RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PPFIBP1Q86W92 1011 aa22.43■■□□□ 1.18
CCDC88B-204ENST00000463837 PRM3Q9NNZ6 103 aa22.43■■□□□ 1.18
CCDC88B-204ENST00000463837 BRPF1P55201 1214 aaPredicted RBP22.43■■□□□ 1.18
CCDC88B-204ENST00000463837 NUTM2GQ5VZR2 741 aa22.43■■□□□ 1.18
CCDC88B-204ENST00000463837 MAGEC2Q9UBF1 373 aaPredicted RBP22.43■■□□□ 1.18
CCDC88B-204ENST00000463837 ESCO1Q5FWF5 840 aa22.43■■□□□ 1.18
CCDC88B-204ENST00000463837 SH2B1Q9NRF2 756 aaPredicted RBP22.43■■□□□ 1.18
CCDC88B-204ENST00000463837 SSFA2P28290 1259 aa22.42■■□□□ 1.18
CCDC88B-204ENST00000463837 KLHL40Q2TBA0 621 aa22.42■■□□□ 1.18
CCDC88B-204ENST00000463837 MX1P20591 662 aa22.42■■□□□ 1.18
CCDC88B-204ENST00000463837 MAGI1Q96QZ7 1491 aaPredicted RBP22.41■■□□□ 1.18
CCDC88B-204ENST00000463837 CCDC158Q5M9N0 1113 aa22.41■■□□□ 1.18
CCDC88B-204ENST00000463837 UPF3BQ9BZI7 483 aaKnown RBP22.41■■□□□ 1.18
CCDC88B-204ENST00000463837 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.41■■□□□ 1.187e-7■■■■■ 33
CCDC88B-204ENST00000463837 SCAND2PQ9GZW5 306 aaPredicted RBP22.41■■□□□ 1.18
CCDC88B-204ENST00000463837 SCAF11Q99590 1463 aaKnown RBP22.41■■□□□ 1.18
CCDC88B-204ENST00000463837 BIVM-ERCC5R4GMW8 1640 aa22.41■■□□□ 1.18
CCDC88B-204ENST00000463837 SRGAP3O43295 1099 aa22.41■■□□□ 1.18
CCDC88B-204ENST00000463837 SKIDA1Q1XH10 827 aa22.41■■□□□ 1.18
CCDC88B-204ENST00000463837 CDKL5O76039 1030 aa22.4■■□□□ 1.18
CCDC88B-204ENST00000463837 CLCN1P35523 988 aa22.4■■□□□ 1.18
CCDC88B-204ENST00000463837 AXDND1Q5T1B0 1012 aaPredicted RBP22.4■■□□□ 1.18
CCDC88B-204ENST00000463837 ZNHIT6Q9NWK9 470 aaKnown RBP22.4■■□□□ 1.18
CCDC88B-204ENST00000463837 TXLNBQ8N3L3 684 aa22.4■■□□□ 1.18
CCDC88B-204ENST00000463837 LAMC3Q9Y6N6 1575 aa22.4■■□□□ 1.18
CCDC88B-204ENST00000463837 UVSSAQ2YD98 709 aa22.4■■□□□ 1.18
CCDC88B-204ENST00000463837 FAM177A1Q8N128 213 aaPredicted RBP22.4■■□□□ 1.18
CCDC88B-204ENST00000463837 OFD1O75665 1012 aa22.39■■□□□ 1.18
CCDC88B-204ENST00000463837 RDXP35241 583 aaKnown RBP22.39■■□□□ 1.18
CCDC88B-204ENST00000463837 IL16Q14005 1332 aa22.39■■□□□ 1.17
CCDC88B-204ENST00000463837 FILIP1Q7Z7B0 1213 aa22.39■■□□□ 1.17
CCDC88B-204ENST00000463837 KIF1BPQ96EK5 621 aa22.39■■□□□ 1.17
CCDC88B-204ENST00000463837 CWC27Q6UX04 472 aaKnown RBP22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 XPCQ01831 940 aaPredicted RBP22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 AACSQ86V21 672 aa22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 CTNNA3Q9UI47 895 aa22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 RALGAPBQ86X10 1494 aa22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 TRIM22Q8IYM9 498 aa22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 KIF14Q15058 1648 aa22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 GLRX3O76003 335 aaKnown RBP22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 HDAC1Q13547 482 aaPredicted RBP22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 THOC2Q8NI27 1593 aaKnown RBP22.38■■□□□ 1.17
CCDC88B-204ENST00000463837 CASTP20810 708 aaKnown RBP22.37■■□□□ 1.17
CCDC88B-204ENST00000463837 NEMFO60524 1076 aa22.37■■□□□ 1.17
CCDC88B-204ENST00000463837 TRIM27P14373 513 aa22.37■■□□□ 1.17
CCDC88B-204ENST00000463837 EPS15P42566 896 aa22.37■■□□□ 1.17
CCDC88B-204ENST00000463837 PRDM10Q9NQV6 1147 aa22.37■■□□□ 1.17
CCDC88B-204ENST00000463837 FYB1O15117 783 aa22.36■■□□□ 1.17
CCDC88B-204ENST00000463837 TTC39AQ5SRH9 613 aa22.36■■□□□ 1.17
CCDC88B-204ENST00000463837 DYNC1I1O14576 645 aa22.36■■□□□ 1.17
CCDC88B-204ENST00000463837 BAG4O95429 457 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-204ENST00000463837 IGHDP01880 384 aa22.36■■□□□ 1.17
CCDC88B-204ENST00000463837 ZSCAN25Q6NSZ9 544 aa22.36■■□□□ 1.17
CCDC88B-204ENST00000463837 CGNQ9P2M7 1197 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-204ENST00000463837 PTPN14Q15678 1187 aa22.35■■□□□ 1.17
CCDC88B-204ENST00000463837 UBXN4Q92575 508 aa22.35■■□□□ 1.17
CCDC88B-204ENST00000463837 TSPYL1Q9H0U9 437 aa22.35■■□□□ 1.17
CCDC88B-204ENST00000463837 KLHL34Q8N239 644 aa22.35■■□□□ 1.17
CCDC88B-204ENST00000463837 LUC7LQ9NQ29 371 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-204ENST00000463837 DCAF8L1A6NGE4 600 aa22.35■■□□□ 1.17
CCDC88B-204ENST00000463837 RRP12Q5JTH9 1297 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-204ENST00000463837 ERICH4A6NGS2 130 aa22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 CTAGE5O15320 804 aa22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 CBX1P83916 185 aa22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 IQCEQ6IPM2 695 aa22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 PHF23Q9BUL5 403 aaPredicted RBP22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 ANO10Q9NW15 660 aa22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 TATP17735 454 aaPredicted RBP22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 STIM1Q13586 685 aa22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 IL1RAPL2Q9NP60 686 aa22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 ARHGEF11O15085 1522 aa22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 PRIMPOLQ96LW4 560 aa22.34■■□□□ 1.17
CCDC88B-204ENST00000463837 FAM135AQ9P2D6 1515 aa22.33■■□□□ 1.17
CCDC88B-204ENST00000463837 TBC1D9Q6ZT07 1266 aa22.33■■□□□ 1.17
CCDC88B-204ENST00000463837 SLC3A2P08195 630 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-204ENST00000463837 CCDC191Q8NCU4 936 aa22.33■■□□□ 1.17
CCDC88B-204ENST00000463837 CCDC43Q96MW1 224 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-204ENST00000463837 BICRAQ9NZM4 1560 aa22.33■■□□□ 1.17
CCDC88B-204ENST00000463837 KIF18AQ8NI77 898 aa22.33■■□□□ 1.16
CCDC88B-204ENST00000463837 PTPRCP08575 1304 aa22.33■■□□□ 1.16
CCDC88B-204ENST00000463837 SNX21Q969T3 373 aa22.32■■□□□ 1.16
CCDC88B-204ENST00000463837 SIL1Q9H173 461 aa22.32■■□□□ 1.16
CCDC88B-204ENST00000463837 LIMCH1Q9UPQ0 1083 aa22.32■■□□□ 1.16
CCDC88B-204ENST00000463837 EXOC6BQ9Y2D4 811 aa22.32■■□□□ 1.16
CCDC88B-204ENST00000463837 TMCO3Q6UWJ1 677 aa22.32■■□□□ 1.16
CCDC88B-204ENST00000463837 GBP3Q9H0R5 595 aa22.32■■□□□ 1.16
CCDC88B-204ENST00000463837 ANKLE2Q86XL3 938 aa22.32■■□□□ 1.16
CCDC88B-204ENST00000463837 ZSCAN12O43309 604 aa22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 CAMK4Q16566 473 aa22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 KIF6Q6ZMV9 814 aa22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 POGZQ7Z3K3 1410 aa22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 SFPQP23246 707 aaKnown RBP eCLIP22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 CALRP27797 417 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 DDX19AQ9NUU7 478 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 MTMR7Q9Y216 660 aa22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 PARD3Q8TEW0 1356 aa22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 C8orf34Q49A92 452 aa22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 NACAP1Q9BZK3 213 aa22.31■■□□□ 1.16
CCDC88B-204ENST00000463837 DISP3Q9P2K9 1392 aa22.3■■□□□ 1.16
CCDC88B-204ENST00000463837 CT47A1Q5JQC4 288 aaPredicted RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms