RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 OVOS2A0A0G2JMS6 1433 aa13.53□□□□□ -0.24
UPF2-204ENST00000460569 FCHSD2O94868 740 aa13.52□□□□□ -0.25
UPF2-204ENST00000460569 BARGINQ6ZT62 677 aa13.52□□□□□ -0.25
UPF2-204ENST00000460569 TNS2Q63HR2 1409 aa13.51□□□□□ -0.25
UPF2-204ENST00000460569 MAPK8IP3Q9UPT6 1336 aa13.51□□□□□ -0.25
UPF2-204ENST00000460569 RBM6P78332 1123 aaKnown RBP13.51□□□□□ -0.25
UPF2-204ENST00000460569 POTEAQ6S8J7 498 aa13.51□□□□□ -0.25
UPF2-204ENST00000460569 CCDC146Q8IYE0 955 aa13.51□□□□□ -0.25
UPF2-204ENST00000460569 BRWD3Q6RI45 1802 aa13.5□□□□□ -0.25
UPF2-204ENST00000460569 PLEKHG2Q9H7P9 1386 aa13.5□□□□□ -0.25
UPF2-204ENST00000460569 NEFMP07197 916 aa13.5□□□□□ -0.25
UPF2-204ENST00000460569 CDCA7Q9BWT1 371 aaPredicted RBP13.5□□□□□ -0.25
UPF2-204ENST00000460569 PNNQ9H307 717 aaKnown RBP13.5□□□□□ -0.25
UPF2-204ENST00000460569 DLG5Q8TDM6 1919 aa13.5□□□□□ -0.25
UPF2-204ENST00000460569 RXRBP28702 533 aa13.49□□□□□ -0.25
UPF2-204ENST00000460569 VIRMAQ69YN4 1812 aaKnown RBP13.48□□□□□ -0.25
UPF2-204ENST00000460569 RUNDC1Q96C34 613 aa13.48□□□□□ -0.25
UPF2-204ENST00000460569 RGS12O14924 1447 aa13.47□□□□□ -0.25
UPF2-204ENST00000460569 DDB1Q16531 1140 aa13.47□□□□□ -0.25
UPF2-204ENST00000460569 AMOTQ4VCS5 1084 aa13.47□□□□□ -0.25
UPF2-204ENST00000460569 PLEKHO1Q53GL0 409 aaPredicted RBP13.47□□□□□ -0.25
UPF2-204ENST00000460569 SEPT12Q8IYM1 358 aa13.47□□□□□ -0.25
UPF2-204ENST00000460569 ZCRB1Q8TBF4 217 aaKnown RBP13.47□□□□□ -0.25
UPF2-204ENST00000460569 PHACTR3Q96KR7 559 aa13.47□□□□□ -0.25
UPF2-204ENST00000460569 PLEKHF1Q96S99 279 aa13.47□□□□□ -0.25
UPF2-204ENST00000460569 SPG7Q9UQ90 795 aa13.47□□□□□ -0.25
UPF2-204ENST00000460569 PCDH11XQ9BZA7 1347 aa13.46□□□□□ -0.25
UPF2-204ENST00000460569 PCDH11YQ9BZA8 1340 aa13.46□□□□□ -0.25
UPF2-204ENST00000460569 EXOC5O00471 708 aa13.46□□□□□ -0.25
UPF2-204ENST00000460569 ZNF530Q6P9A1 599 aaPredicted RBP13.46□□□□□ -0.25
UPF2-204ENST00000460569 ONECUT3O60422 494 aaPredicted RBP13.45□□□□□ -0.26
UPF2-204ENST00000460569 MTHFSDQ2M296 383 aaKnown RBP13.45□□□□□ -0.26
UPF2-204ENST00000460569 GAS2L2Q8NHY3 880 aa13.45□□□□□ -0.26
UPF2-204ENST00000460569 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.45□□□□□ -0.26
UPF2-204ENST00000460569 DOT1LQ8TEK3 1739 aa13.44□□□□□ -0.26
UPF2-204ENST00000460569 C1orf141Q5JVX7 400 aa13.44□□□□□ -0.26
UPF2-204ENST00000460569 DDX54Q8TDD1 881 aaKnown RBP13.44□□□□□ -0.26
UPF2-204ENST00000460569 SCN11AQ9UI33 1791 aa13.43□□□□□ -0.26
UPF2-204ENST00000460569 SENP3-EIF4A1A0A087X0R7 540 aa13.43□□□□□ -0.26
UPF2-204ENST00000460569 APAF1O14727 1248 aa13.43□□□□□ -0.26
UPF2-204ENST00000460569 PDE3BQ13370 1112 aa13.43□□□□□ -0.26
UPF2-204ENST00000460569 NFE2L2Q16236 605 aa13.43□□□□□ -0.26
UPF2-204ENST00000460569 RRP7AQ9Y3A4 280 aaKnown RBP13.43□□□□□ -0.26
UPF2-204ENST00000460569 TOGARAM1Q9Y4F4 1720 aa13.43□□□□□ -0.26
UPF2-204ENST00000460569 MAP3K5Q99683 1374 aa13.43□□□□□ -0.26
UPF2-204ENST00000460569 CYP27B1O15528 508 aa13.42□□□□□ -0.26
UPF2-204ENST00000460569 PHKG2P15735 406 aa13.42□□□□□ -0.26
UPF2-204ENST00000460569 NEUROD2Q15784 382 aa13.42□□□□□ -0.26
UPF2-204ENST00000460569 IFNL2Q8IZJ0 200 aa13.42□□□□□ -0.26
UPF2-204ENST00000460569 ADAMTS7Q9UKP4 1686 aa13.41□□□□□ -0.26
UPF2-204ENST00000460569 TMPOP42166 694 aaKnown RBP13.41□□□□□ -0.26
UPF2-204ENST00000460569 AKAP4Q5JQC9 854 aa13.41□□□□□ -0.26
UPF2-204ENST00000460569 GNAT3A8MTJ3 354 aa13.4□□□□□ -0.26
UPF2-204ENST00000460569 RIPK4P57078 832 aa13.4□□□□□ -0.26
UPF2-204ENST00000460569 KRT27Q7Z3Y8 459 aa13.4□□□□□ -0.26
UPF2-204ENST00000460569 MARCH10Q8NA82 808 aaPredicted RBP13.4□□□□□ -0.26
UPF2-204ENST00000460569 KDM6AO15550 1401 aaPredicted RBP13.39□□□□□ -0.27
UPF2-204ENST00000460569 ITGB4P16144 1822 aa13.39□□□□□ -0.27
UPF2-204ENST00000460569 SBF2Q86WG5 1849 aa13.39□□□□□ -0.27
UPF2-204ENST00000460569 HSP90AB1P08238 724 aaKnown RBP13.39□□□□□ -0.27
UPF2-204ENST00000460569 NHSQ6T4R5 1651 aa13.39□□□□□ -0.27
UPF2-204ENST00000460569 KAT6BQ8WYB5 2073 aa13.39□□□□□ -0.27
UPF2-204ENST00000460569 SIPA1L3O60292 1781 aaPredicted RBP13.38□□□□□ -0.27
UPF2-204ENST00000460569 LMOD3Q0VAK6 560 aa13.38□□□□□ -0.27
UPF2-204ENST00000460569 FAM182BQ5T319 152 aa13.38□□□□□ -0.27
UPF2-204ENST00000460569 MPRIPQ6WCQ1 1025 aa13.38□□□□□ -0.27
UPF2-204ENST00000460569 RTF1Q92541 710 aaKnown RBP13.38□□□□□ -0.27
UPF2-204ENST00000460569 SALL2Q9Y467 1007 aaPredicted RBP13.38□□□□□ -0.27
UPF2-204ENST00000460569 HNRNPUQ00839 825 aaKnown RBP eCLIP13.37□□□□□ -0.27
UPF2-204ENST00000460569 DCAF5Q96JK2 942 aa13.37□□□□□ -0.27
UPF2-204ENST00000460569 MRC1P22897 1456 aa13.36□□□□□ -0.27
UPF2-204ENST00000460569 RNMTO43148 476 aaKnown RBP13.36□□□□□ -0.27
UPF2-204ENST00000460569 HTATSF1O43719 755 aaKnown RBP13.36□□□□□ -0.27
UPF2-204ENST00000460569 DCTN1Q14203 1278 aa13.36□□□□□ -0.27
UPF2-204ENST00000460569 NKX1-1Q15270 411 aaPredicted RBP13.36□□□□□ -0.27
UPF2-204ENST00000460569 MCM10Q7L590 875 aa13.36□□□□□ -0.27
UPF2-204ENST00000460569 THUMPD2Q9BTF0 503 aaKnown RBP13.35□□□□□ -0.27
UPF2-204ENST00000460569 LGR6Q9HBX8 967 aa13.35□□□□□ -0.27
UPF2-204ENST00000460569 TRIM35Q9UPQ4 493 aa13.35□□□□□ -0.27
UPF2-204ENST00000460569 BCL9O00512 1426 aa13.35□□□□□ -0.27
UPF2-204ENST00000460569 CEMIPQ8WUJ3 1361 aa13.34□□□□□ -0.27
UPF2-204ENST00000460569 NGEFQ8N5V2 710 aa13.34□□□□□ -0.27
UPF2-204ENST00000460569 IL17REQ8NFR9 667 aa13.34□□□□□ -0.27
UPF2-204ENST00000460569 ACSBG1Q96GR2 724 aa13.34□□□□□ -0.27
UPF2-204ENST00000460569 YTHDC1Q96MU7 727 aaKnown RBP13.34□□□□□ -0.27
UPF2-204ENST00000460569 BTAF1O14981 1849 aa13.34□□□□□ -0.27
UPF2-204ENST00000460569 TEFQ10587 303 aa13.33□□□□□ -0.28
UPF2-204ENST00000460569 CCDC27Q2M243 656 aa13.33□□□□□ -0.28
UPF2-204ENST00000460569 FAM196AQ6ZSG2 479 aa13.33□□□□□ -0.28
UPF2-204ENST00000460569 SYTL4Q96C24 671 aaPredicted RBP13.33□□□□□ -0.28
UPF2-204ENST00000460569 TNS1Q9HBL0 1735 aaKnown RBP13.33□□□□□ -0.28
UPF2-204ENST00000460569 KDM3BQ7LBC6 1761 aa13.32□□□□□ -0.28
UPF2-204ENST00000460569 PAPPAQ13219 1627 aa13.32□□□□□ -0.28
UPF2-204ENST00000460569 ERVV-2B6SEH9 535 aa13.32□□□□□ -0.28
UPF2-204ENST00000460569 CABP4P57796 275 aa13.32□□□□□ -0.28
UPF2-204ENST00000460569 NCBP3Q53F19 620 aaKnown RBP13.32□□□□□ -0.28
UPF2-204ENST00000460569 WWC1Q8IX03 1113 aa13.32□□□□□ -0.28
UPF2-204ENST00000460569 SLC52A2Q9HAB3 445 aa13.32□□□□□ -0.28
UPF2-204ENST00000460569 PRIM1P49642 420 aaKnown RBP13.31□□□□□ -0.28
UPF2-204ENST00000460569 TMOD3Q9NYL9 352 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms