RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 RARSP54136 660 aaKnown RBP7.56□□□□□ -1.2
VPS13D-202ENST00000460333 ALDH1L2Q3SY69 923 aa7.56□□□□□ -1.2
VPS13D-202ENST00000460333 GPS2Q13227 327 aa7.56□□□□□ -1.2
VPS13D-202ENST00000460333 NOM1Q5C9Z4 860 aaKnown RBP7.56□□□□□ -1.2
VPS13D-202ENST00000460333 NUTM2GQ5VZR2 741 aa7.56□□□□□ -1.2
VPS13D-202ENST00000460333 FLT4P35916 1363 aa7.55□□□□□ -1.2
VPS13D-202ENST00000460333 SLIT1O75093 1534 aa7.55□□□□□ -1.2
VPS13D-202ENST00000460333 NPHP4O75161 1426 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-202ENST00000460333 C1orf141Q5JVX7 400 aa7.55□□□□□ -1.2
VPS13D-202ENST00000460333 TSR2Q969E8 191 aaKnown RBP7.55□□□□□ -1.2
VPS13D-202ENST00000460333 CPS1P31327 1500 aa7.55□□□□□ -1.2
VPS13D-202ENST00000460333 UBAP1LF5GYI3 381 aa7.55□□□□□ -1.2
VPS13D-202ENST00000460333 CPSF1Q10570 1443 aaKnown RBP7.55□□□□□ -1.2
VPS13D-202ENST00000460333 IL13P35225 146 aa7.55□□□□□ -1.2
VPS13D-202ENST00000460333 TRMT2AQ8IZ69 625 aaKnown RBP7.55□□□□□ -1.2
VPS13D-202ENST00000460333 GRPEL1Q9HAV7 217 aa7.55□□□□□ -1.2
VPS13D-202ENST00000460333 NCKAP5LQ9HCH0 1330 aa7.55□□□□□ -1.2
VPS13D-202ENST00000460333 USP6P35125 1406 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 ARHGAP23Q9P227 1491 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 KIAA1211Q6ZU35 1233 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 PANK1Q8TE04 598 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 C19orf44Q9H6X5 657 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 ATP6V1DQ9Y5K8 247 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 UBR1Q8IWV7 1749 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 PRR36Q9H6K5 1346 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 CDK12Q9NYV4 1490 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-202ENST00000460333 TWISTNBQ3B726 338 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-202ENST00000460333 CADPS2Q86UW7 1296 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 ZRANB1Q9UGI0 708 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 TSPYL4Q9UJ04 414 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 CDC42BPGQ6DT37 1551 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 SBNO1A3KN83 1393 aa7.54□□□□□ -1.2
VPS13D-202ENST00000460333 CEP170BQ9Y4F5 1589 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-202ENST00000460333 CALRP27797 417 aaKnown RBP7.54□□□□□ -1.2
VPS13D-202ENST00000460333 PLEKHO1Q53GL0 409 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-202ENST00000460333 NUTM2BA6NNL0 878 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-202ENST00000460333 NUTM2EB1AL46 878 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-202ENST00000460333 EIF4A2Q14240 407 aaKnown RBP7.53□□□□□ -1.2
VPS13D-202ENST00000460333 TPRNQ4KMQ1 711 aa7.53□□□□□ -1.2
VPS13D-202ENST00000460333 ATF7IPQ6VMQ6 1270 aa7.53□□□□□ -1.2
VPS13D-202ENST00000460333 NUTM2AQ8IVF1 878 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-202ENST00000460333 HMGB2P26583 209 aaKnown RBP7.53□□□□□ -1.2
VPS13D-202ENST00000460333 TEFQ10587 303 aa7.53□□□□□ -1.2
VPS13D-202ENST00000460333 TSPYL1Q9H0U9 437 aa7.53□□□□□ -1.2
VPS13D-202ENST00000460333 CWC15Q9P013 229 aaKnown RBP7.53□□□□□ -1.2
VPS13D-202ENST00000460333 HDAC5Q9UQL6 1122 aa7.53□□□□□ -1.2
VPS13D-202ENST00000460333 ELL2O00472 640 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-202ENST00000460333 MVPQ14764 893 aaKnown RBP7.53□□□□□ -1.2
VPS13D-202ENST00000460333 PNPLA6Q8IY17 1366 aa7.53□□□□□ -1.2
VPS13D-202ENST00000460333 RIMS1Q86UR5 1692 aaKnown RBP7.52□□□□□ -1.21
VPS13D-202ENST00000460333 KIF24Q5T7B8 1368 aa7.52□□□□□ -1.21
VPS13D-202ENST00000460333 ZSCAN30Q86W11 494 aa7.52□□□□□ -1.21
VPS13D-202ENST00000460333 PLEKHF1Q96S99 279 aa7.52□□□□□ -1.21
VPS13D-202ENST00000460333 CIZ1Q9ULV3 898 aaPredicted RBP7.52□□□□□ -1.21
VPS13D-202ENST00000460333 HMMRO75330 724 aa7.52□□□□□ -1.21
VPS13D-202ENST00000460333 FBLN1P23142 703 aa7.52□□□□□ -1.21
VPS13D-202ENST00000460333 KRT28Q7Z3Y7 464 aa7.52□□□□□ -1.21
VPS13D-202ENST00000460333 C22orf23Q9BZE7 217 aa7.52□□□□□ -1.21
VPS13D-202ENST00000460333 NOB1Q9ULX3 412 aaKnown RBP7.52□□□□□ -1.21
VPS13D-202ENST00000460333 C3P01024 1663 aa7.52□□□□□ -1.21
VPS13D-202ENST00000460333 SETD1BQ9UPS6 1966 aaKnown RBP7.52□□□□□ -1.21
VPS13D-202ENST00000460333 HSP90AB2PQ58FF8 381 aa7.52□□□□□ -1.21
VPS13D-202ENST00000460333 GNAT3A8MTJ3 354 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 FOXO3O43524 673 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 CLCN1P35523 988 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 RAPGEF4Q8WZA2 1011 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 ARGLU1Q9NWB6 273 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-202ENST00000460333 MSH6P52701 1360 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 MAP3K19Q56UN5 1328 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 KNDC1Q76NI1 1749 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 ARHGEF10O15013 1369 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 UQCRHLA0A096LP55 91 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 MBD3O95983 291 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 UQCRHP07919 91 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 LETM1O95202 739 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-202ENST00000460333 AMOTQ4VCS5 1084 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 C20orf194Q5TEA3 1177 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 PDCL2Q8N4E4 241 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 SSH1Q8WYL5 1049 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 SPINK5Q9NQ38 1064 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-202ENST00000460333 TRIM35Q9UPQ4 493 aa7.51□□□□□ -1.21
VPS13D-202ENST00000460333 KCNJ4P48050 445 aa7.5□□□□□ -1.21
VPS13D-202ENST00000460333 CCDC30Q5VVM6 783 aa7.5□□□□□ -1.21
VPS13D-202ENST00000460333 ARHGAP45Q92619 1136 aa7.5□□□□□ -1.21
VPS13D-202ENST00000460333 MCM4P33991 863 aa7.5□□□□□ -1.21
VPS13D-202ENST00000460333 NPHP3Q7Z494 1330 aa7.5□□□□□ -1.21
VPS13D-202ENST00000460333 RBM10P98175 930 aaKnown RBP7.5□□□□□ -1.21
VPS13D-202ENST00000460333 ITSN1Q15811 1721 aa7.5□□□□□ -1.21
VPS13D-202ENST00000460333 KIF20BQ96Q89 1820 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 KIF3AQ9Y496 699 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 CD163L1Q9NR16 1453 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 FOXD4L1Q9NU39 408 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 PTPRUQ92729 1446 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 ADGRL3Q9HAR2 1447 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 USP31Q70CQ4 1352 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 APPP05067 770 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 HOXC9P31274 260 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 IP6K1Q92551 441 aa7.49□□□□□ -1.21
VPS13D-202ENST00000460333 RBM33Q96EV2 1170 aaKnown RBP7.49□□□□□ -1.21
VPS13D-202ENST00000460333 PHACTR3Q96KR7 559 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms