1O00213 710 aa9.44□□□□□ -0.9
CCDC88A-210ENST00000468534 SCTRP47872 440 aa9.44□□□□□ -0.9
CCDC88A-210ENST00000468534 RNFT1Q5M7Z0 435 aa9.44□□□□□ -0.9
CCDC88A-210ENST00000468534 RNF20Q5VTR2 975 aa9.44□□□□□ -0.9
CCDC88A-210ENST00000468534 SV2AQ7L0J3 742 aa9.44□□□□□ -0.9
CCDC88A-210ENST00000468534 ERVK-9P63128 1117 aa9.43□□□□□ -0.9
CCDC88A-210ENST00000468534 A0A1W2PRU2 124 aa9.42□□□□□ -0.9
CCDC88A-210ENST00000468534 ESF1Q9H501 851 aaKnown RBP9.42□□□□□ -0.9
CCDC88A-210ENST00000468534 RNF144AP50876 292 aaPredicted RBP9.41□□□□□ -0.9
CCDC88A-210ENST00000468534 MCCD1P59942 119 aaPredicted RBP9.41□□□□□ -0.9
CCDC88A-210ENST00000468534 ZNF592Q92610 1267 aa9.41□□□□□ -0.9
CCDC88A-210ENST00000468534 TBC1D2BQ9UPU7 963 aa9.41□□□□□ -0.9
CCDC88A-210ENST00000468534 SOCS7O14512 581 aa9.4□□□□□ -0.9
CCDC88A-210ENST00000468534 SLC27A3Q5K4L6 730 aa9.4□□□□□ -0.9
CCDC88A-210ENST00000468534 CYP2U1Q7Z449 544 aa9.4□□□□□ -0.9
CCDC88A-210ENST00000468534 NLRP3Q96P20 1036 aa9.4□□□□□ -0.9
CCDC88A-210ENST00000468534 CUEDC1Q9NWM3 386 aaPredicted RBP9.4□□□□□ -0.9
CCDC88A-210ENST00000468534 CCDC125Q86Z20 511 aa9.39□□□□□ -0.91
CCDC88A-210ENST00000468534 ARHGEF10LQ9HCE6 1279 aa9.39□□□□□ -0.91
CCDC88A-210ENST00000468534 RIPOR1Q6ZS17 1223 aa9.38□□□□□ -0.91
CCDC88A-210ENST00000468534 OSBPL3Q9H4L5 887 aa9.38□□□□□ -0.91
CCDC88A-210ENST00000468534 RAB6BQ9NRW1 208 aa9.38□□□□□ -0.91
CCDC88A-210ENST00000468534 POU4F2Q12837 409 aa9.37□□□□□ -0.91
CCDC88A-210ENST00000468534 SVOPQ8N4V2 548 aa9.37□□□□□ -0.91
CCDC88A-210ENST00000468534 GPC1P35052 558 aa9.36□□□□□ -0.91
CCDC88A-210ENST00000468534 WHAMMQ8TF30 809 aa9.36□□□□□ -0.91
CCDC88A-210ENST00000468534 GAS2L1Q99501 681 aaPredicted RBP9.36□□□□□ -0.91
CCDC88A-210ENST00000468534 CEP126Q9P2H0 1117 aa9.36□□□□□ -0.91
CCDC88A-210ENST00000468534 CLN3Q13286 438 aa9.35□□□□□ -0.91
CCDC88A-210ENST00000468534 ZNF385CQ66K41 422 aaPredicted RBP9.35□□□□□ -0.91
CCDC88A-210ENST00000468534 CCDC85AQ96PX6 553 aaPredicted RBP9.35□□□□□ -0.91
CCDC88A-210ENST00000468534 CDCA7Q9BWT1 371 aaPredicted RBP9.35□□□□□ -0.91
CCDC88A-210ENST00000468534 PRM3Q9NNZ6 103 aa9.35□□□□□ -0.91
CCDC88A-210ENST00000468534 GPR25O00155 361 aa9.34□□□□□ -0.91
CCDC88A-210ENST00000468534 TRAK2O60296 914 aa9.34□□□□□ -0.91
CCDC88A-210ENST00000468534 MYCP01106 439 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-210ENST00000468534 ZNF837Q96EG3 531 aaPredicted RBP9.33□□□□□ -0.92
CCDC88A-210ENST00000468534 ADAMTS2O95450 1211 aa9.32□□□□□ -0.92
CCDC88A-210ENST00000468534 EIF4G2P78344 907 aaKnown RBP eCLIP9.32□□□□□ -0.92
CCDC88A-210ENST00000468534 VAC14Q08AM6 782 aa9.32□□□□□ -0.92
CCDC88A-210ENST00000468534 IRF5Q13568 498 aa9.32□□□□□ -0.92
CCDC88A-210ENST00000468534 NBPF10Q6P3W6 841 aaKnown RBP9.32□□□□□ -0.92
CCDC88A-210ENST00000468534 NBPF15Q8N660 670 aa9.32□□□□□ -0.92
CCDC88A-210ENST00000468534 GRIP2Q9C0E4 1043 aa9.32□□□□□ -0.92
CCDC88A-210ENST00000468534 ADAMTS8Q9UP79 889 aa9.32□□□□□ -0.92
CCDC88A-210ENST00000468534 SLURP2P0DP57 97 aa9.31□□□□□ -0.92
CCDC88A-210ENST00000468534 PRKCSHP14314 528 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-210ENST00000468534 ABL2P42684 1182 aa9.31□□□□□ -0.92
CCDC88A-210ENST00000468534 GAS6Q14393 721 aa9.31□□□□□ -0.92
CCDC88A-210ENST00000468534 DBN1Q16643 649 aa9.31□□□□□ -0.92
CCDC88A-210ENST00000468534 TSGA10IPQ3SY00 556 aa9.31□□□□□ -0.92
CCDC88A-210ENST00000468534 TRIM22Q8IYM9 498 aa9.31□□□□□ -0.92
CCDC88A-210ENST00000468534 CNKSR1Q969H4 720 aa9.31□□□□□ -0.92
CCDC88A-210ENST00000468534 GDPD2Q9HCC8 539 aa9.31□□□□□ -0.92
CCDC88A-210ENST00000468534 GNRH1P01148 92 aa9.3□□□□□ -0.92
CCDC88A-210ENST00000468534 IL2RAP01589 272 aa9.3□□□□□ -0.92
CCDC88A-210ENST00000468534 TAS1R3Q7RTX0 852 aa9.3□□□□□ -0.92
CCDC88A-210ENST00000468534 TIMMDC1Q9NPL8 285 aa9.3□□□□□ -0.92
CCDC88A-210ENST00000468534 DOLKQ9UPQ8 538 aa9.3□□□□□ -0.92
CCDC88A-210ENST00000468534 DYRK1BQ9Y463 629 aa9.3□□□□□ -0.92
CCDC88A-210ENST00000468534 WASLO00401 505 aaPredicted RBP9.29□□□□□ -0.92
CCDC88A-210ENST00000468534 PHKA2P46019 1235 aa9.29□□□□□ -0.92
CCDC88A-210ENST00000468534 SLFNL1Q499Z3 407 aa9.29□□□□□ -0.92
CCDC88A-210ENST00000468534 FOXR1Q6PIV2 292 aa9.29□□□□□ -0.92
CCDC88A-210ENST00000468534 RNF135Q8IUD6 432 aa9.29□□□□□ -0.92
CCDC88A-210ENST00000468534 GTPBP3Q969Y2 492 aaKnown RBP9.29□□□□□ -0.92
CCDC88A-210ENST00000468534 ESYT1Q9BSJ8 1104 aa9.29□□□□□ -0.92
CCDC88A-210ENST00000468534 STAU1O95793 577 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-210ENST00000468534 CENPCQ03188 943 aa9.28□□□□□ -0.92
CCDC88A-210ENST00000468534 OXLD1Q5BKU9 147 aa9.28□□□□□ -0.92
CCDC88A-210ENST00000468534 LYPD4Q6UWN0 246 aa9.28□□□□□ -0.92
CCDC88A-210ENST00000468534 SPATA31C2B4DYI2 1134 aa9.27□□□□□ -0.93
CCDC88A-210ENST00000468534 H7C1W4 665 aa9.27□□□□□ -0.93
CCDC88A-210ENST00000468534 SRSF11Q05519 484 aaKnown RBP9.27□□□□□ -0.93
CCDC88A-210ENST00000468534 KCNMA1Q12791 1236 aa9.27□□□□□ -0.93
CCDC88A-210ENST00000468534 ZSCAN10Q96SZ4 725 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-210ENST00000468534 GPAMQ9HCL2 828 aa9.27□□□□□ -0.93
CCDC88A-210ENST00000468534 MAP3K10Q02779 954 aa9.26□□□□□ -0.93
CCDC88A-210ENST00000468534 GMCL1Q96IK5 515 aa9.26□□□□□ -0.93
CCDC88A-210ENST00000468534 ARHGEF15O94989 841 aa9.25□□□□□ -0.93
CCDC88A-210ENST00000468534 GTF2E1P29083 439 aaPredicted RBP9.25□□□□□ -0.93
CCDC88A-210ENST00000468534 MARSP56192 900 aaKnown RBP9.25□□□□□ -0.93
CCDC88A-210ENST00000468534 TMEM214Q6NUQ4 689 aaKnown RBP9.25□□□□□ -0.93
CCDC88A-210ENST00000468534 PHTF2Q8N3S3 785 aa9.25□□□□□ -0.93
CCDC88A-210ENST00000468534 TRERF1Q96PN7 1200 aa9.25□□□□□ -0.93
CCDC88A-210ENST00000468534 NUCKS1Q9H1E3 243 aaKnown RBP9.25□□□□□ -0.93
CCDC88A-210ENST00000468534 MBIPQ9NS73 344 aa9.25□□□□□ -0.93
CCDC88A-210ENST00000468534 RNF225M0QZC1 329 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-210ENST00000468534 F11P03951 625 aa9.24□□□□□ -0.93
CCDC88A-210ENST00000468534 GSK3AP49840 483 aa9.24□□□□□ -0.93
CCDC88A-210ENST00000468534 USP4Q13107 963 aa9.24□□□□□ -0.93
CCDC88A-210ENST00000468534 KCTD17Q8N5Z5 321 aa9.24□□□□□ -0.93
CCDC88A-210ENST00000468534 IGF1RP08069 1367 aa9.24□□□□□ -0.93
CCDC88A-210ENST00000468534 CELA2BP08218 269 aaPredicted RBP9.23□□□□□ -0.93
CCDC88A-210ENST00000468534 RASSF7Q02833 373 aa9.23□□□□□ -0.93
CCDC88A-210ENST00000468534 ESCO1Q5FWF5 840 aa9.23□□□□□ -0.93
CCDC88A-210ENST00000468534 WDR44Q5JSH3 913 aa9.23□□□□□ -0.93
CCDC88A-210ENST00000468534 GNASQ5JWF2 1037 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms