RNA–Protein interactions for RNA: ENST00000439717.2

HSPG2-206, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 637 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-206ENST00000439717 TRIM37O94972 964 aa15.93■□□□□ 0.14
HSPG2-206ENST00000439717 RALBP1Q15311 655 aa15.93■□□□□ 0.14
HSPG2-206ENST00000439717 CFAP53Q96M91 514 aa15.93■□□□□ 0.14
HSPG2-206ENST00000439717 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.93■□□□□ 0.14
HSPG2-206ENST00000439717 DDX54Q8TDD1 881 aaKnown RBP15.92■□□□□ 0.14
HSPG2-206ENST00000439717 SPG7Q9UQ90 795 aa15.92■□□□□ 0.14
HSPG2-206ENST00000439717 COL3A1P02461 1466 aaPredicted RBP15.91■□□□□ 0.14
HSPG2-206ENST00000439717 BAG6P46379 1132 aa15.91■□□□□ 0.14
HSPG2-206ENST00000439717 PCDH11XQ9BZA7 1347 aa15.91■□□□□ 0.14
HSPG2-206ENST00000439717 PCDH11YQ9BZA8 1340 aa15.91■□□□□ 0.14
HSPG2-206ENST00000439717 KDRP35968 1356 aa15.9■□□□□ 0.14
HSPG2-206ENST00000439717 SULT6B1Q6IMI4 303 aa15.9■□□□□ 0.14
HSPG2-206ENST00000439717 BCL11BQ9C0K0 894 aaPredicted RBP15.9■□□□□ 0.14
HSPG2-206ENST00000439717 TNS1Q9HBL0 1735 aaKnown RBP15.9■□□□□ 0.14
HSPG2-206ENST00000439717 PKD1L3Q7Z443 1732 aa15.89■□□□□ 0.13
HSPG2-206ENST00000439717 SHANK3Q9BYB0 1731 aa15.89■□□□□ 0.13
HSPG2-206ENST00000439717 APBA3O96018 575 aa15.88■□□□□ 0.13
HSPG2-206ENST00000439717 DEFB132Q7Z7B7 95 aa15.88■□□□□ 0.13
HSPG2-206ENST00000439717 AEBP1Q8IUX7 1158 aa15.88■□□□□ 0.13
HSPG2-206ENST00000439717 SBF2Q86WG5 1849 aa15.88■□□□□ 0.13
HSPG2-206ENST00000439717 AMOTQ4VCS5 1084 aa15.87■□□□□ 0.13
HSPG2-206ENST00000439717 PLEKHO1Q53GL0 409 aaPredicted RBP15.87■□□□□ 0.13
HSPG2-206ENST00000439717 NUDCQ9Y266 331 aa15.87■□□□□ 0.13
HSPG2-206ENST00000439717 CYP27B1O15528 508 aa15.86■□□□□ 0.13
HSPG2-206ENST00000439717 NHSQ6T4R5 1651 aa15.86■□□□□ 0.13
HSPG2-206ENST00000439717 U2SURPO15042 1029 aaKnown RBP15.85■□□□□ 0.13
HSPG2-206ENST00000439717 PLSCR1O15162 318 aa15.85■□□□□ 0.13
HSPG2-206ENST00000439717 EN1Q05925 392 aaPredicted RBP15.85■□□□□ 0.13
HSPG2-206ENST00000439717 NKX1-1Q15270 411 aaPredicted RBP15.85■□□□□ 0.13
HSPG2-206ENST00000439717 IFNL2Q8IZJ0 200 aa15.85■□□□□ 0.13
HSPG2-206ENST00000439717 ACSBG1Q96GR2 724 aa15.85■□□□□ 0.13
HSPG2-206ENST00000439717 KCNQ2O43526 872 aa15.84■□□□□ 0.13
HSPG2-206ENST00000439717 HMOX1P09601 288 aa15.84■□□□□ 0.13
HSPG2-206ENST00000439717 CAMKK2Q96RR4 588 aa15.84■□□□□ 0.13
HSPG2-206ENST00000439717 MYBBP1AQ9BQG0 1328 aaKnown RBP15.84■□□□□ 0.13
HSPG2-206ENST00000439717 PHKG2P15735 406 aa15.83■□□□□ 0.12
HSPG2-206ENST00000439717 PTF1AQ7RTS3 328 aa15.83■□□□□ 0.12
HSPG2-206ENST00000439717 PRKRIP1Q9H875 184 aaPredicted RBP15.83■□□□□ 0.12
HSPG2-206ENST00000439717 HSP90AB1P08238 724 aaKnown RBP15.82■□□□□ 0.12
HSPG2-206ENST00000439717 PRIM1P49642 420 aaKnown RBP15.82■□□□□ 0.12
HSPG2-206ENST00000439717 EZH2Q15910 746 aaKnown RBP15.82■□□□□ 0.12
HSPG2-206ENST00000439717 RGPD3A6NKT7 1758 aaPredicted RBP15.82■□□□□ 0.12
HSPG2-206ENST00000439717 RGPD4Q7Z3J3 1758 aa15.82■□□□□ 0.12
HSPG2-206ENST00000439717 ZNF530Q6P9A1 599 aaPredicted RBP15.81■□□□□ 0.12
HSPG2-206ENST00000439717 DOT1LQ8TEK3 1739 aa15.81■□□□□ 0.12
HSPG2-206ENST00000439717 C1orf141Q5JVX7 400 aa15.8■□□□□ 0.12
HSPG2-206ENST00000439717 SYTL4Q96C24 671 aaPredicted RBP15.8■□□□□ 0.12
HSPG2-206ENST00000439717 FCHSD2O94868 740 aa15.79■□□□□ 0.12
HSPG2-206ENST00000439717 U2AF1L5P0DN76 240 aaPredicted RBP15.79■□□□□ 0.12
HSPG2-206ENST00000439717 U2AF1Q01081 240 aaKnown RBP eCLIP15.79■□□□□ 0.12
HSPG2-206ENST00000439717 DCAF5Q96JK2 942 aa15.79■□□□□ 0.12
HSPG2-206ENST00000439717 RSPH6AQ9H0K4 717 aa15.78■□□□□ 0.12
HSPG2-206ENST00000439717 BTAF1O14981 1849 aa15.78■□□□□ 0.12
HSPG2-206ENST00000439717 RREB1Q92766 1687 aa15.77■□□□□ 0.12
HSPG2-206ENST00000439717 AKAP4Q5JQC9 854 aa15.77■□□□□ 0.12
HSPG2-206ENST00000439717 ERVV-2B6SEH9 535 aa15.76■□□□□ 0.11
HSPG2-206ENST00000439717 PRKAR2BP31323 418 aa15.76■□□□□ 0.11
HSPG2-206ENST00000439717 MTHFSDQ2M296 383 aaKnown RBP15.76■□□□□ 0.11
HSPG2-206ENST00000439717 MPRIPQ6WCQ1 1025 aa15.76■□□□□ 0.11
HSPG2-206ENST00000439717 GAS2L2Q8NHY3 880 aa15.76■□□□□ 0.11
HSPG2-206ENST00000439717 TOGARAM1Q9Y4F4 1720 aa15.76■□□□□ 0.11
HSPG2-206ENST00000439717 TXNRD1Q16881 649 aa15.75■□□□□ 0.11
HSPG2-206ENST00000439717 PROM2Q8N271 834 aa15.75■□□□□ 0.11
HSPG2-206ENST00000439717 PNNQ9H307 717 aaKnown RBP15.75■□□□□ 0.11
HSPG2-206ENST00000439717 TMOD3Q9NYL9 352 aa15.75■□□□□ 0.11
HSPG2-206ENST00000439717 KAT6BQ8WYB5 2073 aa15.74■□□□□ 0.11
HSPG2-206ENST00000439717 KDM6AO15550 1401 aaPredicted RBP15.74■□□□□ 0.11
HSPG2-206ENST00000439717 ANP32CO43423 234 aa15.73■□□□□ 0.11
HSPG2-206ENST00000439717 SLC27A3Q5K4L6 730 aa15.73■□□□□ 0.11
HSPG2-206ENST00000439717 NBPF14Q5TI25 921 aa15.73■□□□□ 0.11
HSPG2-206ENST00000439717 PIGBQ92521 554 aa15.73■□□□□ 0.11
HSPG2-206ENST00000439717 SMARCC1Q92922 1105 aaPredicted RBP15.73■□□□□ 0.11
HSPG2-206ENST00000439717 NUP188Q5SRE5 1749 aa15.73■□□□□ 0.11
HSPG2-206ENST00000439717 ITGB4P16144 1822 aa15.73■□□□□ 0.11
HSPG2-206ENST00000439717 NEFMP07197 916 aa15.72■□□□□ 0.11
HSPG2-206ENST00000439717 PHACTR3Q96KR7 559 aa15.72■□□□□ 0.11
HSPG2-206ENST00000439717 HMGB2P26583 209 aaKnown RBP15.71■□□□□ 0.11
HSPG2-206ENST00000439717 CABP4P57796 275 aa15.71■□□□□ 0.11
HSPG2-206ENST00000439717 MAP3K5Q99683 1374 aa15.71■□□□□ 0.11
HSPG2-206ENST00000439717 GNAT3A8MTJ3 354 aa15.7■□□□□ 0.1
HSPG2-206ENST00000439717 RNMTO43148 476 aaKnown RBP15.7■□□□□ 0.1
HSPG2-206ENST00000439717 PLEKHF1Q96S99 279 aa15.7■□□□□ 0.1
HSPG2-206ENST00000439717 LY75O60449 1722 aa15.69■□□□□ 0.1
HSPG2-206ENST00000439717 WDR43Q15061 677 aaKnown RBP eCLIP15.69■□□□□ 0.1
HSPG2-206ENST00000439717 LGR6Q9HBX8 967 aa15.69■□□□□ 0.1
HSPG2-206ENST00000439717 PALLDQ8WX93 1383 aa15.69■□□□□ 0.1
HSPG2-206ENST00000439717 ADAMTS7Q9UKP4 1686 aa15.69■□□□□ 0.1
HSPG2-206ENST00000439717 SCN11AQ9UI33 1791 aa15.69■□□□□ 0.1
HSPG2-206ENST00000439717 NFATC2IPQ8NCF5 419 aa15.68■□□□□ 0.1
HSPG2-206ENST00000439717 SLC52A2Q9HAB3 445 aa15.68■□□□□ 0.1
HSPG2-206ENST00000439717 LRRC4BQ9NT99 713 aa15.68■□□□□ 0.1
HSPG2-206ENST00000439717 CCNL1Q9UK58 526 aaPredicted RBP15.68■□□□□ 0.1
HSPG2-206ENST00000439717 MRC1P22897 1456 aa15.67■□□□□ 0.1
HSPG2-206ENST00000439717 HTATSF1O43719 755 aaKnown RBP15.67■□□□□ 0.1
HSPG2-206ENST00000439717 ATG3Q9NT62 314 aa15.67■□□□□ 0.1
HSPG2-206ENST00000439717 STK32BQ9NY57 414 aa15.67■□□□□ 0.1
HSPG2-206ENST00000439717 ASAP1Q9ULH1 1129 aa15.67■□□□□ 0.1
HSPG2-206ENST00000439717 MAPK8IP3Q9UPT6 1336 aa15.67■□□□□ 0.1
HSPG2-206ENST00000439717 R3HDM1Q15032 1099 aaKnown RBP15.66■□□□□ 0.1
HSPG2-206ENST00000439717 PAPPAQ13219 1627 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms