RNA–Protein interactions for RNA: ENST00000448549.1

TRA2A-203, Transcript of transformer 2 alpha homolog, humanhuman

TSL 4

Gene TRA2A, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-203ENST00000448549 PAPPAQ13219 1627 aa21.7■■□□□ 1.06
TRA2A-203ENST00000448549 ARXQ96QS3 562 aa21.7■■□□□ 1.06
TRA2A-203ENST00000448549 MEGF6O75095 1541 aa21.7■■□□□ 1.06
TRA2A-203ENST00000448549 CDCA8Q53HL2 280 aa21.69■■□□□ 1.06
TRA2A-203ENST00000448549 HSP90AB2PQ58FF8 381 aa21.68■■□□□ 1.06
TRA2A-203ENST00000448549 FAM208AQ9UK61 1670 aaKnown RBP21.68■■□□□ 1.06
TRA2A-203ENST00000448549 NSD2O96028 1365 aa21.67■■□□□ 1.06
TRA2A-203ENST00000448549 RAPGEF4Q8WZA2 1011 aa21.66■■□□□ 1.06
TRA2A-203ENST00000448549 CARD14Q9BXL6 1004 aa21.66■■□□□ 1.06
TRA2A-203ENST00000448549 TFCP2L1Q9NZI6 479 aa21.66■■□□□ 1.06
TRA2A-203ENST00000448549 SMG6Q86US8 1419 aaKnown RBP21.65■■□□□ 1.06
TRA2A-203ENST00000448549 CGNL1Q0VF96 1302 aa21.65■■□□□ 1.06
TRA2A-203ENST00000448549 PNPLA7Q6ZV29 1317 aa21.65■■□□□ 1.06
TRA2A-203ENST00000448549 INSRP06213 1382 aa21.64■■□□□ 1.06
TRA2A-203ENST00000448549 SLC16A10Q8TF71 515 aa21.64■■□□□ 1.05
TRA2A-203ENST00000448549 TATP17735 454 aaPredicted RBP21.63■■□□□ 1.05
TRA2A-203ENST00000448549 CCNL1Q9UK58 526 aaPredicted RBP21.63■■□□□ 1.05
TRA2A-203ENST00000448549 FLT4P35916 1363 aa21.61■■□□□ 1.05
TRA2A-203ENST00000448549 POLD1P28340 1107 aa21.6■■□□□ 1.05
TRA2A-203ENST00000448549 EMILIN1Q9Y6C2 1016 aa21.6■■□□□ 1.05
TRA2A-203ENST00000448549 MAP3K5Q99683 1374 aa21.6■■□□□ 1.05
TRA2A-203ENST00000448549 RGPD2P0DJD1 1756 aa21.59■■□□□ 1.05
TRA2A-203ENST00000448549 KLHL34Q8N239 644 aa21.59■■□□□ 1.05
TRA2A-203ENST00000448549 NSD3Q9BZ95 1437 aa21.59■■□□□ 1.05
TRA2A-203ENST00000448549 KIF24Q5T7B8 1368 aa21.59■■□□□ 1.05
TRA2A-203ENST00000448549 PCDH11XQ9BZA7 1347 aa21.58■■□□□ 1.05
TRA2A-203ENST00000448549 PCDH11YQ9BZA8 1340 aa21.58■■□□□ 1.05
TRA2A-203ENST00000448549 DOT1LQ8TEK3 1739 aa21.58■■□□□ 1.05
TRA2A-203ENST00000448549 TIMELESSQ9UNS1 1208 aa21.58■■□□□ 1.05
TRA2A-203ENST00000448549 KAT6BQ8WYB5 2073 aa21.58■■□□□ 1.05
TRA2A-203ENST00000448549 PPM1GO15355 546 aaPredicted RBP21.57■■□□□ 1.04
TRA2A-203ENST00000448549 SHANK3Q9BYB0 1731 aa21.57■■□□□ 1.04
TRA2A-203ENST00000448549 CYP27B1O15528 508 aa21.56■■□□□ 1.04
TRA2A-203ENST00000448549 MSH5O43196 834 aa21.56■■□□□ 1.04
TRA2A-203ENST00000448549 ZNF784Q8NCA9 323 aaPredicted RBP21.56■■□□□ 1.04
TRA2A-203ENST00000448549 GPR162Q16538 588 aa21.55■■□□□ 1.04
TRA2A-203ENST00000448549 MPRIPQ6WCQ1 1025 aa21.55■■□□□ 1.04
TRA2A-203ENST00000448549 COL23A1Q86Y22 540 aaPredicted RBP21.54■■□□□ 1.04
TRA2A-203ENST00000448549 PCGF6Q9BYE7 350 aa21.54■■□□□ 1.04
TRA2A-203ENST00000448549 UTRNP46939 3433 aa21.52■■□□□ 1.04
TRA2A-203ENST00000448549 POLR3GLQ9BT43 218 aa21.52■■□□□ 1.04
TRA2A-203ENST00000448549 LY75O60449 1722 aa21.52■■□□□ 1.03
TRA2A-203ENST00000448549 PALLDQ8WX93 1383 aa21.51■■□□□ 1.03
TRA2A-203ENST00000448549 WASHC2AQ641Q2 1341 aa21.51■■□□□ 1.03
TRA2A-203ENST00000448549 KIF20BQ96Q89 1820 aa21.5■■□□□ 1.03
TRA2A-203ENST00000448549 PELP1Q8IZL8 1130 aaKnown RBP21.5■■□□□ 1.03
TRA2A-203ENST00000448549 NLGN2Q8NFZ4 835 aa21.5■■□□□ 1.03
TRA2A-203ENST00000448549 MSL1Q68DK7 614 aa21.49■■□□□ 1.03
TRA2A-203ENST00000448549 EYA1Q99502 592 aa21.49■■□□□ 1.03
TRA2A-203ENST00000448549 QSER1Q2KHR3 1735 aa21.49■■□□□ 1.03
TRA2A-203ENST00000448549 PIGBQ92521 554 aa21.48■■□□□ 1.03
TRA2A-203ENST00000448549 POLKQ9UBT6 870 aa21.48■■□□□ 1.03
TRA2A-203ENST00000448549 SPG7Q9UQ90 795 aa21.48■■□□□ 1.03
TRA2A-203ENST00000448549 CLSPNQ9HAW4 1339 aa21.48■■□□□ 1.03
TRA2A-203ENST00000448549 NKX1-1Q15270 411 aaPredicted RBP21.47■■□□□ 1.03
TRA2A-203ENST00000448549 SMARCC1Q92922 1105 aaPredicted RBP21.47■■□□□ 1.03
TRA2A-203ENST00000448549 NCAPD2Q15021 1401 aa21.46■■□□□ 1.03
TRA2A-203ENST00000448549 HMGB2P26583 209 aaKnown RBP21.46■■□□□ 1.03
TRA2A-203ENST00000448549 TNNT2P45379 298 aaPredicted RBP21.46■■□□□ 1.03
TRA2A-203ENST00000448549 FLAD1Q8NFF5 587 aa21.45■■□□□ 1.02
TRA2A-203ENST00000448549 TUBGCP6Q96RT7 1819 aa21.45■■□□□ 1.02
TRA2A-203ENST00000448549 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.44■■□□□ 1.029e-14■■■■■ 28.6
TRA2A-203ENST00000448549 COL24A1Q17RW2 1714 aa21.43■■□□□ 1.02
TRA2A-203ENST00000448549 EIF4A2Q14240 407 aaKnown RBP21.42■■□□□ 1.02
TRA2A-203ENST00000448549 AMIGO3Q86WK7 504 aa21.42■■□□□ 1.02
TRA2A-203ENST00000448549 AK7Q96M32 723 aa21.42■■□□□ 1.02
TRA2A-203ENST00000448549 YBX3P16989 372 aaKnown RBP eCLIP21.41■■□□□ 1.021e-9■□□□□ 9.9
TRA2A-203ENST00000448549 SMIM5Q71RC9 77 aa21.41■■□□□ 1.02
TRA2A-203ENST00000448549 TMOD3Q9NYL9 352 aa21.41■■□□□ 1.02
TRA2A-203ENST00000448549 PHF14O94880 888 aa21.4■■□□□ 1.02
TRA2A-203ENST00000448549 HSPA5P11021 654 aaKnown RBP21.4■■□□□ 1.02
TRA2A-203ENST00000448549 PHKG2P15735 406 aa21.4■■□□□ 1.02
TRA2A-203ENST00000448549 EIF4G2P78344 907 aaKnown RBP eCLIP21.4■■□□□ 1.02
TRA2A-203ENST00000448549 IFNL2Q8IZJ0 200 aa21.4■■□□□ 1.02
TRA2A-203ENST00000448549 PKD1L3Q7Z443 1732 aa21.39■■□□□ 1.01
TRA2A-203ENST00000448549 TOGARAM1Q9Y4F4 1720 aa21.39■■□□□ 1.01
TRA2A-203ENST00000448549 LOC102724428A0A0B4J2F2 783 aa21.39■■□□□ 1.01
TRA2A-203ENST00000448549 SIK1P57059 783 aa21.39■■□□□ 1.01
TRA2A-203ENST00000448549 PANK3Q9H999 370 aa21.39■■□□□ 1.01
TRA2A-203ENST00000448549 ASAP1Q9ULH1 1129 aa21.39■■□□□ 1.01
TRA2A-203ENST00000448549 C5P01031 1676 aa21.39■■□□□ 1.01
TRA2A-203ENST00000448549 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.38■■□□□ 1.01
TRA2A-203ENST00000448549 LINC00116Q8NCU8 138 aa21.38■■□□□ 1.01
TRA2A-203ENST00000448549 ANKRD26Q9UPS8 1709 aa21.38■■□□□ 1.01
TRA2A-203ENST00000448549 GRIN3BO60391 1043 aa21.37■■□□□ 1.01
TRA2A-203ENST00000448549 CD2APQ9Y5K6 639 aa21.37■■□□□ 1.01
TRA2A-203ENST00000448549 ATP6V1AP38606 617 aa21.35■■□□□ 1.01
TRA2A-203ENST00000448549 ITPK1Q13572 414 aa21.35■■□□□ 1.01
TRA2A-203ENST00000448549 ATG3Q9NT62 314 aa21.35■■□□□ 1.01
TRA2A-203ENST00000448549 C4BP0C0L5 1744 aa21.35■■□□□ 1.01
TRA2A-203ENST00000448549 SSFA2P28290 1259 aa21.34■■□□□ 1.01
TRA2A-203ENST00000448549 C1QTNF8P60827 252 aa21.34■■□□□ 1.01
TRA2A-203ENST00000448549 IGSF1Q8N6C5 1336 aa21.33■■□□□ 1.01
TRA2A-203ENST00000448549 GNPATO15228 680 aa21.33■■□□□ 1.01
TRA2A-203ENST00000448549 ITGB4P16144 1822 aa21.32■■□□□ 1
TRA2A-203ENST00000448549 GOLGB1Q14789 3259 aaKnown RBP21.31■■□□□ 1
TRA2A-203ENST00000448549 CHD4Q14839 1912 aa21.31■■□□□ 1
TRA2A-203ENST00000448549 CCER1Q8TC90 406 aaPredicted RBP21.31■■□□□ 1
TRA2A-203ENST00000448549 MAP2P11137 1827 aaKnown RBP21.31■■□□□ 1
TRA2A-203ENST00000448549 TAF1LQ8IZX4 1826 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms