RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 SHANK3Q9BYB0 1731 aa17.43■□□□□ 0.38
PRPF40A-203ENST00000448428 RAPGEF4Q8WZA2 1011 aa17.42■□□□□ 0.38
PRPF40A-203ENST00000448428 PSDA5PKW4 1024 aaPredicted RBP17.41■□□□□ 0.38
PRPF40A-203ENST00000448428 TATP17735 454 aaPredicted RBP17.41■□□□□ 0.38
PRPF40A-203ENST00000448428 EYA1Q99502 592 aa17.41■□□□□ 0.38
PRPF40A-203ENST00000448428 NHSQ6T4R5 1651 aa17.41■□□□□ 0.38
PRPF40A-203ENST00000448428 EIF4A2Q14240 407 aaKnown RBP17.4■□□□□ 0.38
PRPF40A-203ENST00000448428 NUP188Q5SRE5 1749 aa17.4■□□□□ 0.38
PRPF40A-203ENST00000448428 RGPD3A6NKT7 1758 aaPredicted RBP17.39■□□□□ 0.37
PRPF40A-203ENST00000448428 RGPD4Q7Z3J3 1758 aa17.39■□□□□ 0.37
PRPF40A-203ENST00000448428 PROM2Q8N271 834 aa17.39■□□□□ 0.37
PRPF40A-203ENST00000448428 NCAPD2Q15021 1401 aa17.38■□□□□ 0.37
PRPF40A-203ENST00000448428 R3HDM1Q15032 1099 aaKnown RBP17.38■□□□□ 0.37
PRPF40A-203ENST00000448428 CC2D1BQ5T0F9 858 aaKnown RBP17.38■□□□□ 0.37
PRPF40A-203ENST00000448428 BTAF1O14981 1849 aa17.37■□□□□ 0.37
PRPF40A-203ENST00000448428 PRIM1P49642 420 aaKnown RBP17.35■□□□□ 0.37
PRPF40A-203ENST00000448428 NBPF14Q5TI25 921 aa17.35■□□□□ 0.37
PRPF40A-203ENST00000448428 CNGB1Q14028 1251 aaPredicted RBP17.34■□□□□ 0.37
PRPF40A-203ENST00000448428 TXNRD1Q16881 649 aa17.34■□□□□ 0.37
PRPF40A-203ENST00000448428 DOT1LQ8TEK3 1739 aa17.34■□□□□ 0.37
PRPF40A-203ENST00000448428 PKD1L3Q7Z443 1732 aa17.33■□□□□ 0.37
PRPF40A-203ENST00000448428 NPC1L1Q9UHC9 1359 aa17.33■□□□□ 0.36
PRPF40A-203ENST00000448428 PCDH11XQ9BZA7 1347 aa17.33■□□□□ 0.36
PRPF40A-203ENST00000448428 PCDH11YQ9BZA8 1340 aa17.33■□□□□ 0.36
PRPF40A-203ENST00000448428 CYP27B1O15528 508 aa17.33■□□□□ 0.36
PRPF40A-203ENST00000448428 MTHFSP49914 203 aa17.33■□□□□ 0.36
PRPF40A-203ENST00000448428 SYTL4Q96C24 671 aaPredicted RBP17.33■□□□□ 0.36
PRPF40A-203ENST00000448428 IGSF1Q8N6C5 1336 aa17.32■□□□□ 0.36
PRPF40A-203ENST00000448428 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.31■□□□□ 0.366e-9■■□□□ 13.5
PRPF40A-203ENST00000448428 SPG7Q9UQ90 795 aa17.31■□□□□ 0.36
PRPF40A-203ENST00000448428 IL13P35225 146 aa17.3■□□□□ 0.36
PRPF40A-203ENST00000448428 ANO8Q9HCE9 1232 aaPredicted RBP17.29■□□□□ 0.36
PRPF40A-203ENST00000448428 NKX1-1Q15270 411 aaPredicted RBP17.28■□□□□ 0.36
PRPF40A-203ENST00000448428 AEBP1Q8IUX7 1158 aa17.28■□□□□ 0.36
PRPF40A-203ENST00000448428 ITGB4P16144 1822 aa17.28■□□□□ 0.36
PRPF40A-203ENST00000448428 LRRC4BQ9NT99 713 aa17.27■□□□□ 0.36
PRPF40A-203ENST00000448428 SULT6B1Q6IMI4 303 aa17.26■□□□□ 0.35
PRPF40A-203ENST00000448428 TOGARAM1Q9Y4F4 1720 aa17.26■□□□□ 0.35
PRPF40A-203ENST00000448428 LY75O60449 1722 aa17.25■□□□□ 0.35
PRPF40A-203ENST00000448428 PHKG2P15735 406 aa17.25■□□□□ 0.35
PRPF40A-203ENST00000448428 MPRIPQ6WCQ1 1025 aa17.25■□□□□ 0.35
PRPF40A-203ENST00000448428 IFNL2Q8IZJ0 200 aa17.25■□□□□ 0.35
PRPF40A-203ENST00000448428 LRP5O75197 1615 aa17.25■□□□□ 0.35
PRPF40A-203ENST00000448428 KCNQ4P56696 695 aa17.24■□□□□ 0.35
PRPF40A-203ENST00000448428 SLC15A2Q16348 729 aa17.24■□□□□ 0.35
PRPF40A-203ENST00000448428 PLEKHO1Q53GL0 409 aaPredicted RBP17.24■□□□□ 0.35
PRPF40A-203ENST00000448428 STK32BQ9NY57 414 aa17.24■□□□□ 0.35
PRPF40A-203ENST00000448428 PLEKHG2Q9H7P9 1386 aa17.24■□□□□ 0.35
PRPF40A-203ENST00000448428 DIAPH1O60610 1272 aaKnown RBP17.23■□□□□ 0.35
PRPF40A-203ENST00000448428 SLC27A3Q5K4L6 730 aa17.23■□□□□ 0.35
PRPF40A-203ENST00000448428 KDRP35968 1356 aa17.23■□□□□ 0.35
PRPF40A-203ENST00000448428 AMOTQ4VCS5 1084 aa17.22■□□□□ 0.35
PRPF40A-203ENST00000448428 PDGFDQ9GZP0 370 aaPredicted RBP17.22■□□□□ 0.35
PRPF40A-203ENST00000448428 PAPPAQ13219 1627 aa17.21■□□□□ 0.35
PRPF40A-203ENST00000448428 PIGBQ92521 554 aa17.21■□□□□ 0.35
PRPF40A-203ENST00000448428 CASZ1Q86V15 1759 aa17.2■□□□□ 0.34
PRPF40A-203ENST00000448428 HMOX1P09601 288 aa17.2■□□□□ 0.34
PRPF40A-203ENST00000448428 ZNF530Q6P9A1 599 aaPredicted RBP17.2■□□□□ 0.34
PRPF40A-203ENST00000448428 COL3A1P02461 1466 aaPredicted RBP17.19■□□□□ 0.34
PRPF40A-203ENST00000448428 PPP2R1AP30153 589 aa17.19■□□□□ 0.34
PRPF40A-203ENST00000448428 ZNF827Q17R98 1081 aa17.19■□□□□ 0.34
PRPF40A-203ENST00000448428 AKT1S1Q96B36 256 aa17.19■□□□□ 0.34
PRPF40A-203ENST00000448428 CCNL1Q9UK58 526 aaPredicted RBP17.19■□□□□ 0.34
PRPF40A-203ENST00000448428 TMOD3Q9NYL9 352 aa17.18■□□□□ 0.34
PRPF40A-203ENST00000448428 PALLDQ8WX93 1383 aa17.17■□□□□ 0.34
PRPF40A-203ENST00000448428 HSP90AB1P08238 724 aaKnown RBP17.17■□□□□ 0.34
PRPF40A-203ENST00000448428 SMARCC1Q92922 1105 aaPredicted RBP17.17■□□□□ 0.34
PRPF40A-203ENST00000448428 DCAF5Q96JK2 942 aa17.17■□□□□ 0.34
PRPF40A-203ENST00000448428 SPON1Q9HCB6 807 aa17.17■□□□□ 0.34
PRPF40A-203ENST00000448428 ERVV-2B6SEH9 535 aa17.16■□□□□ 0.34
PRPF40A-203ENST00000448428 U2SURPO15042 1029 aaKnown RBP17.16■□□□□ 0.34
PRPF40A-203ENST00000448428 C1orf141Q5JVX7 400 aa17.16■□□□□ 0.34
PRPF40A-203ENST00000448428 SRCAPQ6ZRS2 3230 aa17.15■□□□□ 0.34
PRPF40A-203ENST00000448428 TAF1LQ8IZX4 1826 aa17.15■□□□□ 0.34
PRPF40A-203ENST00000448428 ZBTB7AO95365 584 aa17.15■□□□□ 0.34
PRPF40A-203ENST00000448428 DDX10Q13206 875 aaKnown RBP17.15■□□□□ 0.34
PRPF40A-203ENST00000448428 CFAP53Q96M91 514 aa17.15■□□□□ 0.34
PRPF40A-203ENST00000448428 ASAP1Q9ULH1 1129 aa17.15■□□□□ 0.34
PRPF40A-203ENST00000448428 KDM6AO15550 1401 aaPredicted RBP17.14■□□□□ 0.33
PRPF40A-203ENST00000448428 TUBGCP6Q96RT7 1819 aa17.14■□□□□ 0.33
PRPF40A-203ENST00000448428 C5P01031 1676 aa17.13■□□□□ 0.33
PRPF40A-203ENST00000448428 QSER1Q2KHR3 1735 aa17.13■□□□□ 0.33
PRPF40A-203ENST00000448428 SCN11AQ9UI33 1791 aa17.13■□□□□ 0.33
PRPF40A-203ENST00000448428 ZEB1P37275 1124 aaPredicted RBP17.13■□□□□ 0.33
PRPF40A-203ENST00000448428 CABP4P57796 275 aa17.13■□□□□ 0.33
PRPF40A-203ENST00000448428 MTHFSDQ2M296 383 aaKnown RBP17.13■□□□□ 0.33
PRPF40A-203ENST00000448428 ATG3Q9NT62 314 aa17.13■□□□□ 0.33
PRPF40A-203ENST00000448428 TFCP2L1Q9NZI6 479 aa17.13■□□□□ 0.33
PRPF40A-203ENST00000448428 ATF5Q9Y2D1 282 aaPredicted RBP17.13■□□□□ 0.33
PRPF40A-203ENST00000448428 VIRMAQ69YN4 1812 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-203ENST00000448428 AKAP4Q5JQC9 854 aa17.12■□□□□ 0.33
PRPF40A-203ENST00000448428 LOC102724428A0A0B4J2F2 783 aa17.11■□□□□ 0.33
PRPF40A-203ENST00000448428 SIK1P57059 783 aa17.11■□□□□ 0.33
PRPF40A-203ENST00000448428 NFATC2IPQ8NCF5 419 aa17.11■□□□□ 0.33
PRPF40A-203ENST00000448428 LGR6Q9HBX8 967 aa17.11■□□□□ 0.33
PRPF40A-203ENST00000448428 PNPLA7Q6ZV29 1317 aa17.11■□□□□ 0.33
PRPF40A-203ENST00000448428 PTGER2P43116 358 aa17.1■□□□□ 0.33
PRPF40A-203ENST00000448428 MTFR1LQ9H019 292 aa17.1■□□□□ 0.33
PRPF40A-203ENST00000448428 NUDCQ9Y266 331 aa17.1■□□□□ 0.33
PRPF40A-203ENST00000448428 HMGB2P26583 209 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms