RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 NRKQ7Z2Y5 1582 aa17.25■□□□□ 0.35
CLK3-203ENST00000454830 CHL1O00533 1208 aa17.25■□□□□ 0.35
CLK3-203ENST00000454830 SLC4A2P04920 1241 aa17.25■□□□□ 0.35
CLK3-203ENST00000454830 IP6K1Q92551 441 aa17.24■□□□□ 0.35
CLK3-203ENST00000454830 NBPF6Q5VWK0 638 aa17.24■□□□□ 0.35
CLK3-203ENST00000454830 NBPF4Q96M43 638 aa17.24■□□□□ 0.35
CLK3-203ENST00000454830 CHMP4BQ9H444 224 aaKnown RBP17.24■□□□□ 0.35
CLK3-203ENST00000454830 PEAK1Q9H792 1746 aa17.24■□□□□ 0.35
CLK3-203ENST00000454830 NBR1Q14596 966 aa17.23■□□□□ 0.35
CLK3-203ENST00000454830 STK31Q9BXU1 1019 aa17.23■□□□□ 0.35
CLK3-203ENST00000454830 ZBTB40Q9NUA8 1239 aa17.23■□□□□ 0.35
CLK3-203ENST00000454830 C8orf34Q49A92 452 aa17.22■□□□□ 0.35
CLK3-203ENST00000454830 LNPKQ9C0E8 428 aa17.22■□□□□ 0.35
CLK3-203ENST00000454830 CHD2O14647 1828 aaKnown RBP17.22■□□□□ 0.35
CLK3-203ENST00000454830 FMN2Q9NZ56 1722 aa17.22■□□□□ 0.35
CLK3-203ENST00000454830 CSB-PGBD3P0DP91 1061 aa17.22■□□□□ 0.35
CLK3-203ENST00000454830 PIK3C2AO00443 1686 aa17.21■□□□□ 0.35
CLK3-203ENST00000454830 NALCNQ8IZF0 1738 aa17.21■□□□□ 0.35
CLK3-203ENST00000454830 TMEM94Q12767 1356 aa17.21■□□□□ 0.35
CLK3-203ENST00000454830 APBB1O00213 710 aa17.2■□□□□ 0.34
CLK3-203ENST00000454830 ZNF530Q6P9A1 599 aaPredicted RBP17.2■□□□□ 0.34
CLK3-203ENST00000454830 CABLES1Q8TDN4 633 aa17.2■□□□□ 0.34
CLK3-203ENST00000454830 SLC4A3P48751 1232 aa17.2■□□□□ 0.34
CLK3-203ENST00000454830 ANKRD45Q5TZF3 282 aa17.2■□□□□ 0.34
CLK3-203ENST00000454830 DLG5Q8TDM6 1919 aa17.2■□□□□ 0.34
CLK3-203ENST00000454830 ARHGAP45Q92619 1136 aa17.2■□□□□ 0.34
CLK3-203ENST00000454830 EIF2S2P20042 333 aaKnown RBP17.19■□□□□ 0.34
CLK3-203ENST00000454830 TEFQ10587 303 aa17.19■□□□□ 0.34
CLK3-203ENST00000454830 NLRP2Q9NX02 1062 aa17.19■□□□□ 0.34
CLK3-203ENST00000454830 ANKRD24Q8TF21 1146 aa17.19■□□□□ 0.34
CLK3-203ENST00000454830 UPF2Q9HAU5 1272 aaKnown RBP17.19■□□□□ 0.34
CLK3-203ENST00000454830 F6X3S4 739 aa17.18■□□□□ 0.34
CLK3-203ENST00000454830 ZBTB7BO15156 539 aaPredicted RBP17.18■□□□□ 0.34
CLK3-203ENST00000454830 C1orf141Q5JVX7 400 aa17.18■□□□□ 0.34
CLK3-203ENST00000454830 MPRIPQ6WCQ1 1025 aa17.18■□□□□ 0.34
CLK3-203ENST00000454830 IL17REQ8NFR9 667 aa17.18■□□□□ 0.34
CLK3-203ENST00000454830 ZNF142P52746 1687 aaPredicted RBP17.18■□□□□ 0.34
CLK3-203ENST00000454830 FKBP5Q13451 457 aaPredicted RBP17.17■□□□□ 0.34
CLK3-203ENST00000454830 DDRGK1Q96HY6 314 aa17.17■□□□□ 0.34
CLK3-203ENST00000454830 KDRP35968 1356 aa17.17■□□□□ 0.34
CLK3-203ENST00000454830 HDAC1Q13547 482 aaPredicted RBP17.17■□□□□ 0.34
CLK3-203ENST00000454830 TAF7Q15545 349 aaPredicted RBP17.17■□□□□ 0.34
CLK3-203ENST00000454830 PLEKHO1Q53GL0 409 aaPredicted RBP17.16■□□□□ 0.34
CLK3-203ENST00000454830 MAP3K5Q99683 1374 aa17.16■□□□□ 0.34
CLK3-203ENST00000454830 G2E3Q7L622 706 aa17.16■□□□□ 0.34
CLK3-203ENST00000454830 CADPS2Q86UW7 1296 aa17.16■□□□□ 0.34
CLK3-203ENST00000454830 BRPF1P55201 1214 aaPredicted RBP17.15■□□□□ 0.34
CLK3-203ENST00000454830 CHRNA2Q15822 529 aa17.15■□□□□ 0.34
CLK3-203ENST00000454830 LGR6Q9HBX8 967 aa17.15■□□□□ 0.34
CLK3-203ENST00000454830 ARHGEF25Q86VW2 580 aa17.15■□□□□ 0.34
CLK3-203ENST00000454830 KIF24Q5T7B8 1368 aa17.14■□□□□ 0.33
CLK3-203ENST00000454830 CCDC30Q5VVM6 783 aa17.14■□□□□ 0.33
CLK3-203ENST00000454830 CRB1P82279 1406 aa17.13■□□□□ 0.33
CLK3-203ENST00000454830 ABCC4O15439 1325 aa17.13■□□□□ 0.33
CLK3-203ENST00000454830 HTATSF1O43719 755 aaKnown RBP17.13■□□□□ 0.33
CLK3-203ENST00000454830 SEC24BO95487 1268 aa17.13■□□□□ 0.33
CLK3-203ENST00000454830 HDGFL1Q5TGJ6 251 aa17.13■□□□□ 0.33
CLK3-203ENST00000454830 AXIN2Q9Y2T1 843 aa17.13■□□□□ 0.33
CLK3-203ENST00000454830 C1orf167Q5SNV9 1468 aa17.13■□□□□ 0.33
CLK3-203ENST00000454830 RTL1A6NKG5 1358 aa17.12■□□□□ 0.33
CLK3-203ENST00000454830 RAPGEF4Q8WZA2 1011 aa17.12■□□□□ 0.33
CLK3-203ENST00000454830 KIAA0232Q92628 1395 aa17.12■□□□□ 0.33
CLK3-203ENST00000454830 MSH6P52701 1360 aa17.12■□□□□ 0.33
CLK3-203ENST00000454830 MFAP1P55081 439 aaKnown RBP17.12■□□□□ 0.33
CLK3-203ENST00000454830 CHD1LQ86WJ1 897 aa17.11■□□□□ 0.33
CLK3-203ENST00000454830 SMC5Q8IY18 1101 aa17.11■□□□□ 0.33
CLK3-203ENST00000454830 MEIS3Q99687 375 aa17.11■□□□□ 0.33
CLK3-203ENST00000454830 NPHP3Q7Z494 1330 aa17.1■□□□□ 0.33
CLK3-203ENST00000454830 BTBD11A6QL63 1104 aa17.1■□□□□ 0.33
CLK3-203ENST00000454830 PTPRCP08575 1304 aa17.1■□□□□ 0.33
CLK3-203ENST00000454830 FLIIQ13045 1269 aa17.09■□□□□ 0.33
CLK3-203ENST00000454830 GCC1Q96CN9 775 aa17.08■□□□□ 0.33
CLK3-203ENST00000454830 ANXA1P04083 346 aa17.08■□□□□ 0.32
CLK3-203ENST00000454830 RTL5Q5HYW3 569 aaPredicted RBP17.08■□□□□ 0.32
CLK3-203ENST00000454830 KCNQ3O43525 872 aa17.08■□□□□ 0.32
CLK3-203ENST00000454830 AMOTQ4VCS5 1084 aa17.08■□□□□ 0.32
CLK3-203ENST00000454830 NUCB1Q02818 461 aa17.07■□□□□ 0.32
CLK3-203ENST00000454830 INTS3Q68E01 1043 aaKnown RBP17.07■□□□□ 0.32
CLK3-203ENST00000454830 AKAP4Q5JQC9 854 aa17.07■□□□□ 0.32
CLK3-203ENST00000454830 SIRT2Q8IXJ6 389 aa17.06■□□□□ 0.32
CLK3-203ENST00000454830 RGPD1P0DJD0 1748 aa17.05■□□□□ 0.32
CLK3-203ENST00000454830 ZNF335Q9H4Z2 1342 aaPredicted RBP17.05■□□□□ 0.32
CLK3-203ENST00000454830 TATP17735 454 aaPredicted RBP17.05■□□□□ 0.32
CLK3-203ENST00000454830 CCT4P50991 539 aaKnown RBP17.05■□□□□ 0.32
CLK3-203ENST00000454830 PHAXQ9H814 394 aaKnown RBP17.04■□□□□ 0.32
CLK3-203ENST00000454830 LTN1O94822 1766 aa17.04■□□□□ 0.32
CLK3-203ENST00000454830 PRDM11Q9NQV5 511 aa17.04■□□□□ 0.32
CLK3-203ENST00000454830 USP19O94966 1318 aa17.03■□□□□ 0.32
CLK3-203ENST00000454830 RNMTO43148 476 aaKnown RBP17.03■□□□□ 0.32
CLK3-203ENST00000454830 HMMRO75330 724 aa17.03■□□□□ 0.32
CLK3-203ENST00000454830 ERBB3P21860 1342 aa17.03■□□□□ 0.32
CLK3-203ENST00000454830 SMARCA5O60264 1052 aaPredicted RBP17.03■□□□□ 0.32
CLK3-203ENST00000454830 MST1RQ04912 1400 aa17.02■□□□□ 0.32
CLK3-203ENST00000454830 CHPF2Q9P2E5 772 aa17.02■□□□□ 0.32
CLK3-203ENST00000454830 NFAT5O94916 1531 aa17.02■□□□□ 0.32
CLK3-203ENST00000454830 KDM4FA0A1W2PPD8 638 aa17.02■□□□□ 0.31
CLK3-203ENST00000454830 RPAP2Q8IXW5 612 aaPredicted RBP17.02■□□□□ 0.31
CLK3-203ENST00000454830 CEP85Q6P2H3 762 aa17.01■□□□□ 0.31
CLK3-203ENST00000454830 GNAI2P04899 355 aa17.01■□□□□ 0.31
CLK3-203ENST00000454830 ANKRD44Q8N8A2 993 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms