RNA–Protein interactions for RNA: ENST00000452979.5

HERC3-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 3

Gene HERC3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-207ENST00000452979 DOT1LQ8TEK3 1739 aa16.47■□□□□ 0.23
HERC3-207ENST00000452979 NSD2O96028 1365 aa16.46■□□□□ 0.23
HERC3-207ENST00000452979 TONSLQ96HA7 1378 aa16.46■□□□□ 0.23
HERC3-207ENST00000452979 ST20-MTHFSA0A0A6YYL1 179 aa16.45■□□□□ 0.22
HERC3-207ENST00000452979 ZCRB1Q8TBF4 217 aaKnown RBP16.45■□□□□ 0.22
HERC3-207ENST00000452979 FBLN1P23142 703 aa16.44■□□□□ 0.22
HERC3-207ENST00000452979 POLD1P28340 1107 aa16.44■□□□□ 0.22
HERC3-207ENST00000452979 AMPHP49418 695 aa16.44■□□□□ 0.22
HERC3-207ENST00000452979 TFCP2L1Q9NZI6 479 aa16.44■□□□□ 0.22
HERC3-207ENST00000452979 GPR162Q16538 588 aa16.43■□□□□ 0.22
HERC3-207ENST00000452979 SYTL4Q96C24 671 aaPredicted RBP16.43■□□□□ 0.22
HERC3-207ENST00000452979 MEGF6O75095 1541 aa16.43■□□□□ 0.22
HERC3-207ENST00000452979 CGNL1Q0VF96 1302 aa16.43■□□□□ 0.22
HERC3-207ENST00000452979 RTL1A6NKG5 1358 aa16.42■□□□□ 0.22
HERC3-207ENST00000452979 KCNQ4P56696 695 aa16.42■□□□□ 0.22
HERC3-207ENST00000452979 FYB1O15117 783 aa16.41■□□□□ 0.22
HERC3-207ENST00000452979 NBPF6Q5VWK0 638 aa16.41■□□□□ 0.22
HERC3-207ENST00000452979 NBPF4Q96M43 638 aa16.41■□□□□ 0.22
HERC3-207ENST00000452979 PCGF6Q9BYE7 350 aa16.41■□□□□ 0.22
HERC3-207ENST00000452979 C1QTNF8P60827 252 aa16.4■□□□□ 0.22
HERC3-207ENST00000452979 CCNL1Q9UK58 526 aaPredicted RBP16.39■□□□□ 0.21
HERC3-207ENST00000452979 USP47Q96K76 1375 aa16.38■□□□□ 0.21
HERC3-207ENST00000452979 GOLGB1Q14789 3259 aaKnown RBP16.37■□□□□ 0.21
HERC3-207ENST00000452979 RRS1Q15050 365 aaKnown RBP16.37■□□□□ 0.21
HERC3-207ENST00000452979 COL23A1Q86Y22 540 aaPredicted RBP16.37■□□□□ 0.21
HERC3-207ENST00000452979 KLHL34Q8N239 644 aa16.37■□□□□ 0.21
HERC3-207ENST00000452979 NLGN2Q8NFZ4 835 aa16.37■□□□□ 0.21
HERC3-207ENST00000452979 C5P01031 1676 aa16.37■□□□□ 0.21
HERC3-207ENST00000452979 HMGB2P26583 209 aaKnown RBP16.36■□□□□ 0.21
HERC3-207ENST00000452979 RAPGEF4Q8WZA2 1011 aa16.36■□□□□ 0.21
HERC3-207ENST00000452979 GGNBP2Q9H3C7 697 aa16.36■□□□□ 0.21
HERC3-207ENST00000452979 INSRP06213 1382 aa16.36■□□□□ 0.21
HERC3-207ENST00000452979 KIF24Q5T7B8 1368 aa16.36■□□□□ 0.21
HERC3-207ENST00000452979 SMG6Q86US8 1419 aaKnown RBP16.36■□□□□ 0.21
HERC3-207ENST00000452979 TAF1LQ8IZX4 1826 aa16.35■□□□□ 0.21
HERC3-207ENST00000452979 TATP17735 454 aaPredicted RBP16.35■□□□□ 0.21
HERC3-207ENST00000452979 TMF1P82094 1093 aa16.35■□□□□ 0.21
HERC3-207ENST00000452979 KIF20BQ96Q89 1820 aa16.34■□□□□ 0.21
HERC3-207ENST00000452979 GRIN3BO60391 1043 aa16.34■□□□□ 0.21
HERC3-207ENST00000452979 HSP90AB2PQ58FF8 381 aa16.34■□□□□ 0.21
HERC3-207ENST00000452979 USHBP1Q8N6Y0 703 aa16.34■□□□□ 0.21
HERC3-207ENST00000452979 SENP3-EIF4A1A0A087X0R7 540 aa16.33■□□□□ 0.2
HERC3-207ENST00000452979 PCDH11XQ9BZA7 1347 aa16.33■□□□□ 0.2
HERC3-207ENST00000452979 PCDH11YQ9BZA8 1340 aa16.33■□□□□ 0.2
HERC3-207ENST00000452979 ITGB4P16144 1822 aa16.33■□□□□ 0.2
HERC3-207ENST00000452979 MSH5O43196 834 aa16.32■□□□□ 0.2
HERC3-207ENST00000452979 YBX3P16989 372 aaKnown RBP eCLIP16.32■□□□□ 0.2
HERC3-207ENST00000452979 FLT4P35916 1363 aa16.32■□□□□ 0.2
HERC3-207ENST00000452979 PELP1Q8IZL8 1130 aaKnown RBP16.32■□□□□ 0.2
HERC3-207ENST00000452979 FLAD1Q8NFF5 587 aa16.32■□□□□ 0.2
HERC3-207ENST00000452979 CD2APQ9Y5K6 639 aa16.31■□□□□ 0.2
HERC3-207ENST00000452979 CYP27B1O15528 508 aa16.3■□□□□ 0.2
HERC3-207ENST00000452979 GIGYF1O75420 1035 aaPredicted RBP16.3■□□□□ 0.2
HERC3-207ENST00000452979 CDCA8Q53HL2 280 aa16.3■□□□□ 0.2
HERC3-207ENST00000452979 MPRIPQ6WCQ1 1025 aa16.3■□□□□ 0.2
HERC3-207ENST00000452979 PKD1L3Q7Z443 1732 aa16.3■□□□□ 0.2
HERC3-207ENST00000452979 TOGARAM1Q9Y4F4 1720 aa16.3■□□□□ 0.2
HERC3-207ENST00000452979 PALLDQ8WX93 1383 aa16.29■□□□□ 0.2
HERC3-207ENST00000452979 CARD14Q9BXL6 1004 aa16.29■□□□□ 0.2
HERC3-207ENST00000452979 NCAPD2Q15021 1401 aa16.28■□□□□ 0.2
HERC3-207ENST00000452979 C4BP0C0L5 1744 aa16.28■□□□□ 0.2
HERC3-207ENST00000452979 NKX1-1Q15270 411 aaPredicted RBP16.28■□□□□ 0.2
HERC3-207ENST00000452979 SMARCC1Q92922 1105 aaPredicted RBP16.28■□□□□ 0.2
HERC3-207ENST00000452979 UBR3Q6ZT12 1888 aa16.27■□□□□ 0.2
HERC3-207ENST00000452979 MSL1Q68DK7 614 aa16.27■□□□□ 0.2
HERC3-207ENST00000452979 ANKRD26Q9UPS8 1709 aa16.27■□□□□ 0.19
HERC3-207ENST00000452979 MAP2P11137 1827 aaKnown RBP16.26■□□□□ 0.19
HERC3-207ENST00000452979 PIGBQ92521 554 aa16.25■□□□□ 0.19
HERC3-207ENST00000452979 EMILIN1Q9Y6C2 1016 aa16.25■□□□□ 0.19
HERC3-207ENST00000452979 WASHC2AQ641Q2 1341 aa16.24■□□□□ 0.19
HERC3-207ENST00000452979 AMIGO3Q86WK7 504 aa16.24■□□□□ 0.19
HERC3-207ENST00000452979 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.24■□□□□ 0.19
HERC3-207ENST00000452979 AK7Q96M32 723 aa16.23■□□□□ 0.19
HERC3-207ENST00000452979 SPG7Q9UQ90 795 aa16.23■□□□□ 0.19
HERC3-207ENST00000452979 NSD3Q9BZ95 1437 aa16.22■□□□□ 0.19
HERC3-207ENST00000452979 ATP10DQ9P241 1426 aa16.21■□□□□ 0.19
HERC3-207ENST00000452979 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.21■□□□□ 0.19
HERC3-207ENST00000452979 SSFA2P28290 1259 aa16.21■□□□□ 0.19
HERC3-207ENST00000452979 LOC102724428A0A0B4J2F2 783 aa16.2■□□□□ 0.18
HERC3-207ENST00000452979 SIK1P57059 783 aa16.2■□□□□ 0.18
HERC3-207ENST00000452979 EYA1Q99502 592 aa16.2■□□□□ 0.18
HERC3-207ENST00000452979 ADCY9O60503 1353 aa16.2■□□□□ 0.18
HERC3-207ENST00000452979 LINC00116Q8NCU8 138 aa16.19■□□□□ 0.18
HERC3-207ENST00000452979 PPM1GO15355 546 aaPredicted RBP16.18■□□□□ 0.18
HERC3-207ENST00000452979 PHKG2P15735 406 aa16.18■□□□□ 0.18
HERC3-207ENST00000452979 SMIM5Q71RC9 77 aa16.18■□□□□ 0.18
HERC3-207ENST00000452979 IFNL2Q8IZJ0 200 aa16.18■□□□□ 0.18
HERC3-207ENST00000452979 TMOD3Q9NYL9 352 aa16.18■□□□□ 0.18
HERC3-207ENST00000452979 POLKQ9UBT6 870 aa16.18■□□□□ 0.18
HERC3-207ENST00000452979 PLEKHG2Q9H7P9 1386 aa16.17■□□□□ 0.18
HERC3-207ENST00000452979 PHF14O94880 888 aa16.17■□□□□ 0.18
HERC3-207ENST00000452979 ITPK1Q13572 414 aa16.17■□□□□ 0.18
HERC3-207ENST00000452979 GPBP1L1Q9HC44 474 aaPredicted RBP16.17■□□□□ 0.18
HERC3-207ENST00000452979 ASAP1Q9ULH1 1129 aa16.17■□□□□ 0.18
HERC3-207ENST00000452979 TIMELESSQ9UNS1 1208 aa16.17■□□□□ 0.18
HERC3-207ENST00000452979 ZNF831Q5JPB2 1677 aa16.17■□□□□ 0.18
HERC3-207ENST00000452979 IGSF1Q8N6C5 1336 aa16.17■□□□□ 0.18
HERC3-207ENST00000452979 ATG3Q9NT62 314 aa16.16■□□□□ 0.18
HERC3-207ENST00000452979 KIF13BQ9NQT8 1826 aa16.15■□□□□ 0.18
HERC3-207ENST00000452979 ATP6V1AP38606 617 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms