RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 SPATA31A1Q5TZJ5 1347 aa17.71■□□□□ 0.42
PRPF39-202ENST00000424478 NFE2L2Q16236 605 aa17.71■□□□□ 0.42
PRPF39-202ENST00000424478 DDX54Q8TDD1 881 aaKnown RBP17.71■□□□□ 0.42
PRPF39-202ENST00000424478 TATP17735 454 aaPredicted RBP17.7■□□□□ 0.42
PRPF39-202ENST00000424478 ZNF530Q6P9A1 599 aaPredicted RBP17.7■□□□□ 0.42
PRPF39-202ENST00000424478 SPATA31A5Q5VU36 1347 aa17.69■□□□□ 0.42
PRPF39-202ENST00000424478 SPATA31A7Q8IWB4 1347 aa17.69■□□□□ 0.42
PRPF39-202ENST00000424478 NWD2Q9ULI1 1742 aa17.69■□□□□ 0.42
PRPF39-202ENST00000424478 IL2RBP14784 551 aa17.69■□□□□ 0.42
PRPF39-202ENST00000424478 NCAPD2Q15021 1401 aa17.69■□□□□ 0.42
PRPF39-202ENST00000424478 MPRIPQ6WCQ1 1025 aa17.69■□□□□ 0.42
PRPF39-202ENST00000424478 WWC1Q8IX03 1113 aa17.69■□□□□ 0.42
PRPF39-202ENST00000424478 FAM182BQ5T319 152 aa17.68■□□□□ 0.42
PRPF39-202ENST00000424478 LAS1LQ9Y4W2 734 aaKnown RBP17.68■□□□□ 0.42
PRPF39-202ENST00000424478 KAT6BQ8WYB5 2073 aa17.68■□□□□ 0.42
PRPF39-202ENST00000424478 PNNQ9H307 717 aaKnown RBP17.67■□□□□ 0.42
PRPF39-202ENST00000424478 QTRT2Q9H974 415 aaKnown RBP17.67■□□□□ 0.42
PRPF39-202ENST00000424478 LGR6Q9HBX8 967 aa17.67■□□□□ 0.42
PRPF39-202ENST00000424478 ZBED9Q6R2W3 1325 aa17.67■□□□□ 0.42
PRPF39-202ENST00000424478 CYP27B1O15528 508 aa17.67■□□□□ 0.42
PRPF39-202ENST00000424478 MIS18AQ9NYP9 233 aa17.66■□□□□ 0.42
PRPF39-202ENST00000424478 VPS72Q15906 364 aa17.66■□□□□ 0.42
PRPF39-202ENST00000424478 PLEKHO1Q53GL0 409 aaPredicted RBP17.66■□□□□ 0.42
PRPF39-202ENST00000424478 ZCRB1Q8TBF4 217 aaKnown RBP17.64■□□□□ 0.41
PRPF39-202ENST00000424478 TSR2Q969E8 191 aaKnown RBP17.64■□□□□ 0.41
PRPF39-202ENST00000424478 RGS17Q9UGC6 210 aaPredicted RBP17.64■□□□□ 0.41
PRPF39-202ENST00000424478 OVOS2A0A0G2JMS6 1433 aa17.63■□□□□ 0.41
PRPF39-202ENST00000424478 IL17REQ8NFR9 667 aa17.63■□□□□ 0.41
PRPF39-202ENST00000424478 GJD4Q96KN9 370 aaPredicted RBP17.63■□□□□ 0.41
PRPF39-202ENST00000424478 GAS2L2Q8NHY3 880 aa17.63■□□□□ 0.41
PRPF39-202ENST00000424478 GLI3P10071 1580 aa17.63■□□□□ 0.41
PRPF39-202ENST00000424478 ZNF521Q96K83 1311 aa17.62■□□□□ 0.41
PRPF39-202ENST00000424478 GNAT3A8MTJ3 354 aa17.62■□□□□ 0.41
PRPF39-202ENST00000424478 C1orf141Q5JVX7 400 aa17.62■□□□□ 0.41
PRPF39-202ENST00000424478 PHKG2P15735 406 aa17.61■□□□□ 0.41
PRPF39-202ENST00000424478 RTF1Q92541 710 aaKnown RBP17.61■□□□□ 0.41
PRPF39-202ENST00000424478 MAP3K5Q99683 1374 aa17.61■□□□□ 0.41
PRPF39-202ENST00000424478 TRPC5Q9UL62 973 aaPredicted RBP17.61■□□□□ 0.41
PRPF39-202ENST00000424478 SPG7Q9UQ90 795 aa17.61■□□□□ 0.41
PRPF39-202ENST00000424478 DISP2A7MBM2 1401 aa17.61■□□□□ 0.41
PRPF39-202ENST00000424478 PARP4Q9UKK3 1724 aaKnown RBP17.61■□□□□ 0.41
PRPF39-202ENST00000424478 SHANK3Q9BYB0 1731 aa17.6■□□□□ 0.41
PRPF39-202ENST00000424478 AMOTQ4VCS5 1084 aa17.6■□□□□ 0.41
PRPF39-202ENST00000424478 PHF23Q9BUL5 403 aaPredicted RBP17.6■□□□□ 0.41
PRPF39-202ENST00000424478 DDB1Q16531 1140 aa17.6■□□□□ 0.41
PRPF39-202ENST00000424478 EXOC5O00471 708 aa17.59■□□□□ 0.41
PRPF39-202ENST00000424478 POTEAQ6S8J7 498 aa17.59■□□□□ 0.41
PRPF39-202ENST00000424478 ATRNO75882 1429 aa17.59■□□□□ 0.41
PRPF39-202ENST00000424478 GOLGA2Q08379 1002 aa17.59■□□□□ 0.41
PRPF39-202ENST00000424478 WNK3Q9BYP7 1800 aa17.59■□□□□ 0.41
PRPF39-202ENST00000424478 AKAP4Q5JQC9 854 aa17.59■□□□□ 0.41
PRPF39-202ENST00000424478 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.58■□□□□ 0.41
PRPF39-202ENST00000424478 PKD1L3Q7Z443 1732 aa17.58■□□□□ 0.4
PRPF39-202ENST00000424478 KDM6AO15550 1401 aaPredicted RBP17.58■□□□□ 0.4
PRPF39-202ENST00000424478 IFNL2Q8IZJ0 200 aa17.58■□□□□ 0.4
PRPF39-202ENST00000424478 VIRMAQ69YN4 1812 aaKnown RBP17.58■□□□□ 0.4
PRPF39-202ENST00000424478 KRT24Q2M2I5 525 aa17.57■□□□□ 0.4
PRPF39-202ENST00000424478 MARCH10Q8NA82 808 aaPredicted RBP17.57■□□□□ 0.4
PRPF39-202ENST00000424478 ACSBG1Q96GR2 724 aa17.57■□□□□ 0.4
PRPF39-202ENST00000424478 PCDH11XQ9BZA7 1347 aa17.56■□□□□ 0.4
PRPF39-202ENST00000424478 PCDH11YQ9BZA8 1340 aa17.56■□□□□ 0.4
PRPF39-202ENST00000424478 LRRC37A3O60309 1634 aa17.56■□□□□ 0.4
PRPF39-202ENST00000424478 RNMTO43148 476 aaKnown RBP17.56■□□□□ 0.4
PRPF39-202ENST00000424478 SEPT12Q8IYM1 358 aa17.56■□□□□ 0.4
PRPF39-202ENST00000424478 ELL2O00472 640 aaPredicted RBP17.56■□□□□ 0.4
PRPF39-202ENST00000424478 BARGINQ6ZT62 677 aa17.56■□□□□ 0.4
PRPF39-202ENST00000424478 SYTL4Q96C24 671 aaPredicted RBP17.56■□□□□ 0.4
PRPF39-202ENST00000424478 THRAP3Q9Y2W1 955 aaKnown RBP17.56■□□□□ 0.4
PRPF39-202ENST00000424478 CCDC27Q2M243 656 aa17.55■□□□□ 0.4
PRPF39-202ENST00000424478 KCNQ3O43525 872 aa17.55■□□□□ 0.4
PRPF39-202ENST00000424478 NFATC2IPQ8NCF5 419 aa17.55■□□□□ 0.4
PRPF39-202ENST00000424478 SLFN5Q08AF3 891 aa17.54■□□□□ 0.4
PRPF39-202ENST00000424478 SLC39A6Q13433 755 aa17.54■□□□□ 0.4
PRPF39-202ENST00000424478 ZNF772Q68DY9 489 aaPredicted RBP17.54■□□□□ 0.4
PRPF39-202ENST00000424478 PTF1AQ7RTS3 328 aa17.54■□□□□ 0.4
PRPF39-202ENST00000424478 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.54■□□□□ 0.45e-7■■■■□ 22.8
PRPF39-202ENST00000424478 DUSP27Q5VZP5 1158 aa17.53■□□□□ 0.4
PRPF39-202ENST00000424478 MBIPQ9NS73 344 aa17.53■□□□□ 0.4
PRPF39-202ENST00000424478 TNS2Q63HR2 1409 aa17.53■□□□□ 0.4
PRPF39-202ENST00000424478 LMOD3Q0VAK6 560 aa17.53■□□□□ 0.4
PRPF39-202ENST00000424478 FANCIQ9NVI1 1328 aa17.53■□□□□ 0.4
PRPF39-202ENST00000424478 TEFQ10587 303 aa17.52■□□□□ 0.4
PRPF39-202ENST00000424478 PDE3BQ13370 1112 aa17.52■□□□□ 0.4
PRPF39-202ENST00000424478 WDR63Q8IWG1 891 aa17.52■□□□□ 0.39
PRPF39-202ENST00000424478 TCERG1O14776 1098 aaKnown RBP17.51■□□□□ 0.39
PRPF39-202ENST00000424478 KCNQ2O43526 872 aa17.51■□□□□ 0.39
PRPF39-202ENST00000424478 TOGARAM1Q9Y4F4 1720 aa17.51■□□□□ 0.39
PRPF39-202ENST00000424478 TSPYL4Q9UJ04 414 aa17.5■□□□□ 0.39
PRPF39-202ENST00000424478 CEMIPQ8WUJ3 1361 aa17.5■□□□□ 0.39
PRPF39-202ENST00000424478 EXOSC9Q06265 439 aaKnown RBP17.5■□□□□ 0.39
PRPF39-202ENST00000424478 TSPYL6Q8N831 410 aa17.5■□□□□ 0.39
PRPF39-202ENST00000424478 DCAF5Q96JK2 942 aa17.5■□□□□ 0.39
PRPF39-202ENST00000424478 BRWD3Q6RI45 1802 aa17.5■□□□□ 0.39
PRPF39-202ENST00000424478 SCN11AQ9UI33 1791 aa17.5■□□□□ 0.39
PRPF39-202ENST00000424478 E9PSI1 815 aa17.49■□□□□ 0.39
PRPF39-202ENST00000424478 RXRBP28702 533 aa17.49■□□□□ 0.39
PRPF39-202ENST00000424478 PRIM1P49642 420 aaKnown RBP17.49■□□□□ 0.39
PRPF39-202ENST00000424478 CABP4P57796 275 aa17.49■□□□□ 0.39
PRPF39-202ENST00000424478 RBM6P78332 1123 aaKnown RBP17.49■□□□□ 0.39
PRPF39-202ENST00000424478 THSD7AQ9UPZ6 1657 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms