RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 DOT1LQ8TEK3 1739 aa20.5■□□□□ 0.87
HMGN1-208ENST00000443046 NEUROD1Q13562 356 aa20.5■□□□□ 0.87
HMGN1-208ENST00000443046 TERF2IPQ9NYB0 399 aa20.5■□□□□ 0.87
HMGN1-208ENST00000443046 KLHL34Q8N239 644 aa20.49■□□□□ 0.87
HMGN1-208ENST00000443046 YBX3P16989 372 aaKnown RBP eCLIP20.48■□□□□ 0.87
HMGN1-208ENST00000443046 SYTL4Q96C24 671 aaPredicted RBP20.47■□□□□ 0.87
HMGN1-208ENST00000443046 LTV1Q96GA3 475 aaPredicted RBP20.47■□□□□ 0.87
HMGN1-208ENST00000443046 CARD11Q9BXL7 1154 aa20.47■□□□□ 0.87
HMGN1-208ENST00000443046 RGPD2P0DJD1 1756 aa20.46■□□□□ 0.87
HMGN1-208ENST00000443046 HOXC9P31274 260 aa20.46■□□□□ 0.87
HMGN1-208ENST00000443046 PELP1Q8IZL8 1130 aaKnown RBP20.46■□□□□ 0.87
HMGN1-208ENST00000443046 ZCRB1Q8TBF4 217 aaKnown RBP20.46■□□□□ 0.87
HMGN1-208ENST00000443046 MAP3K19Q56UN5 1328 aa20.46■□□□□ 0.87
HMGN1-208ENST00000443046 MEGF6O75095 1541 aa20.45■□□□□ 0.86
HMGN1-208ENST00000443046 GRIN3BO60391 1043 aa20.45■□□□□ 0.86
HMGN1-208ENST00000443046 COL23A1Q86Y22 540 aaPredicted RBP20.45■□□□□ 0.86
HMGN1-208ENST00000443046 CCNL1Q9UK58 526 aaPredicted RBP20.44■□□□□ 0.86
HMGN1-208ENST00000443046 IFFO2Q5TF58 517 aa20.43■□□□□ 0.86
HMGN1-208ENST00000443046 FBLN1P23142 703 aa20.42■□□□□ 0.86
HMGN1-208ENST00000443046 COG3Q96JB2 828 aa20.41■□□□□ 0.86
HMGN1-208ENST00000443046 CGNL1Q0VF96 1302 aa20.4■□□□□ 0.86
HMGN1-208ENST00000443046 TESK2Q96S53 571 aa20.4■□□□□ 0.86
HMGN1-208ENST00000443046 RTL1A6NKG5 1358 aa20.39■□□□□ 0.85
HMGN1-208ENST00000443046 USP47Q96K76 1375 aa20.39■□□□□ 0.85
HMGN1-208ENST00000443046 AMPHP49418 695 aa20.39■□□□□ 0.85
HMGN1-208ENST00000443046 NBPF6Q5VWK0 638 aa20.39■□□□□ 0.85
HMGN1-208ENST00000443046 NBPF4Q96M43 638 aa20.39■□□□□ 0.85
HMGN1-208ENST00000443046 CD2APQ9Y5K6 639 aa20.38■□□□□ 0.85
HMGN1-208ENST00000443046 TAF1LQ8IZX4 1826 aa20.38■□□□□ 0.85
HMGN1-208ENST00000443046 C5P01031 1676 aa20.38■□□□□ 0.85
HMGN1-208ENST00000443046 ATP10DQ9P241 1426 aa20.37■□□□□ 0.85
HMGN1-208ENST00000443046 MSH5O43196 834 aa20.36■□□□□ 0.85
HMGN1-208ENST00000443046 ADCY9O60503 1353 aa20.35■□□□□ 0.85
HMGN1-208ENST00000443046 MSL1Q68DK7 614 aa20.35■□□□□ 0.85
HMGN1-208ENST00000443046 FLAD1Q8NFF5 587 aa20.34■□□□□ 0.85
HMGN1-208ENST00000443046 HMGB2P26583 209 aaKnown RBP20.33■□□□□ 0.85
HMGN1-208ENST00000443046 FYB1O15117 783 aa20.32■□□□□ 0.84
HMGN1-208ENST00000443046 RRS1Q15050 365 aaKnown RBP20.32■□□□□ 0.84
HMGN1-208ENST00000443046 USHBP1Q8N6Y0 703 aa20.32■□□□□ 0.84
HMGN1-208ENST00000443046 RAPGEF4Q8WZA2 1011 aa20.32■□□□□ 0.84
HMGN1-208ENST00000443046 ST20-MTHFSA0A0A6YYL1 179 aa20.31■□□□□ 0.84
HMGN1-208ENST00000443046 PALLDQ8WX93 1383 aa20.31■□□□□ 0.84
HMGN1-208ENST00000443046 TOGARAM1Q9Y4F4 1720 aa20.3■□□□□ 0.84
HMGN1-208ENST00000443046 PCDH11XQ9BZA7 1347 aa20.3■□□□□ 0.84
HMGN1-208ENST00000443046 PCDH11YQ9BZA8 1340 aa20.3■□□□□ 0.84
HMGN1-208ENST00000443046 SLC24A1O60721 1099 aa20.3■□□□□ 0.84
HMGN1-208ENST00000443046 AMIGO3Q86WK7 504 aa20.3■□□□□ 0.84
HMGN1-208ENST00000443046 C4BP0C0L5 1744 aa20.3■□□□□ 0.84
HMGN1-208ENST00000443046 TATP17735 454 aaPredicted RBP20.29■□□□□ 0.84
HMGN1-208ENST00000443046 GPBP1L1Q9HC44 474 aaPredicted RBP20.29■□□□□ 0.84
HMGN1-208ENST00000443046 INSRP06213 1382 aa20.29■□□□□ 0.84
HMGN1-208ENST00000443046 ITGB4P16144 1822 aa20.29■□□□□ 0.84
HMGN1-208ENST00000443046 UBR3Q6ZT12 1888 aa20.28■□□□□ 0.84
HMGN1-208ENST00000443046 SMG6Q86US8 1419 aaKnown RBP20.28■□□□□ 0.84
HMGN1-208ENST00000443046 CYP27B1O15528 508 aa20.28■□□□□ 0.84
HMGN1-208ENST00000443046 HSP90AB2PQ58FF8 381 aa20.28■□□□□ 0.84
HMGN1-208ENST00000443046 MPRIPQ6WCQ1 1025 aa20.27■□□□□ 0.84
HMGN1-208ENST00000443046 GGNBP2Q9H3C7 697 aa20.27■□□□□ 0.84
HMGN1-208ENST00000443046 KIF24Q5T7B8 1368 aa20.26■□□□□ 0.83
HMGN1-208ENST00000443046 MAP2P11137 1827 aaKnown RBP20.26■□□□□ 0.83
HMGN1-208ENST00000443046 HSPA6P17066 643 aa20.26■□□□□ 0.83
HMGN1-208ENST00000443046 PKD1L3Q7Z443 1732 aa20.25■□□□□ 0.83
HMGN1-208ENST00000443046 TONSLQ96HA7 1378 aa20.25■□□□□ 0.83
HMGN1-208ENST00000443046 SMARCC1Q92922 1105 aaPredicted RBP20.25■□□□□ 0.83
HMGN1-208ENST00000443046 FLT4P35916 1363 aa20.24■□□□□ 0.83
HMGN1-208ENST00000443046 NKX1-1Q15270 411 aaPredicted RBP20.24■□□□□ 0.83
HMGN1-208ENST00000443046 NCAPD2Q15021 1401 aa20.24■□□□□ 0.83
HMGN1-208ENST00000443046 IGSF1Q8N6C5 1336 aa20.24■□□□□ 0.83
HMGN1-208ENST00000443046 PIGBQ92521 554 aa20.23■□□□□ 0.83
HMGN1-208ENST00000443046 AK7Q96M32 723 aa20.23■□□□□ 0.83
HMGN1-208ENST00000443046 NSD3Q9BZ95 1437 aa20.22■□□□□ 0.83
HMGN1-208ENST00000443046 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.22■□□□□ 0.83
HMGN1-208ENST00000443046 SSFA2P28290 1259 aa20.21■□□□□ 0.83
HMGN1-208ENST00000443046 SMIM5Q71RC9 77 aa20.21■□□□□ 0.83
HMGN1-208ENST00000443046 KIF20BQ96Q89 1820 aa20.2■□□□□ 0.82
HMGN1-208ENST00000443046 ZNF526Q8TF50 670 aaPredicted RBP20.2■□□□□ 0.82
HMGN1-208ENST00000443046 CICQ96RK0 1608 aaPredicted RBP20.2■□□□□ 0.82
HMGN1-208ENST00000443046 KIF3CO14782 793 aa20.19■□□□□ 0.82
HMGN1-208ENST00000443046 LINC00116Q8NCU8 138 aa20.19■□□□□ 0.82
HMGN1-208ENST00000443046 LOC102724428A0A0B4J2F2 783 aa20.18■□□□□ 0.82
HMGN1-208ENST00000443046 PHF14O94880 888 aa20.18■□□□□ 0.82
HMGN1-208ENST00000443046 SIK1P57059 783 aa20.18■□□□□ 0.82
HMGN1-208ENST00000443046 KIF13BQ9NQT8 1826 aa20.17■□□□□ 0.82
HMGN1-208ENST00000443046 TMF1P82094 1093 aa20.16■□□□□ 0.82
HMGN1-208ENST00000443046 KIAA1551Q9HCM1 1747 aa20.16■□□□□ 0.82
HMGN1-208ENST00000443046 ITPK1Q13572 414 aa20.15■□□□□ 0.82
HMGN1-208ENST00000443046 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.15■□□□□ 0.828e-8■■□□□ 13
HMGN1-208ENST00000443046 WWC3Q9ULE0 1092 aa20.15■□□□□ 0.82
HMGN1-208ENST00000443046 EMILIN1Q9Y6C2 1016 aa20.15■□□□□ 0.82
HMGN1-208ENST00000443046 ANKRD26Q9UPS8 1709 aa20.15■□□□□ 0.82
HMGN1-208ENST00000443046 CARD14Q9BXL6 1004 aa20.14■□□□□ 0.81
HMGN1-208ENST00000443046 SPG7Q9UQ90 795 aa20.14■□□□□ 0.81
HMGN1-208ENST00000443046 ASAP1Q9ULH1 1129 aa20.13■□□□□ 0.81
HMGN1-208ENST00000443046 PXDNLA1KZ92 1463 aa20.12■□□□□ 0.81
HMGN1-208ENST00000443046 WASHC2AQ641Q2 1341 aa20.12■□□□□ 0.81
HMGN1-208ENST00000443046 PCNTO95613 3336 aa20.12■□□□□ 0.81
HMGN1-208ENST00000443046 GNPATO15228 680 aa20.11■□□□□ 0.81
HMGN1-208ENST00000443046 EYA1Q99502 592 aa20.11■□□□□ 0.81
HMGN1-208ENST00000443046 TMOD3Q9NYL9 352 aa20.11■□□□□ 0.81
HMGN1-208ENST00000443046 MMP10P09238 476 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms