RNA–Protein interactions for RNA: ENST00000465282.5

USP39-211, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-211ENST00000465282 FAM196AQ6ZSG2 479 aa22.73■■□□□ 1.23
USP39-211ENST00000465282 ZCRB1Q8TBF4 217 aaKnown RBP22.73■■□□□ 1.23
USP39-211ENST00000465282 PKD1L3Q7Z443 1732 aa22.72■■□□□ 1.23
USP39-211ENST00000465282 ANP32CO43423 234 aa22.72■■□□□ 1.23
USP39-211ENST00000465282 SULT6B1Q6IMI4 303 aa22.71■■□□□ 1.23
USP39-211ENST00000465282 BCL9O00512 1426 aa22.71■■□□□ 1.23
USP39-211ENST00000465282 SHANK3Q9BYB0 1731 aa22.7■■□□□ 1.22
USP39-211ENST00000465282 CCDC125Q86Z20 511 aa22.69■■□□□ 1.22
USP39-211ENST00000465282 SPG7Q9UQ90 795 aa22.69■■□□□ 1.22
USP39-211ENST00000465282 U2SURPO15042 1029 aaKnown RBP22.68■■□□□ 1.22
USP39-211ENST00000465282 MARCH10Q8NA82 808 aaPredicted RBP22.68■■□□□ 1.22
USP39-211ENST00000465282 PCDH11XQ9BZA7 1347 aa22.67■■□□□ 1.22
USP39-211ENST00000465282 PCDH11YQ9BZA8 1340 aa22.67■■□□□ 1.22
USP39-211ENST00000465282 AMOTQ4VCS5 1084 aa22.67■■□□□ 1.22
USP39-211ENST00000465282 SBF2Q86WG5 1849 aa22.66■■□□□ 1.22
USP39-211ENST00000465282 AEBP1Q8IUX7 1158 aa22.66■■□□□ 1.22
USP39-211ENST00000465282 PLEKHO1Q53GL0 409 aaPredicted RBP22.65■■□□□ 1.22
USP39-211ENST00000465282 DDX54Q8TDD1 881 aaKnown RBP22.65■■□□□ 1.22
USP39-211ENST00000465282 FAM182BQ5T319 152 aa22.64■■□□□ 1.21
USP39-211ENST00000465282 FCHSD2O94868 740 aa22.63■■□□□ 1.21
USP39-211ENST00000465282 HMOX1P09601 288 aa22.63■■□□□ 1.21
USP39-211ENST00000465282 U2AF1L5P0DN76 240 aaPredicted RBP22.63■■□□□ 1.21
USP39-211ENST00000465282 U2AF1Q01081 240 aaKnown RBP eCLIP22.63■■□□□ 1.21
USP39-211ENST00000465282 UPF1Q92900 1129 aaKnown RBP eCLIP22.63■■□□□ 1.21
USP39-211ENST00000465282 KAT6BQ8WYB5 2073 aa22.62■■□□□ 1.21
USP39-211ENST00000465282 PNNQ9H307 717 aaKnown RBP22.61■■□□□ 1.21
USP39-211ENST00000465282 IFNL2Q8IZJ0 200 aa22.6■■□□□ 1.21
USP39-211ENST00000465282 CYP27B1O15528 508 aa22.59■■□□□ 1.21
USP39-211ENST00000465282 NKX1-1Q15270 411 aaPredicted RBP22.59■■□□□ 1.21
USP39-211ENST00000465282 RSPH6AQ9H0K4 717 aa22.59■■□□□ 1.21
USP39-211ENST00000465282 HSP90AB1P08238 724 aaKnown RBP22.58■■□□□ 1.21
USP39-211ENST00000465282 SF3B2Q13435 895 aaKnown RBP22.58■■□□□ 1.21
USP39-211ENST00000465282 NHSQ6T4R5 1651 aa22.58■■□□□ 1.2
USP39-211ENST00000465282 TNS1Q9HBL0 1735 aaKnown RBP22.57■■□□□ 1.2
USP39-211ENST00000465282 TRIM37O94972 964 aa22.56■■□□□ 1.2
USP39-211ENST00000465282 PHKG2P15735 406 aa22.56■■□□□ 1.2
USP39-211ENST00000465282 BCL11BQ9C0K0 894 aaPredicted RBP22.56■■□□□ 1.2
USP39-211ENST00000465282 NEFMP07197 916 aa22.55■■□□□ 1.2
USP39-211ENST00000465282 PRKAR2BP31323 418 aa22.55■■□□□ 1.2
USP39-211ENST00000465282 C1orf141Q5JVX7 400 aa22.55■■□□□ 1.2
USP39-211ENST00000465282 ZNF530Q6P9A1 599 aaPredicted RBP22.55■■□□□ 1.2
USP39-211ENST00000465282 DOT1LQ8TEK3 1739 aa22.54■■□□□ 1.2
USP39-211ENST00000465282 WDR43Q15061 677 aaKnown RBP eCLIP22.54■■□□□ 1.2
USP39-211ENST00000465282 AKAP4Q5JQC9 854 aa22.53■■□□□ 1.2
USP39-211ENST00000465282 GAS2L2Q8NHY3 880 aa22.53■■□□□ 1.2
USP39-211ENST00000465282 DCAF5Q96JK2 942 aa22.52■■□□□ 1.2
USP39-211ENST00000465282 BAG6P46379 1132 aa22.51■■□□□ 1.19
USP39-211ENST00000465282 MTHFSDQ2M296 383 aaKnown RBP22.51■■□□□ 1.19
USP39-211ENST00000465282 ITGB4P16144 1822 aa22.51■■□□□ 1.19
USP39-211ENST00000465282 RGPD3A6NKT7 1758 aaPredicted RBP22.5■■□□□ 1.19
USP39-211ENST00000465282 RGPD4Q7Z3J3 1758 aa22.5■■□□□ 1.19
USP39-211ENST00000465282 VIRMAQ69YN4 1812 aaKnown RBP22.5■■□□□ 1.19
USP39-211ENST00000465282 DIEXFQ68CQ4 756 aaKnown RBP22.5■■□□□ 1.19
USP39-211ENST00000465282 SCN11AQ9UI33 1791 aa22.5■■□□□ 1.19
USP39-211ENST00000465282 TOGARAM1Q9Y4F4 1720 aa22.49■■□□□ 1.19
USP39-211ENST00000465282 ACSBG1Q96GR2 724 aa22.49■■□□□ 1.19
USP39-211ENST00000465282 PHACTR3Q96KR7 559 aa22.49■■□□□ 1.19
USP39-211ENST00000465282 PLEKHF1Q96S99 279 aa22.49■■□□□ 1.19
USP39-211ENST00000465282 BTAF1O14981 1849 aa22.49■■□□□ 1.19
USP39-211ENST00000465282 ERVV-2B6SEH9 535 aa22.48■■□□□ 1.19
USP39-211ENST00000465282 KCNQ2O43526 872 aa22.48■■□□□ 1.19
USP39-211ENST00000465282 APBA3O96018 575 aa22.48■■□□□ 1.19
USP39-211ENST00000465282 PRIM1P49642 420 aaKnown RBP22.48■■□□□ 1.19
USP39-211ENST00000465282 MRS2Q9HD23 443 aa22.48■■□□□ 1.19
USP39-211ENST00000465282 PLSCR1O15162 318 aa22.47■■□□□ 1.19
USP39-211ENST00000465282 MAPK8IP3Q9UPT6 1336 aa22.47■■□□□ 1.19
USP39-211ENST00000465282 ADAMTS7Q9UKP4 1686 aa22.46■■□□□ 1.19
USP39-211ENST00000465282 GNAT3A8MTJ3 354 aa22.46■■□□□ 1.19
USP39-211ENST00000465282 ADAMTS8Q9UP79 889 aa22.46■■□□□ 1.19
USP39-211ENST00000465282 SYTL4Q96C24 671 aaPredicted RBP22.45■■□□□ 1.18
USP39-211ENST00000465282 MAP3K5Q99683 1374 aa22.45■■□□□ 1.18
USP39-211ENST00000465282 KDM6AO15550 1401 aaPredicted RBP22.44■■□□□ 1.18
USP39-211ENST00000465282 CCDC184Q52MB2 194 aa22.44■■□□□ 1.18
USP39-211ENST00000465282 PNISRQ8TF01 805 aaKnown RBP22.44■■□□□ 1.18
USP39-211ENST00000465282 DLG5Q8TDM6 1919 aa22.43■■□□□ 1.18
USP39-211ENST00000465282 HTATSF1O43719 755 aaKnown RBP22.43■■□□□ 1.18
USP39-211ENST00000465282 MPRIPQ6WCQ1 1025 aa22.43■■□□□ 1.18
USP39-211ENST00000465282 PTF1AQ7RTS3 328 aa22.43■■□□□ 1.18
USP39-211ENST00000465282 RUNDC1Q96C34 613 aa22.43■■□□□ 1.18
USP39-211ENST00000465282 TMOD3Q9NYL9 352 aa22.43■■□□□ 1.18
USP39-211ENST00000465282 CCER2I3L3R5 266 aa22.41■■□□□ 1.18
USP39-211ENST00000465282 RNMTO43148 476 aaKnown RBP22.41■■□□□ 1.18
USP39-211ENST00000465282 NFE2L2Q16236 605 aa22.41■■□□□ 1.18
USP39-211ENST00000465282 DEFB132Q7Z7B7 95 aa22.41■■□□□ 1.18
USP39-211ENST00000465282 CABP4P57796 275 aa22.4■■□□□ 1.18
USP39-211ENST00000465282 EN1Q05925 392 aaPredicted RBP22.4■■□□□ 1.18
USP39-211ENST00000465282 CAMKK2Q96RR4 588 aa22.4■■□□□ 1.18
USP39-211ENST00000465282 PIGBQ92521 554 aa22.39■■□□□ 1.17
USP39-211ENST00000465282 RTF1Q92541 710 aaKnown RBP22.39■■□□□ 1.17
USP39-211ENST00000465282 SMARCC1Q92922 1105 aaPredicted RBP22.39■■□□□ 1.17
USP39-211ENST00000465282 LY75O60449 1722 aa22.39■■□□□ 1.17
USP39-211ENST00000465282 MRC1P22897 1456 aa22.39■■□□□ 1.17
USP39-211ENST00000465282 HMGB2P26583 209 aaKnown RBP22.38■■□□□ 1.17
USP39-211ENST00000465282 LGR6Q9HBX8 967 aa22.38■■□□□ 1.17
USP39-211ENST00000465282 RREB1Q92766 1687 aa22.38■■□□□ 1.17
USP39-211ENST00000465282 SLC52A2Q9HAB3 445 aa22.37■■□□□ 1.17
USP39-211ENST00000465282 CEMIPQ8WUJ3 1361 aa22.37■■□□□ 1.17
USP39-211ENST00000465282 NFATC2IPQ8NCF5 419 aa22.36■■□□□ 1.17
USP39-211ENST00000465282 IL17REQ8NFR9 667 aa22.36■■□□□ 1.17
USP39-211ENST00000465282 SIPA1L3O60292 1781 aaPredicted RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms