RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 RRP7AQ9Y3A4 280 aaKnown RBP9.06□□□□□ -0.96
SCAF4-204ENST00000467731 NEUROD2Q15784 382 aa9.05□□□□□ -0.96
SCAF4-204ENST00000467731 RAPGEF4Q8WZA2 1011 aa9.05□□□□□ -0.96
SCAF4-204ENST00000467731 SPATA31A1Q5TZJ5 1347 aa9.05□□□□□ -0.96
SCAF4-204ENST00000467731 CCDC9Q9Y3X0 531 aaKnown RBP9.05□□□□□ -0.96
SCAF4-204ENST00000467731 EP400Q96L91 3159 aa9.05□□□□□ -0.96
SCAF4-204ENST00000467731 SPATA31A5Q5VU36 1347 aa9.04□□□□□ -0.96
SCAF4-204ENST00000467731 SPATA31A7Q8IWB4 1347 aa9.04□□□□□ -0.96
SCAF4-204ENST00000467731 VPS72Q15906 364 aa9.04□□□□□ -0.96
SCAF4-204ENST00000467731 PKD1L3Q7Z443 1732 aa9.04□□□□□ -0.96
SCAF4-204ENST00000467731 IL2RBP14784 551 aa9.04□□□□□ -0.96
SCAF4-204ENST00000467731 TATP17735 454 aaPredicted RBP9.04□□□□□ -0.96
SCAF4-204ENST00000467731 TMPOP42166 694 aaKnown RBP9.04□□□□□ -0.96
SCAF4-204ENST00000467731 MTHFSDQ2M296 383 aaKnown RBP9.04□□□□□ -0.96
SCAF4-204ENST00000467731 ILDR1Q86SU0 546 aaPredicted RBP9.04□□□□□ -0.96
SCAF4-204ENST00000467731 PODXL2Q9NZ53 605 aa9.04□□□□□ -0.96
SCAF4-204ENST00000467731 VIRMAQ69YN4 1812 aaKnown RBP9.04□□□□□ -0.96
SCAF4-204ENST00000467731 OVOS2A0A0G2JMS6 1433 aa9.03□□□□□ -0.96
SCAF4-204ENST00000467731 NFE2L2Q16236 605 aa9.03□□□□□ -0.96
SCAF4-204ENST00000467731 SHANK3Q9BYB0 1731 aa9.03□□□□□ -0.96
SCAF4-204ENST00000467731 DISP2A7MBM2 1401 aa9.03□□□□□ -0.96
SCAF4-204ENST00000467731 RIPK4P57078 832 aa9.03□□□□□ -0.96
SCAF4-204ENST00000467731 THRAP3Q9Y2W1 955 aaKnown RBP9.03□□□□□ -0.96
SCAF4-204ENST00000467731 GLI3P10071 1580 aa9.02□□□□□ -0.96
SCAF4-204ENST00000467731 ATRNO75882 1429 aa9.02□□□□□ -0.97
SCAF4-204ENST00000467731 AMOTQ4VCS5 1084 aa9.02□□□□□ -0.97
SCAF4-204ENST00000467731 GAS2L2Q8NHY3 880 aa9.02□□□□□ -0.97
SCAF4-204ENST00000467731 TRPC5Q9UL62 973 aaPredicted RBP9.02□□□□□ -0.97
SCAF4-204ENST00000467731 ZBED9Q6R2W3 1325 aa9.02□□□□□ -0.97
SCAF4-204ENST00000467731 PLEKHO1Q53GL0 409 aaPredicted RBP9.02□□□□□ -0.97
SCAF4-204ENST00000467731 PLEKHG2Q9H7P9 1386 aa9.02□□□□□ -0.97
SCAF4-204ENST00000467731 GJD4Q96KN9 370 aaPredicted RBP9.01□□□□□ -0.97
SCAF4-204ENST00000467731 QTRT2Q9H974 415 aaKnown RBP9.01□□□□□ -0.97
SCAF4-204ENST00000467731 KAT6BQ8WYB5 2073 aa9.01□□□□□ -0.97
SCAF4-204ENST00000467731 FAM98CQ17RN3 349 aaKnown RBP9.01□□□□□ -0.97
SCAF4-204ENST00000467731 ZNF530Q6P9A1 599 aaPredicted RBP9.01□□□□□ -0.97
SCAF4-204ENST00000467731 BARGINQ6ZT62 677 aa9.01□□□□□ -0.97
SCAF4-204ENST00000467731 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.01□□□□□ -0.973e-7■■□□□ 13.3
SCAF4-204ENST00000467731 TRIM35Q9UPQ4 493 aa9.01□□□□□ -0.97
SCAF4-204ENST00000467731 LRRC37A3O60309 1634 aa9.01□□□□□ -0.97
SCAF4-204ENST00000467731 WWC1Q8IX03 1113 aa9□□□□□ -0.97
SCAF4-204ENST00000467731 SPG7Q9UQ90 795 aa9□□□□□ -0.97
SCAF4-204ENST00000467731 CCDC27Q2M243 656 aa9□□□□□ -0.97
SCAF4-204ENST00000467731 ZNF772Q68DY9 489 aaPredicted RBP9□□□□□ -0.97
SCAF4-204ENST00000467731 NGEFQ8N5V2 710 aa9□□□□□ -0.97
SCAF4-204ENST00000467731 ZCRB1Q8TBF4 217 aaKnown RBP9□□□□□ -0.97
SCAF4-204ENST00000467731 PHF23Q9BUL5 403 aaPredicted RBP9□□□□□ -0.97
SCAF4-204ENST00000467731 CYP27B1O15528 508 aa9□□□□□ -0.97
SCAF4-204ENST00000467731 DCTN1Q14203 1278 aa9□□□□□ -0.97
SCAF4-204ENST00000467731 ZNF521Q96K83 1311 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 MAP3K5Q99683 1374 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 GNAT3A8MTJ3 354 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 NCBP3Q53F19 620 aaKnown RBP8.99□□□□□ -0.97
SCAF4-204ENST00000467731 C1orf141Q5JVX7 400 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 CDCA7Q9BWT1 371 aaPredicted RBP8.99□□□□□ -0.97
SCAF4-204ENST00000467731 THSD7AQ9UPZ6 1657 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 PCDH11XQ9BZA7 1347 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 PCDH11YQ9BZA8 1340 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 TNS2Q63HR2 1409 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 AKAP4Q5JQC9 854 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 MCM10Q7L590 875 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 THUMPD2Q9BTF0 503 aaKnown RBP8.99□□□□□ -0.97
SCAF4-204ENST00000467731 SCN11AQ9UI33 1791 aa8.99□□□□□ -0.97
SCAF4-204ENST00000467731 A0A0G2JS52 829 aa8.98□□□□□ -0.97
SCAF4-204ENST00000467731 EXOC5O00471 708 aa8.98□□□□□ -0.97
SCAF4-204ENST00000467731 PHKG2P15735 406 aa8.98□□□□□ -0.97
SCAF4-204ENST00000467731 LMOD3Q0VAK6 560 aa8.98□□□□□ -0.97
SCAF4-204ENST00000467731 DDB1Q16531 1140 aa8.98□□□□□ -0.97
SCAF4-204ENST00000467731 IFNL2Q8IZJ0 200 aa8.98□□□□□ -0.97
SCAF4-204ENST00000467731 DDX54Q8TDD1 881 aaKnown RBP8.98□□□□□ -0.97
SCAF4-204ENST00000467731 RTF1Q92541 710 aaKnown RBP8.98□□□□□ -0.97
SCAF4-204ENST00000467731 RGS17Q9UGC6 210 aaPredicted RBP8.98□□□□□ -0.97
SCAF4-204ENST00000467731 MPRIPQ6WCQ1 1025 aa8.97□□□□□ -0.97
SCAF4-204ENST00000467731 ADAMTS7Q9UKP4 1686 aa8.97□□□□□ -0.97
SCAF4-204ENST00000467731 IL17REQ8NFR9 667 aa8.97□□□□□ -0.97
SCAF4-204ENST00000467731 PKNOX2Q96KN3 472 aa8.97□□□□□ -0.97
SCAF4-204ENST00000467731 HTATSF1O43719 755 aaKnown RBP8.97□□□□□ -0.97
SCAF4-204ENST00000467731 CDCA7LQ96GN5 454 aa8.97□□□□□ -0.97
SCAF4-204ENST00000467731 LGR6Q9HBX8 967 aa8.97□□□□□ -0.97
SCAF4-204ENST00000467731 SPINK5Q9NQ38 1064 aaPredicted RBP8.97□□□□□ -0.97
SCAF4-204ENST00000467731 KDM6AO15550 1401 aaPredicted RBP8.97□□□□□ -0.97
SCAF4-204ENST00000467731 ONECUT3O60422 494 aaPredicted RBP8.96□□□□□ -0.97
SCAF4-204ENST00000467731 GOLGA2Q08379 1002 aa8.96□□□□□ -0.97
SCAF4-204ENST00000467731 BRWD3Q6RI45 1802 aa8.96□□□□□ -0.97
SCAF4-204ENST00000467731 TOGARAM1Q9Y4F4 1720 aa8.96□□□□□ -0.98
SCAF4-204ENST00000467731 CEMIPQ8WUJ3 1361 aa8.96□□□□□ -0.98
SCAF4-204ENST00000467731 RBM6P78332 1123 aaKnown RBP8.96□□□□□ -0.98
SCAF4-204ENST00000467731 WDR63Q8IWG1 891 aa8.96□□□□□ -0.98
SCAF4-204ENST00000467731 RNMTO43148 476 aaKnown RBP8.95□□□□□ -0.98
SCAF4-204ENST00000467731 DCAF5Q96JK2 942 aa8.95□□□□□ -0.98
SCAF4-204ENST00000467731 SIPA1L3O60292 1781 aaPredicted RBP8.95□□□□□ -0.98
SCAF4-204ENST00000467731 HSP90AB1P08238 724 aaKnown RBP8.95□□□□□ -0.98
SCAF4-204ENST00000467731 POTEAQ6S8J7 498 aa8.95□□□□□ -0.98
SCAF4-204ENST00000467731 SEPT12Q8IYM1 358 aa8.95□□□□□ -0.98
SCAF4-204ENST00000467731 ITGB4P16144 1822 aa8.95□□□□□ -0.98
SCAF4-204ENST00000467731 PDE3BQ13370 1112 aa8.94□□□□□ -0.98
SCAF4-204ENST00000467731 NKX1-1Q15270 411 aaPredicted RBP8.94□□□□□ -0.98
SCAF4-204ENST00000467731 MARCH10Q8NA82 808 aaPredicted RBP8.94□□□□□ -0.98
SCAF4-204ENST00000467731 RXRBP28702 533 aa8.94□□□□□ -0.98
SCAF4-204ENST00000467731 CALD1Q05682 793 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms