RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ABCA8O94911 1581 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 GOLGA3Q08378 1498 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 STRCQ7RTU9 1775 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 RICTORQ6R327 1708 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 TCF3P15923 654 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 MARSP56192 900 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 HSP90AA2PQ14568 343 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 PCGF6Q9BYE7 350 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 SIGLEC1Q9BZZ2 1709 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 ANKRD33BA6NCL7 494 aa6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 FBXO45P0C2W1 286 aa6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 ARID4AP29374 1257 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 SOX11P35716 441 aa6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 ELOAQ14241 798 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 TTC37Q6PGP7 1564 aa6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 SKIP12755 728 aa6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 FOXD4L6Q3SYB3 417 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 ARSIQ5FYB1 569 aa6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 FOXD4L3Q6VB84 417 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 SLF2Q8IX21 1173 aa6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 FAM174AQ8TBP5 190 aa6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 SIRT1Q96EB6 747 aa6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 PPP1R1BQ9UD71 204 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-209ENST00000456975 EIF4G2P78344 907 aaKnown RBP eCLIP6.24□□□□□ -1.41
CCDC88A-209ENST00000456975 PROX2Q3B8N5 592 aa6.24□□□□□ -1.41
CCDC88A-209ENST00000456975 SPTY2D1Q68D10 685 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-209ENST00000456975 SH3BP1Q9Y3L3 701 aa6.24□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L5A8MUK1 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L15C9J2P7 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L10C9JJH3 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L13C9JLJ4 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L12C9JPN9 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L11C9JVI0 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L21D6R901 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L18D6R9N7 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L22D6RA61 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L17D6RBQ6 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L19D6RCP7 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L20D6RJB6 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L24Q0WX57 530 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 FUT2Q10981 343 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 FANCAO15360 1455 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 SAMD9Q5K651 1589 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 CFAP74Q9C0B2 1584 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 NBPF26B4DH59 902 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 C11orf95C9JLR9 678 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 SMARCA5O60264 1052 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 APPP05067 770 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 USP46P62068 366 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 ANO2Q9NQ90 1003 aa6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 MKRN1Q9UHC7 482 aaKnown RBP6.23□□□□□ -1.41
CCDC88A-209ENST00000456975 RGS3P49796 1198 aa6.22□□□□□ -1.41
CCDC88A-209ENST00000456975 IRX3P78415 501 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-209ENST00000456975 KCNH2Q12809 1159 aa6.22□□□□□ -1.41
CCDC88A-209ENST00000456975 NPAS4Q8IUM7 802 aa6.22□□□□□ -1.41
CCDC88A-209ENST00000456975 TMEM51Q9NW97 253 aa6.22□□□□□ -1.41
CCDC88A-209ENST00000456975 NEO1Q92859 1461 aa6.22□□□□□ -1.41
CCDC88A-209ENST00000456975 POGZQ7Z3K3 1410 aa6.22□□□□□ -1.41
CCDC88A-209ENST00000456975 RAPGEF3O95398 923 aa6.22□□□□□ -1.41
CCDC88A-209ENST00000456975 RASA1P20936 1047 aa6.22□□□□□ -1.41
CCDC88A-209ENST00000456975 TRIM6-TRIM34B2RNG4 842 aa6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 LGR5O75473 907 aa6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 PTK7Q13308 1070 aa6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 NCOA4Q13772 614 aa6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 RBM19Q9Y4C8 960 aaKnown RBP6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 EFCAB5A4FU69 1503 aa6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 ZFYVE16Q7Z3T8 1539 aa6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 PHLDB1Q86UU1 1377 aa6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 ATP2B4P23634 1241 aa6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 NBPF11Q86T75 865 aa6.21□□□□□ -1.42
CCDC88A-209ENST00000456975 TTC36A6NLP5 189 aa6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 FAM196BA6NMK8 535 aa6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 ABL1P00519 1130 aa6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 NR1H3Q13133 447 aa6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 ZNF211Q13398 564 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 NBPF1Q3BBV0 1214 aa6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 SWT1Q5T5J6 900 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 NOL8Q76FK4 1167 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 FAM200AQ8TCP9 573 aa6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 ANP32BQ92688 251 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 ZNF594Q96JF6 807 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-209ENST00000456975 NBPF20Q3BBV1 942 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 RINLQ6ZS11 566 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 PACS2Q86VP3 889 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 PNMA1Q8ND90 353 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 LHX6Q9UPM6 363 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 ZMYM4Q5VZL5 1548 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 HAX1O00165 279 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 ERCC3P19447 782 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 TSHZ1Q6ZSZ6 1077 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 DRC1Q96MC2 740 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 AKNAQ7Z591 1439 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 ARHGAP35Q9NRY4 1499 aa6.19□□□□□ -1.42
CCDC88A-209ENST00000456975 YEATS2Q9ULM3 1422 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 PRMT3O60678 531 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 EGFL6Q8IUX8 553 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 RAPGEF6Q8TEU7 1601 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 FANCIQ9NVI1 1328 aa6.18□□□□□ -1.42
CCDC88A-209ENST00000456975 SUPT6HQ7KZ85 1726 aaKnown RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms