RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 SOCS7O14512 581 aa19.45■□□□□ 0.7
SGCE-204ENST00000428696 FAM208AQ9UK61 1670 aaKnown RBP19.45■□□□□ 0.7
SGCE-204ENST00000428696 MEGF6O75095 1541 aa19.45■□□□□ 0.7
SGCE-204ENST00000428696 TRIM37O94972 964 aa19.44■□□□□ 0.7
SGCE-204ENST00000428696 SF3B2Q13435 895 aaKnown RBP19.44■□□□□ 0.7
SGCE-204ENST00000428696 PLEKHO1Q53GL0 409 aaPredicted RBP19.44■□□□□ 0.7
SGCE-204ENST00000428696 ACSBG1Q96GR2 724 aa19.44■□□□□ 0.7
SGCE-204ENST00000428696 BRWD3Q6RI45 1802 aa19.44■□□□□ 0.7
SGCE-204ENST00000428696 THSD7AQ9UPZ6 1657 aa19.44■□□□□ 0.7
SGCE-204ENST00000428696 UPF1Q92900 1129 aaKnown RBP eCLIP19.42■□□□□ 0.7
SGCE-204ENST00000428696 WDR43Q15061 677 aaKnown RBP eCLIP19.42■□□□□ 0.7
SGCE-204ENST00000428696 SYTL4Q96C24 671 aaPredicted RBP19.42■□□□□ 0.7
SGCE-204ENST00000428696 OVOS2A0A0G2JMS6 1433 aa19.41■□□□□ 0.7
SGCE-204ENST00000428696 TNS2Q63HR2 1409 aa19.41■□□□□ 0.7
SGCE-204ENST00000428696 DIEXFQ68CQ4 756 aaKnown RBP19.4■□□□□ 0.7
SGCE-204ENST00000428696 ZNF530Q6P9A1 599 aaPredicted RBP19.4■□□□□ 0.7
SGCE-204ENST00000428696 PCDH11XQ9BZA7 1347 aa19.4■□□□□ 0.7
SGCE-204ENST00000428696 PCDH11YQ9BZA8 1340 aa19.4■□□□□ 0.7
SGCE-204ENST00000428696 COL3A1P02461 1466 aaPredicted RBP19.4■□□□□ 0.7
SGCE-204ENST00000428696 NEFMP07197 916 aa19.39■□□□□ 0.69
SGCE-204ENST00000428696 PRKAR2BP31323 418 aa19.39■□□□□ 0.69
SGCE-204ENST00000428696 AMOTQ4VCS5 1084 aa19.39■□□□□ 0.69
SGCE-204ENST00000428696 C1orf141Q5JVX7 400 aa19.39■□□□□ 0.69
SGCE-204ENST00000428696 PARP4Q9UKK3 1724 aaKnown RBP19.38■□□□□ 0.69
SGCE-204ENST00000428696 LRRC37A3O60309 1634 aa19.38■□□□□ 0.69
SGCE-204ENST00000428696 CYP27B1O15528 508 aa19.38■□□□□ 0.69
SGCE-204ENST00000428696 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.38■□□□□ 0.692e-6■□□□□ 8.1
SGCE-204ENST00000428696 KCNQ2O43526 872 aa19.37■□□□□ 0.69
SGCE-204ENST00000428696 APBA3O96018 575 aa19.37■□□□□ 0.69
SGCE-204ENST00000428696 IFNL2Q8IZJ0 200 aa19.37■□□□□ 0.69
SGCE-204ENST00000428696 EP400Q96L91 3159 aa19.36■□□□□ 0.69
SGCE-204ENST00000428696 FCHSD2O94868 740 aa19.36■□□□□ 0.69
SGCE-204ENST00000428696 PRIM1P49642 420 aaKnown RBP19.36■□□□□ 0.69
SGCE-204ENST00000428696 CCDC184Q52MB2 194 aa19.36■□□□□ 0.69
SGCE-204ENST00000428696 MRS2Q9HD23 443 aa19.36■□□□□ 0.69
SGCE-204ENST00000428696 NCAPD2Q15021 1401 aa19.36■□□□□ 0.69
SGCE-204ENST00000428696 PHKG2P15735 406 aa19.35■□□□□ 0.69
SGCE-204ENST00000428696 PTF1AQ7RTS3 328 aa19.35■□□□□ 0.69
SGCE-204ENST00000428696 CCDC125Q86Z20 511 aa19.35■□□□□ 0.69
SGCE-204ENST00000428696 RSPH6AQ9H0K4 717 aa19.35■□□□□ 0.69
SGCE-204ENST00000428696 KDRP35968 1356 aa19.35■□□□□ 0.69
SGCE-204ENST00000428696 WNK3Q9BYP7 1800 aa19.35■□□□□ 0.69
SGCE-204ENST00000428696 MTHFSDQ2M296 383 aaKnown RBP19.34■□□□□ 0.69
SGCE-204ENST00000428696 PHACTR3Q96KR7 559 aa19.34■□□□□ 0.69
SGCE-204ENST00000428696 PNNQ9H307 717 aaKnown RBP19.34■□□□□ 0.69
SGCE-204ENST00000428696 MPRIPQ6WCQ1 1025 aa19.34■□□□□ 0.69
SGCE-204ENST00000428696 DEFB132Q7Z7B7 95 aa19.34■□□□□ 0.69
SGCE-204ENST00000428696 CCDC146Q8IYE0 955 aa19.33■□□□□ 0.68
SGCE-204ENST00000428696 BCL11BQ9C0K0 894 aaPredicted RBP19.33■□□□□ 0.68
SGCE-204ENST00000428696 ADAMTS8Q9UP79 889 aa19.32■□□□□ 0.68
SGCE-204ENST00000428696 MAPK8IP3Q9UPT6 1336 aa19.31■□□□□ 0.68
SGCE-204ENST00000428696 RGPD1P0DJD0 1748 aa19.31■□□□□ 0.68
SGCE-204ENST00000428696 HSP90AB1P08238 724 aaKnown RBP19.31■□□□□ 0.68
SGCE-204ENST00000428696 BAG6P46379 1132 aa19.31■□□□□ 0.68
SGCE-204ENST00000428696 EN1Q05925 392 aaPredicted RBP19.31■□□□□ 0.68
SGCE-204ENST00000428696 KAT6BQ8WYB5 2073 aa19.31■□□□□ 0.68
SGCE-204ENST00000428696 AKAP4Q5JQC9 854 aa19.3■□□□□ 0.68
SGCE-204ENST00000428696 GAS2L2Q8NHY3 880 aa19.3■□□□□ 0.68
SGCE-204ENST00000428696 DCAF5Q96JK2 942 aa19.29■□□□□ 0.68
SGCE-204ENST00000428696 CABP4P57796 275 aa19.28■□□□□ 0.68
SGCE-204ENST00000428696 NKX1-1Q15270 411 aaPredicted RBP19.27■□□□□ 0.68
SGCE-204ENST00000428696 RTF1Q92541 710 aaKnown RBP19.27■□□□□ 0.68
SGCE-204ENST00000428696 TMOD3Q9NYL9 352 aa19.27■□□□□ 0.68
SGCE-204ENST00000428696 GNAT3A8MTJ3 354 aa19.26■□□□□ 0.67
SGCE-204ENST00000428696 FAM9BQ8IZU0 186 aa19.26■□□□□ 0.67
SGCE-204ENST00000428696 LGR6Q9HBX8 967 aa19.26■□□□□ 0.67
SGCE-204ENST00000428696 SENP3-EIF4A1A0A087X0R7 540 aa19.25■□□□□ 0.67
SGCE-204ENST00000428696 NEUROD2Q15784 382 aa19.25■□□□□ 0.67
SGCE-204ENST00000428696 EZH2Q15910 746 aaKnown RBP19.25■□□□□ 0.67
SGCE-204ENST00000428696 MIER1Q8N108 512 aa19.25■□□□□ 0.67
SGCE-204ENST00000428696 PLEKHF1Q96S99 279 aa19.25■□□□□ 0.67
SGCE-204ENST00000428696 RRP7AQ9Y3A4 280 aaKnown RBP19.25■□□□□ 0.67
SGCE-204ENST00000428696 BCL9O00512 1426 aa19.24■□□□□ 0.67
SGCE-204ENST00000428696 NFATC2IPQ8NCF5 419 aa19.24■□□□□ 0.67
SGCE-204ENST00000428696 PNISRQ8TF01 805 aaKnown RBP19.24■□□□□ 0.67
SGCE-204ENST00000428696 PIGBQ92521 554 aa19.24■□□□□ 0.67
SGCE-204ENST00000428696 RUNDC1Q96C34 613 aa19.24■□□□□ 0.67
SGCE-204ENST00000428696 ERVV-2B6SEH9 535 aa19.23■□□□□ 0.67
SGCE-204ENST00000428696 RNMTO43148 476 aaKnown RBP19.23■□□□□ 0.67
SGCE-204ENST00000428696 PKD1L3Q7Z443 1732 aa19.22■□□□□ 0.67
SGCE-204ENST00000428696 MAP3K5Q99683 1374 aa19.22■□□□□ 0.67
SGCE-204ENST00000428696 PLEKHG2Q9H7P9 1386 aa19.22■□□□□ 0.67
SGCE-204ENST00000428696 DCTN1Q14203 1278 aa19.22■□□□□ 0.67
SGCE-204ENST00000428696 NFE2L2Q16236 605 aa19.22■□□□□ 0.67
SGCE-204ENST00000428696 MCM10Q7L590 875 aa19.22■□□□□ 0.67
SGCE-204ENST00000428696 SHANK3Q9BYB0 1731 aa19.21■□□□□ 0.67
SGCE-204ENST00000428696 RIPK4P57078 832 aa19.21■□□□□ 0.67
SGCE-204ENST00000428696 TEFQ10587 303 aa19.21■□□□□ 0.67
SGCE-204ENST00000428696 IL17REQ8NFR9 667 aa19.2■□□□□ 0.66
SGCE-204ENST00000428696 CAMKK2Q96RR4 588 aa19.2■□□□□ 0.66
SGCE-204ENST00000428696 PLSCR1O15162 318 aa19.19■□□□□ 0.66
SGCE-204ENST00000428696 KCNQ4P56696 695 aa19.19■□□□□ 0.66
SGCE-204ENST00000428696 ASAP1Q9ULH1 1129 aa19.19■□□□□ 0.66
SGCE-204ENST00000428696 TMPOP42166 694 aaKnown RBP19.18■□□□□ 0.66
SGCE-204ENST00000428696 KDM6AO15550 1401 aaPredicted RBP19.18■□□□□ 0.66
SGCE-204ENST00000428696 APAF1O14727 1248 aa19.17■□□□□ 0.66
SGCE-204ENST00000428696 TXNRD1Q16881 649 aa19.17■□□□□ 0.66
SGCE-204ENST00000428696 RBM42Q9BTD8 480 aaKnown RBP19.17■□□□□ 0.66
SGCE-204ENST00000428696 SLC52A2Q9HAB3 445 aa19.17■□□□□ 0.66
SGCE-204ENST00000428696 DOT1LQ8TEK3 1739 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms