RNA–Protein interactions for RNA: ENST00000459895.1

COL18A1-206, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 3

Gene COL18A1, Length 588 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-206ENST00000459895 PLEKHG2Q9H7P9 1386 aa17.29■□□□□ 0.36
COL18A1-206ENST00000459895 DIAPH1O60610 1272 aaKnown RBP17.29■□□□□ 0.36
COL18A1-206ENST00000459895 RGPD3A6NKT7 1758 aaPredicted RBP17.29■□□□□ 0.36
COL18A1-206ENST00000459895 RGPD4Q7Z3J3 1758 aa17.29■□□□□ 0.36
COL18A1-206ENST00000459895 BTAF1O14981 1849 aa17.28■□□□□ 0.36
COL18A1-206ENST00000459895 RAPGEF4Q8WZA2 1011 aa17.28■□□□□ 0.36
COL18A1-206ENST00000459895 CFAP53Q96M91 514 aa17.28■□□□□ 0.36
COL18A1-206ENST00000459895 RREB1Q92766 1687 aa17.27■□□□□ 0.36
COL18A1-206ENST00000459895 ADAMTS7Q9UKP4 1686 aa17.26■□□□□ 0.35
COL18A1-206ENST00000459895 ITGB4P16144 1822 aa17.26■□□□□ 0.35
COL18A1-206ENST00000459895 TATP17735 454 aaPredicted RBP17.26■□□□□ 0.35
COL18A1-206ENST00000459895 MARCH10Q8NA82 808 aaPredicted RBP17.26■□□□□ 0.35
COL18A1-206ENST00000459895 BCL9O00512 1426 aa17.26■□□□□ 0.35
COL18A1-206ENST00000459895 SCN11AQ9UI33 1791 aa17.25■□□□□ 0.35
COL18A1-206ENST00000459895 PDE3BQ13370 1112 aa17.25■□□□□ 0.35
COL18A1-206ENST00000459895 SULT6B1Q6IMI4 303 aa17.25■□□□□ 0.35
COL18A1-206ENST00000459895 PCDH11XQ9BZA7 1347 aa17.24■□□□□ 0.35
COL18A1-206ENST00000459895 PCDH11YQ9BZA8 1340 aa17.24■□□□□ 0.35
COL18A1-206ENST00000459895 U2SURPO15042 1029 aaKnown RBP17.24■□□□□ 0.35
COL18A1-206ENST00000459895 HMOX1P09601 288 aa17.24■□□□□ 0.35
COL18A1-206ENST00000459895 DLG5Q8TDM6 1919 aa17.23■□□□□ 0.35
COL18A1-206ENST00000459895 NUP188Q5SRE5 1749 aa17.22■□□□□ 0.35
COL18A1-206ENST00000459895 EXOC5O00471 708 aa17.22■□□□□ 0.35
COL18A1-206ENST00000459895 SOCS7O14512 581 aa17.22■□□□□ 0.35
COL18A1-206ENST00000459895 ZCRB1Q8TBF4 217 aaKnown RBP17.22■□□□□ 0.35
COL18A1-206ENST00000459895 PAPPAQ13219 1627 aa17.21■□□□□ 0.35
COL18A1-206ENST00000459895 KDM6AO15550 1401 aaPredicted RBP17.21■□□□□ 0.34
COL18A1-206ENST00000459895 MRC1P22897 1456 aa17.2■□□□□ 0.34
COL18A1-206ENST00000459895 UPF1Q92900 1129 aaKnown RBP eCLIP17.2■□□□□ 0.34
COL18A1-206ENST00000459895 SIPA1L3O60292 1781 aaPredicted RBP17.2■□□□□ 0.34
COL18A1-206ENST00000459895 LY75O60449 1722 aa17.19■□□□□ 0.34
COL18A1-206ENST00000459895 CYP27B1O15528 508 aa17.19■□□□□ 0.34
COL18A1-206ENST00000459895 ANP32CO43423 234 aa17.19■□□□□ 0.34
COL18A1-206ENST00000459895 DDX54Q8TDD1 881 aaKnown RBP17.19■□□□□ 0.34
COL18A1-206ENST00000459895 RSPH6AQ9H0K4 717 aa17.19■□□□□ 0.34
COL18A1-206ENST00000459895 FAM196AQ6ZSG2 479 aa17.18■□□□□ 0.34
COL18A1-206ENST00000459895 U2AF1L5P0DN76 240 aaPredicted RBP17.17■□□□□ 0.34
COL18A1-206ENST00000459895 U2AF1Q01081 240 aaKnown RBP eCLIP17.17■□□□□ 0.34
COL18A1-206ENST00000459895 SPG7Q9UQ90 795 aa17.17■□□□□ 0.34
COL18A1-206ENST00000459895 NUDCQ9Y266 331 aa17.17■□□□□ 0.34
COL18A1-206ENST00000459895 PRKAR2BP31323 418 aa17.16■□□□□ 0.34
COL18A1-206ENST00000459895 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.16■□□□□ 0.34
COL18A1-206ENST00000459895 TRIM37O94972 964 aa17.15■□□□□ 0.34
COL18A1-206ENST00000459895 PHKG2P15735 406 aa17.15■□□□□ 0.34
COL18A1-206ENST00000459895 CCDC184Q52MB2 194 aa17.15■□□□□ 0.34
COL18A1-206ENST00000459895 ZNF530Q6P9A1 599 aaPredicted RBP17.15■□□□□ 0.34
COL18A1-206ENST00000459895 PTF1AQ7RTS3 328 aa17.15■□□□□ 0.34
COL18A1-206ENST00000459895 ACSBG1Q96GR2 724 aa17.15■□□□□ 0.34
COL18A1-206ENST00000459895 AMOTQ4VCS5 1084 aa17.13■□□□□ 0.33
COL18A1-206ENST00000459895 MAP3K5Q99683 1374 aa17.13■□□□□ 0.33
COL18A1-206ENST00000459895 UBR2Q8IWV8 1755 aa17.12■□□□□ 0.33
COL18A1-206ENST00000459895 KCNQ2O43526 872 aa17.12■□□□□ 0.33
COL18A1-206ENST00000459895 PLEKHO1Q53GL0 409 aaPredicted RBP17.12■□□□□ 0.33
COL18A1-206ENST00000459895 C5P01031 1676 aa17.12■□□□□ 0.33
COL18A1-206ENST00000459895 CICQ96RK0 1608 aaPredicted RBP17.11■□□□□ 0.33
COL18A1-206ENST00000459895 MTHFSDQ2M296 383 aaKnown RBP17.11■□□□□ 0.33
COL18A1-206ENST00000459895 IFNL2Q8IZJ0 200 aa17.11■□□□□ 0.33
COL18A1-206ENST00000459895 PHACTR3Q96KR7 559 aa17.1■□□□□ 0.33
COL18A1-206ENST00000459895 FCHSD2O94868 740 aa17.09■□□□□ 0.33
COL18A1-206ENST00000459895 WDR43Q15061 677 aaKnown RBP eCLIP17.09■□□□□ 0.33
COL18A1-206ENST00000459895 NKX1-1Q15270 411 aaPredicted RBP17.09■□□□□ 0.33
COL18A1-206ENST00000459895 C1orf141Q5JVX7 400 aa17.09■□□□□ 0.33
COL18A1-206ENST00000459895 DEFB132Q7Z7B7 95 aa17.09■□□□□ 0.33
COL18A1-206ENST00000459895 MRS2Q9HD23 443 aa17.09■□□□□ 0.33
COL18A1-206ENST00000459895 TJP1Q07157 1748 aa17.09■□□□□ 0.33
COL18A1-206ENST00000459895 TAF1LQ8IZX4 1826 aa17.09■□□□□ 0.33
COL18A1-206ENST00000459895 TUBGCP6Q96RT7 1819 aa17.09■□□□□ 0.33
COL18A1-206ENST00000459895 KAT6BQ8WYB5 2073 aa17.09■□□□□ 0.33
COL18A1-206ENST00000459895 KDM3BQ7LBC6 1761 aa17.08■□□□□ 0.33
COL18A1-206ENST00000459895 SF3B2Q13435 895 aaKnown RBP17.08■□□□□ 0.32
COL18A1-206ENST00000459895 SYTL4Q96C24 671 aaPredicted RBP17.08■□□□□ 0.32
COL18A1-206ENST00000459895 PLEKHF1Q96S99 279 aa17.08■□□□□ 0.32
COL18A1-206ENST00000459895 BCL11BQ9C0K0 894 aaPredicted RBP17.08■□□□□ 0.32
COL18A1-206ENST00000459895 COL5A3P25940 1745 aaPredicted RBP17.07■□□□□ 0.32
COL18A1-206ENST00000459895 ZNF831Q5JPB2 1677 aa17.07■□□□□ 0.32
COL18A1-206ENST00000459895 AKAP4Q5JQC9 854 aa17.07■□□□□ 0.32
COL18A1-206ENST00000459895 CCDC125Q86Z20 511 aa17.07■□□□□ 0.32
COL18A1-206ENST00000459895 GAS2L2Q8NHY3 880 aa17.07■□□□□ 0.32
COL18A1-206ENST00000459895 MAPK8IP3Q9UPT6 1336 aa17.06■□□□□ 0.32
COL18A1-206ENST00000459895 BAG6P46379 1132 aa17.06■□□□□ 0.32
COL18A1-206ENST00000459895 PRIM1P49642 420 aaKnown RBP17.06■□□□□ 0.32
COL18A1-206ENST00000459895 DIEXFQ68CQ4 756 aaKnown RBP17.06■□□□□ 0.32
COL18A1-206ENST00000459895 CCDC146Q8IYE0 955 aa17.06■□□□□ 0.32
COL18A1-206ENST00000459895 APBA3O96018 575 aa17.05■□□□□ 0.32
COL18A1-206ENST00000459895 MPRIPQ6WCQ1 1025 aa17.05■□□□□ 0.32
COL18A1-206ENST00000459895 DCAF5Q96JK2 942 aa17.05■□□□□ 0.32
COL18A1-206ENST00000459895 KCPQ6ZWJ8 1503 aa17.05■□□□□ 0.32
COL18A1-206ENST00000459895 HSP90AB1P08238 724 aaKnown RBP17.04■□□□□ 0.32
COL18A1-206ENST00000459895 EN1Q05925 392 aaPredicted RBP17.04■□□□□ 0.32
COL18A1-206ENST00000459895 ADAMTS8Q9UP79 889 aa17.04■□□□□ 0.32
COL18A1-206ENST00000459895 CEMIPQ8WUJ3 1361 aa17.03■□□□□ 0.32
COL18A1-206ENST00000459895 PALLDQ8WX93 1383 aa17.03■□□□□ 0.32
COL18A1-206ENST00000459895 LAMB4A4D0S4 1761 aa17.02■□□□□ 0.32
COL18A1-206ENST00000459895 QSER1Q2KHR3 1735 aa17.02■□□□□ 0.32
COL18A1-206ENST00000459895 EZH2Q15910 746 aaKnown RBP17.02■□□□□ 0.32
COL18A1-206ENST00000459895 TMOD3Q9NYL9 352 aa17.02■□□□□ 0.32
COL18A1-206ENST00000459895 C4BP0C0L5 1744 aa17.01■□□□□ 0.31
COL18A1-206ENST00000459895 GNAT3A8MTJ3 354 aa17.01■□□□□ 0.31
COL18A1-206ENST00000459895 RNMTO43148 476 aaKnown RBP17.01■□□□□ 0.31
COL18A1-206ENST00000459895 NFE2L2Q16236 605 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms