RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 ZNF827Q17R98 1081 aa22.67■■□□□ 1.22
TTC28-202ENST00000431039 QSER1Q2KHR3 1735 aa22.66■■□□□ 1.22
TTC28-202ENST00000431039 LRRC4BQ9NT99 713 aa22.66■■□□□ 1.22
TTC28-202ENST00000431039 HOXC9P31274 260 aa22.65■■□□□ 1.22
TTC28-202ENST00000431039 AMPHP49418 695 aa22.65■■□□□ 1.22
TTC28-202ENST00000431039 SGIP1Q9BQI5 828 aa22.65■■□□□ 1.22
TTC28-202ENST00000431039 CHD4Q14839 1912 aa22.65■■□□□ 1.22
TTC28-202ENST00000431039 SYT17Q9BSW7 474 aa22.64■■□□□ 1.21
TTC28-202ENST00000431039 KIF20BQ96Q89 1820 aa22.64■■□□□ 1.21
TTC28-202ENST00000431039 LY75O60449 1722 aa22.63■■□□□ 1.21
TTC28-202ENST00000431039 SYTL4Q96C24 671 aaPredicted RBP22.63■■□□□ 1.21
TTC28-202ENST00000431039 ANKRD36BQ8N2N9 1353 aa22.63■■□□□ 1.21
TTC28-202ENST00000431039 MEGF6O75095 1541 aa22.62■■□□□ 1.21
TTC28-202ENST00000431039 DIEXFQ68CQ4 756 aaKnown RBP22.61■■□□□ 1.21
TTC28-202ENST00000431039 ARXQ96QS3 562 aa22.61■■□□□ 1.21
TTC28-202ENST00000431039 UTRNP46939 3433 aa22.6■■□□□ 1.21
TTC28-202ENST00000431039 KCNQ4P56696 695 aa22.6■■□□□ 1.21
TTC28-202ENST00000431039 RRS1Q15050 365 aaKnown RBP22.6■■□□□ 1.21
TTC28-202ENST00000431039 PANK3Q9H999 370 aa22.6■■□□□ 1.21
TTC28-202ENST00000431039 PRIM1P49642 420 aaKnown RBP22.59■■□□□ 1.21
TTC28-202ENST00000431039 AKT1S1Q96B36 256 aa22.59■■□□□ 1.21
TTC28-202ENST00000431039 SLC27A3Q5K4L6 730 aa22.58■■□□□ 1.21
TTC28-202ENST00000431039 GGNBP2Q9H3C7 697 aa22.58■■□□□ 1.21
TTC28-202ENST00000431039 RTL1A6NKG5 1358 aa22.58■■□□□ 1.21
TTC28-202ENST00000431039 COL24A1Q17RW2 1714 aa22.57■■□□□ 1.2
TTC28-202ENST00000431039 USHBP1Q8N6Y0 703 aa22.57■■□□□ 1.2
TTC28-202ENST00000431039 ZCRB1Q8TBF4 217 aaKnown RBP22.57■■□□□ 1.2
TTC28-202ENST00000431039 NSD2O96028 1365 aa22.57■■□□□ 1.2
TTC28-202ENST00000431039 FYB1O15117 783 aa22.55■■□□□ 1.2
TTC28-202ENST00000431039 PER1O15534 1290 aaPredicted RBP22.55■■□□□ 1.2
TTC28-202ENST00000431039 NBPF6Q5VWK0 638 aa22.55■■□□□ 1.2
TTC28-202ENST00000431039 KLHL34Q8N239 644 aa22.55■■□□□ 1.2
TTC28-202ENST00000431039 NBPF4Q96M43 638 aa22.55■■□□□ 1.2
TTC28-202ENST00000431039 PNPLA7Q6ZV29 1317 aa22.55■■□□□ 1.2
TTC28-202ENST00000431039 SMG6Q86US8 1419 aaKnown RBP22.54■■□□□ 1.2
TTC28-202ENST00000431039 MAP3K5Q99683 1374 aa22.53■■□□□ 1.2
TTC28-202ENST00000431039 TFCP2L1Q9NZI6 479 aa22.53■■□□□ 1.2
TTC28-202ENST00000431039 CARD14Q9BXL6 1004 aa22.52■■□□□ 1.2
TTC28-202ENST00000431039 ZNF784Q8NCA9 323 aaPredicted RBP22.51■■□□□ 1.19
TTC28-202ENST00000431039 SLC16A10Q8TF71 515 aa22.51■■□□□ 1.19
TTC28-202ENST00000431039 CCNL1Q9UK58 526 aaPredicted RBP22.51■■□□□ 1.19
TTC28-202ENST00000431039 C5P01031 1676 aa22.5■■□□□ 1.19
TTC28-202ENST00000431039 POLD1P28340 1107 aa22.5■■□□□ 1.19
TTC28-202ENST00000431039 RAPGEF4Q8WZA2 1011 aa22.5■■□□□ 1.19
TTC28-202ENST00000431039 KNSTRNQ9Y448 316 aa22.49■■□□□ 1.19
TTC28-202ENST00000431039 ITGB4P16144 1822 aa22.48■■□□□ 1.19
TTC28-202ENST00000431039 TAF1LQ8IZX4 1826 aa22.48■■□□□ 1.19
TTC28-202ENST00000431039 TATP17735 454 aaPredicted RBP22.48■■□□□ 1.19
TTC28-202ENST00000431039 HSP90AB2PQ58FF8 381 aa22.48■■□□□ 1.19
TTC28-202ENST00000431039 GPR162Q16538 588 aa22.47■■□□□ 1.19
TTC28-202ENST00000431039 TOGARAM1Q9Y4F4 1720 aa22.47■■□□□ 1.19
TTC28-202ENST00000431039 CGNL1Q0VF96 1302 aa22.47■■□□□ 1.19
TTC28-202ENST00000431039 INSRP06213 1382 aa22.47■■□□□ 1.19
TTC28-202ENST00000431039 FLT4P35916 1363 aa22.47■■□□□ 1.19
TTC28-202ENST00000431039 MSH5O43196 834 aa22.46■■□□□ 1.19
TTC28-202ENST00000431039 PELP1Q8IZL8 1130 aaKnown RBP22.46■■□□□ 1.19
TTC28-202ENST00000431039 MAP2P11137 1827 aaKnown RBP22.44■■□□□ 1.18
TTC28-202ENST00000431039 AMER1Q5JTC6 1135 aaPredicted RBP22.44■■□□□ 1.18
TTC28-202ENST00000431039 PKD1L3Q7Z443 1732 aa22.44■■□□□ 1.18
TTC28-202ENST00000431039 NSD3Q9BZ95 1437 aa22.44■■□□□ 1.18
TTC28-202ENST00000431039 PCDH11XQ9BZA7 1347 aa22.44■■□□□ 1.18
TTC28-202ENST00000431039 PCDH11YQ9BZA8 1340 aa22.44■■□□□ 1.18
TTC28-202ENST00000431039 NPC1L1Q9UHC9 1359 aa22.44■■□□□ 1.18
TTC28-202ENST00000431039 ANP32CO43423 234 aa22.42■■□□□ 1.18
TTC28-202ENST00000431039 COL23A1Q86Y22 540 aaPredicted RBP22.42■■□□□ 1.18
TTC28-202ENST00000431039 NLGN2Q8NFZ4 835 aa22.42■■□□□ 1.18
TTC28-202ENST00000431039 EMILIN1Q9Y6C2 1016 aa22.42■■□□□ 1.18
TTC28-202ENST00000431039 ANKRD26Q9UPS8 1709 aa22.42■■□□□ 1.18
TTC28-202ENST00000431039 KIF24Q5T7B8 1368 aa22.41■■□□□ 1.18
TTC28-202ENST00000431039 GOLGB1Q14789 3259 aaKnown RBP22.41■■□□□ 1.18
TTC28-202ENST00000431039 MSL1Q68DK7 614 aa22.4■■□□□ 1.18
TTC28-202ENST00000431039 MPRIPQ6WCQ1 1025 aa22.4■■□□□ 1.18
TTC28-202ENST00000431039 PALLDQ8WX93 1383 aa22.39■■□□□ 1.18
TTC28-202ENST00000431039 PPM1GO15355 546 aaPredicted RBP22.39■■□□□ 1.17
TTC28-202ENST00000431039 C4BP0C0L5 1744 aa22.38■■□□□ 1.17
TTC28-202ENST00000431039 CYP27B1O15528 508 aa22.38■■□□□ 1.17
TTC28-202ENST00000431039 PRKRIP1Q9H875 184 aaPredicted RBP22.37■■□□□ 1.17
TTC28-202ENST00000431039 RALBP1Q15311 655 aa22.36■■□□□ 1.17
TTC28-202ENST00000431039 UBR3Q6ZT12 1888 aa22.36■■□□□ 1.17
TTC28-202ENST00000431039 CC2D1BQ5T0F9 858 aaKnown RBP22.35■■□□□ 1.17
TTC28-202ENST00000431039 NCAPD2Q15021 1401 aa22.33■■□□□ 1.17
TTC28-202ENST00000431039 MIER1Q8N108 512 aa22.33■■□□□ 1.17
TTC28-202ENST00000431039 YBX3P16989 372 aaKnown RBP eCLIP22.32■■□□□ 1.16
TTC28-202ENST00000431039 C1QTNF8P60827 252 aa22.3■■□□□ 1.16
TTC28-202ENST00000431039 PIGBQ92521 554 aa22.3■■□□□ 1.16
TTC28-202ENST00000431039 SMARCC1Q92922 1105 aaPredicted RBP22.3■■□□□ 1.16
TTC28-202ENST00000431039 AK7Q96M32 723 aa22.3■■□□□ 1.16
TTC28-202ENST00000431039 SPG7Q9UQ90 795 aa22.3■■□□□ 1.16
TTC28-202ENST00000431039 SENP3-EIF4A1A0A087X0R7 540 aa22.29■■□□□ 1.16
TTC28-202ENST00000431039 CNGB1Q14028 1251 aaPredicted RBP22.29■■□□□ 1.16
TTC28-202ENST00000431039 MORC1Q86VD1 984 aa22.29■■□□□ 1.16
TTC28-202ENST00000431039 FLAD1Q8NFF5 587 aa22.29■■□□□ 1.16
TTC28-202ENST00000431039 EYA1Q99502 592 aa22.29■■□□□ 1.16
TTC28-202ENST00000431039 PHF14O94880 888 aa22.28■■□□□ 1.16
TTC28-202ENST00000431039 SMIM5Q71RC9 77 aa22.28■■□□□ 1.16
TTC28-202ENST00000431039 AMIGO3Q86WK7 504 aa22.28■■□□□ 1.16
TTC28-202ENST00000431039 GRIN3BO60391 1043 aa22.26■■□□□ 1.15
TTC28-202ENST00000431039 HMGB2P26583 209 aaKnown RBP22.26■■□□□ 1.15
TTC28-202ENST00000431039 TNNT2P45379 298 aaPredicted RBP22.26■■□□□ 1.15
TTC28-202ENST00000431039 NKX1-1Q15270 411 aaPredicted RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms