RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 KIF3CO14782 793 aa17.33■□□□□ 0.36
HDAC4-207ENST00000461113 CAPN15O75808 1086 aa17.33■□□□□ 0.36
HDAC4-207ENST00000461113 APLP1P51693 650 aa17.33■□□□□ 0.36
HDAC4-207ENST00000461113 MSL1Q68DK7 614 aa17.33■□□□□ 0.36
HDAC4-207ENST00000461113 TTC21BQ7Z4L5 1316 aa17.32■□□□□ 0.36
HDAC4-207ENST00000461113 DNAJC5GQ8N7S2 189 aa17.32■□□□□ 0.36
HDAC4-207ENST00000461113 BTAF1O14981 1849 aa17.32■□□□□ 0.36
HDAC4-207ENST00000461113 COL24A1Q17RW2 1714 aa17.32■□□□□ 0.36
HDAC4-207ENST00000461113 PIK3C2AO00443 1686 aa17.32■□□□□ 0.36
HDAC4-207ENST00000461113 COL23A1Q86Y22 540 aaPredicted RBP17.3■□□□□ 0.36
HDAC4-207ENST00000461113 CD2APQ9Y5K6 639 aa17.3■□□□□ 0.36
HDAC4-207ENST00000461113 COL13A1Q5TAT6 717 aaPredicted RBP17.29■□□□□ 0.36
HDAC4-207ENST00000461113 DDX54Q8TDD1 881 aaKnown RBP17.29■□□□□ 0.36
HDAC4-207ENST00000461113 SYTL4Q96C24 671 aaPredicted RBP17.29■□□□□ 0.36
HDAC4-207ENST00000461113 SLC12A5Q9H2X9 1139 aa17.29■□□□□ 0.36
HDAC4-207ENST00000461113 ERBB3P21860 1342 aa17.28■□□□□ 0.36
HDAC4-207ENST00000461113 RGPD5Q99666 1765 aa17.28■□□□□ 0.36
HDAC4-207ENST00000461113 QSER1Q2KHR3 1735 aa17.27■□□□□ 0.36
HDAC4-207ENST00000461113 PRIM1P49642 420 aaKnown RBP17.27■□□□□ 0.36
HDAC4-207ENST00000461113 WWC3Q9ULE0 1092 aa17.27■□□□□ 0.36
HDAC4-207ENST00000461113 NFAT5O94916 1531 aa17.26■□□□□ 0.35
HDAC4-207ENST00000461113 ANKRD24Q8TF21 1146 aa17.26■□□□□ 0.35
HDAC4-207ENST00000461113 CCNL1Q9UK58 526 aaPredicted RBP17.26■□□□□ 0.35
HDAC4-207ENST00000461113 KTN1Q86UP2 1357 aaKnown RBP17.26■□□□□ 0.35
HDAC4-207ENST00000461113 TTC21AQ8NDW8 1320 aa17.25■□□□□ 0.35
HDAC4-207ENST00000461113 TOMM70O94826 608 aa17.22■□□□□ 0.35
HDAC4-207ENST00000461113 IGSF1Q8N6C5 1336 aa17.21■□□□□ 0.35
HDAC4-207ENST00000461113 TUBGCP6Q96RT7 1819 aa17.21■□□□□ 0.35
HDAC4-207ENST00000461113 NSD2O96028 1365 aa17.21■□□□□ 0.35
HDAC4-207ENST00000461113 ANKRD36BQ8N2N9 1353 aa17.21■□□□□ 0.35
HDAC4-207ENST00000461113 TNS4Q8IZW8 715 aa17.21■□□□□ 0.35
HDAC4-207ENST00000461113 PRELPP51888 382 aa17.2■□□□□ 0.34
HDAC4-207ENST00000461113 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.2■□□□□ 0.34
HDAC4-207ENST00000461113 A0A1W2PP64 1363 aa17.18■□□□□ 0.34
HDAC4-207ENST00000461113 HTRA3P83110 453 aa17.18■□□□□ 0.34
HDAC4-207ENST00000461113 EDC4Q6P2E9 1401 aaKnown RBP17.17■□□□□ 0.34
HDAC4-207ENST00000461113 KLRG1Q96E93 195 aa17.17■□□□□ 0.34
HDAC4-207ENST00000461113 KIF7Q2M1P5 1343 aa17.17■□□□□ 0.34
HDAC4-207ENST00000461113 JMYQ8N9B5 988 aa17.16■□□□□ 0.34
HDAC4-207ENST00000461113 FLAD1Q8NFF5 587 aa17.16■□□□□ 0.34
HDAC4-207ENST00000461113 KAT6BQ8WYB5 2073 aa17.16■□□□□ 0.34
HDAC4-207ENST00000461113 USP31Q70CQ4 1352 aa17.15■□□□□ 0.34
HDAC4-207ENST00000461113 NME9Q86XW9 330 aa17.15■□□□□ 0.34
HDAC4-207ENST00000461113 LTV1Q96GA3 475 aaPredicted RBP17.15■□□□□ 0.34
HDAC4-207ENST00000461113 NMRK2Q9NPI5 230 aa17.15■□□□□ 0.34
HDAC4-207ENST00000461113 COG3Q96JB2 828 aa17.14■□□□□ 0.33
HDAC4-207ENST00000461113 PANK3Q9H999 370 aa17.14■□□□□ 0.33
HDAC4-207ENST00000461113 ZCRB1Q8TBF4 217 aaKnown RBP17.13■□□□□ 0.33
HDAC4-207ENST00000461113 CD163L1Q9NR16 1453 aa17.12■□□□□ 0.33
HDAC4-207ENST00000461113 KNSTRNQ9Y448 316 aa17.12■□□□□ 0.33
HDAC4-207ENST00000461113 CGNL1Q0VF96 1302 aa17.12■□□□□ 0.33
HDAC4-207ENST00000461113 LY75O60449 1722 aa17.11■□□□□ 0.33
HDAC4-207ENST00000461113 RBM46Q8TBY0 533 aaKnown RBP17.11■□□□□ 0.33
HDAC4-207ENST00000461113 SMIM5Q71RC9 77 aa17.1■□□□□ 0.33
HDAC4-207ENST00000461113 AMIGO3Q86WK7 504 aa17.1■□□□□ 0.33
HDAC4-207ENST00000461113 IP6K1Q92551 441 aa17.1■□□□□ 0.33
HDAC4-207ENST00000461113 WASHC2AQ641Q2 1341 aa17.1■□□□□ 0.33
HDAC4-207ENST00000461113 PHF14O94880 888 aa17.09■□□□□ 0.33
HDAC4-207ENST00000461113 CARD14Q9BXL6 1004 aa17.09■□□□□ 0.33
HDAC4-207ENST00000461113 NSD3Q9BZ95 1437 aa17.09■□□□□ 0.33
HDAC4-207ENST00000461113 DOT1LQ8TEK3 1739 aa17.08■□□□□ 0.32
HDAC4-207ENST00000461113 C16orf71Q8IYS4 520 aaPredicted RBP17.08■□□□□ 0.32
HDAC4-207ENST00000461113 AK7Q96M32 723 aa17.08■□□□□ 0.32
HDAC4-207ENST00000461113 FYB1O15117 783 aa17.07■□□□□ 0.32
HDAC4-207ENST00000461113 HMGB2P26583 209 aaKnown RBP17.07■□□□□ 0.32
HDAC4-207ENST00000461113 GGNBP2Q9H3C7 697 aa17.07■□□□□ 0.32
HDAC4-207ENST00000461113 FSTL1Q12841 308 aa17.06■□□□□ 0.32
HDAC4-207ENST00000461113 ARHGAP27Q6ZUM4 889 aa17.06■□□□□ 0.32
HDAC4-207ENST00000461113 BCS1LQ9Y276 419 aa17.06■□□□□ 0.32
HDAC4-207ENST00000461113 WDR90Q96KV7 1748 aa17.06■□□□□ 0.32
HDAC4-207ENST00000461113 PALLDQ8WX93 1383 aa17.05■□□□□ 0.32
HDAC4-207ENST00000461113 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.05■□□□□ 0.32
HDAC4-207ENST00000461113 CICQ96RK0 1608 aaPredicted RBP17.05■□□□□ 0.32
HDAC4-207ENST00000461113 MEGF6O75095 1541 aa17.04■□□□□ 0.32
HDAC4-207ENST00000461113 MON2Q7Z3U7 1717 aa17.04■□□□□ 0.32
HDAC4-207ENST00000461113 LTN1O94822 1766 aa17.03■□□□□ 0.32
HDAC4-207ENST00000461113 A0A0G2JLW4 131 aa17.02■□□□□ 0.32
HDAC4-207ENST00000461113 MPRIPQ6WCQ1 1025 aa17.02■□□□□ 0.32
HDAC4-207ENST00000461113 C5P01031 1676 aa17.01■□□□□ 0.31
HDAC4-207ENST00000461113 PXDNLA1KZ92 1463 aa17.01■□□□□ 0.31
HDAC4-207ENST00000461113 HSPA1AP0DMV8 641 aaKnown RBP17.01■□□□□ 0.31
HDAC4-207ENST00000461113 HSPA1BP0DMV9 641 aaKnown RBP17.01■□□□□ 0.31
HDAC4-207ENST00000461113 C9orf131Q5VYM1 1079 aa17.01■□□□□ 0.31
HDAC4-207ENST00000461113 MORC1Q86VD1 984 aa17.01■□□□□ 0.31
HDAC4-207ENST00000461113 SLC34A2O95436 690 aa17■□□□□ 0.31
HDAC4-207ENST00000461113 SSFA2P28290 1259 aa17■□□□□ 0.31
HDAC4-207ENST00000461113 HOXC9P31274 260 aa17■□□□□ 0.31
HDAC4-207ENST00000461113 AMPHP49418 695 aa17■□□□□ 0.31
HDAC4-207ENST00000461113 USP54Q70EL1 1684 aa17■□□□□ 0.31
HDAC4-207ENST00000461113 ZNF316A6NFI3 1004 aaPredicted RBP16.99■□□□□ 0.31
HDAC4-207ENST00000461113 MMP10P09238 476 aa16.99■□□□□ 0.31
HDAC4-207ENST00000461113 TGFB2P61812 414 aa16.99■□□□□ 0.31
HDAC4-207ENST00000461113 USHBP1Q8N6Y0 703 aa16.99■□□□□ 0.31
HDAC4-207ENST00000461113 SMARCC1Q92922 1105 aaPredicted RBP16.99■□□□□ 0.31
HDAC4-207ENST00000461113 MAP3K19Q56UN5 1328 aa16.98■□□□□ 0.31
HDAC4-207ENST00000461113 FCHSD2O94868 740 aa16.98■□□□□ 0.31
HDAC4-207ENST00000461113 FBLN1P23142 703 aa16.98■□□□□ 0.31
HDAC4-207ENST00000461113 NBPF6Q5VWK0 638 aa16.98■□□□□ 0.31
HDAC4-207ENST00000461113 NBPF4Q96M43 638 aa16.98■□□□□ 0.31
HDAC4-207ENST00000461113 RRAGCQ9HB90 399 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms