RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 NBPF4Q96M43 638 aa16.03■□□□□ 0.16
SQSTM1-203ENST00000422245 ANKRD26Q9UPS8 1709 aa16.02■□□□□ 0.16
SQSTM1-203ENST00000422245 ZBTB7AO95365 584 aa16.02■□□□□ 0.16
SQSTM1-203ENST00000422245 SLC27A3Q5K4L6 730 aa16.02■□□□□ 0.16
SQSTM1-203ENST00000422245 RAPGEF4Q8WZA2 1011 aa16.02■□□□□ 0.16
SQSTM1-203ENST00000422245 PDGFDQ9GZP0 370 aaPredicted RBP16.02■□□□□ 0.16
SQSTM1-203ENST00000422245 HSP90AB2PQ58FF8 381 aa16.01■□□□□ 0.15
SQSTM1-203ENST00000422245 QSER1Q2KHR3 1735 aa16.01■□□□□ 0.15
SQSTM1-203ENST00000422245 USHBP1Q8N6Y0 703 aa16■□□□□ 0.15
SQSTM1-203ENST00000422245 SYTL4Q96C24 671 aaPredicted RBP16■□□□□ 0.15
SQSTM1-203ENST00000422245 MTFR1LQ9H019 292 aa16■□□□□ 0.15
SQSTM1-203ENST00000422245 NSD2O96028 1365 aa16■□□□□ 0.15
SQSTM1-203ENST00000422245 LY75O60449 1722 aa15.99■□□□□ 0.15
SQSTM1-203ENST00000422245 PCDH11XQ9BZA7 1347 aa15.99■□□□□ 0.15
SQSTM1-203ENST00000422245 PCDH11YQ9BZA8 1340 aa15.99■□□□□ 0.15
SQSTM1-203ENST00000422245 TATP17735 454 aaPredicted RBP15.99■□□□□ 0.15
SQSTM1-203ENST00000422245 PTGER2P43116 358 aa15.99■□□□□ 0.15
SQSTM1-203ENST00000422245 PRIM1P49642 420 aaKnown RBP15.99■□□□□ 0.15
SQSTM1-203ENST00000422245 EMILIN1Q9Y6C2 1016 aa15.99■□□□□ 0.15
SQSTM1-203ENST00000422245 DCAF8L1A6NGE4 600 aa15.98■□□□□ 0.15
SQSTM1-203ENST00000422245 EIF4G2P78344 907 aaKnown RBP eCLIP15.98■□□□□ 0.15
SQSTM1-203ENST00000422245 ZNF827Q17R98 1081 aa15.98■□□□□ 0.15
SQSTM1-203ENST00000422245 LRRC4BQ9NT99 713 aa15.98■□□□□ 0.15
SQSTM1-203ENST00000422245 NCAPD2Q15021 1401 aa15.97■□□□□ 0.15
SQSTM1-203ENST00000422245 CCER1Q8TC90 406 aaPredicted RBP15.97■□□□□ 0.15
SQSTM1-203ENST00000422245 ATF5Q9Y2D1 282 aaPredicted RBP15.97■□□□□ 0.15
SQSTM1-203ENST00000422245 AKT1S1Q96B36 256 aa15.96■□□□□ 0.15
SQSTM1-203ENST00000422245 PKD1L3Q7Z443 1732 aa15.96■□□□□ 0.15
SQSTM1-203ENST00000422245 SGIP1Q9BQI5 828 aa15.95■□□□□ 0.14
SQSTM1-203ENST00000422245 POLR3GLQ9BT43 218 aa15.95■□□□□ 0.14
SQSTM1-203ENST00000422245 MAP2P11137 1827 aaKnown RBP15.95■□□□□ 0.14
SQSTM1-203ENST00000422245 WASHC2AQ641Q2 1341 aa15.94■□□□□ 0.14
SQSTM1-203ENST00000422245 PPM1GO15355 546 aaPredicted RBP15.94■□□□□ 0.14
SQSTM1-203ENST00000422245 HSPA5P11021 654 aaKnown RBP15.94■□□□□ 0.14
SQSTM1-203ENST00000422245 TUBGCP6Q96RT7 1819 aa15.94■□□□□ 0.14
SQSTM1-203ENST00000422245 CCNL1Q9UK58 526 aaPredicted RBP15.93■□□□□ 0.14
SQSTM1-203ENST00000422245 MAP3K5Q99683 1374 aa15.92■□□□□ 0.14
SQSTM1-203ENST00000422245 COL24A1Q17RW2 1714 aa15.92■□□□□ 0.14
SQSTM1-203ENST00000422245 SLC16A10Q8TF71 515 aa15.92■□□□□ 0.14
SQSTM1-203ENST00000422245 TFCP2L1Q9NZI6 479 aa15.92■□□□□ 0.14
SQSTM1-203ENST00000422245 PNPLA7Q6ZV29 1317 aa15.92■□□□□ 0.14
SQSTM1-203ENST00000422245 PLEKHG2Q9H7P9 1386 aa15.91■□□□□ 0.14
SQSTM1-203ENST00000422245 CYP27B1O15528 508 aa15.91■□□□□ 0.14
SQSTM1-203ENST00000422245 HMGB2P26583 209 aaKnown RBP15.91■□□□□ 0.14
SQSTM1-203ENST00000422245 ARXQ96QS3 562 aa15.91■□□□□ 0.14
SQSTM1-203ENST00000422245 FHDC1Q9C0D6 1143 aaPredicted RBP15.91■□□□□ 0.14
SQSTM1-203ENST00000422245 POLKQ9UBT6 870 aa15.91■□□□□ 0.14
SQSTM1-203ENST00000422245 C5P01031 1676 aa15.9■□□□□ 0.14
SQSTM1-203ENST00000422245 YY1P25490 414 aa15.9■□□□□ 0.14
SQSTM1-203ENST00000422245 SYT17Q9BSW7 474 aa15.9■□□□□ 0.14
SQSTM1-203ENST00000422245 TOGARAM1Q9Y4F4 1720 aa15.9■□□□□ 0.14
SQSTM1-203ENST00000422245 ITGB4P16144 1822 aa15.89■□□□□ 0.13
SQSTM1-203ENST00000422245 PALLDQ8WX93 1383 aa15.89■□□□□ 0.13
SQSTM1-203ENST00000422245 KCNQ4P56696 695 aa15.89■□□□□ 0.13
SQSTM1-203ENST00000422245 EYA1Q99502 592 aa15.89■□□□□ 0.13
SQSTM1-203ENST00000422245 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.89■□□□□ 0.13
SQSTM1-203ENST00000422245 SPG7Q9UQ90 795 aa15.89■□□□□ 0.13
SQSTM1-203ENST00000422245 POLD1P28340 1107 aa15.88■□□□□ 0.13
SQSTM1-203ENST00000422245 PANK3Q9H999 370 aa15.88■□□□□ 0.13
SQSTM1-203ENST00000422245 TAF1LQ8IZX4 1826 aa15.87■□□□□ 0.13
SQSTM1-203ENST00000422245 TNNT2P45379 298 aaPredicted RBP15.87■□□□□ 0.13
SQSTM1-203ENST00000422245 NKX1-1Q15270 411 aaPredicted RBP15.87■□□□□ 0.13
SQSTM1-203ENST00000422245 SMARCC1Q92922 1105 aaPredicted RBP15.87■□□□□ 0.13
SQSTM1-203ENST00000422245 EIF4A2Q14240 407 aaKnown RBP15.86■□□□□ 0.13
SQSTM1-203ENST00000422245 MPRIPQ6WCQ1 1025 aa15.86■□□□□ 0.13
SQSTM1-203ENST00000422245 IGSF1Q8N6C5 1336 aa15.84■□□□□ 0.13
SQSTM1-203ENST00000422245 IFNL2Q8IZJ0 200 aa15.83■□□□□ 0.12
SQSTM1-203ENST00000422245 PIGBQ92521 554 aa15.83■□□□□ 0.12
SQSTM1-203ENST00000422245 C4BP0C0L5 1744 aa15.82■□□□□ 0.12
SQSTM1-203ENST00000422245 MSH5O43196 834 aa15.82■□□□□ 0.12
SQSTM1-203ENST00000422245 PHKG2P15735 406 aa15.82■□□□□ 0.12
SQSTM1-203ENST00000422245 MORC1Q86VD1 984 aa15.82■□□□□ 0.12
SQSTM1-203ENST00000422245 FLAD1Q8NFF5 587 aa15.82■□□□□ 0.12
SQSTM1-203ENST00000422245 TMOD3Q9NYL9 352 aa15.82■□□□□ 0.12
SQSTM1-203ENST00000422245 KNSTRNQ9Y448 316 aa15.82■□□□□ 0.12
SQSTM1-203ENST00000422245 CHD4Q14839 1912 aa15.82■□□□□ 0.12
SQSTM1-203ENST00000422245 COL23A1Q86Y22 540 aaPredicted RBP15.81■□□□□ 0.12
SQSTM1-203ENST00000422245 KLHL34Q8N239 644 aa15.8■□□□□ 0.12
SQSTM1-203ENST00000422245 AK7Q96M32 723 aa15.8■□□□□ 0.12
SQSTM1-203ENST00000422245 UBR3Q6ZT12 1888 aa15.79■□□□□ 0.12
SQSTM1-203ENST00000422245 KIF7Q2M1P5 1343 aa15.78■□□□□ 0.12
SQSTM1-203ENST00000422245 LOC102724428A0A0B4J2F2 783 aa15.78■□□□□ 0.12
SQSTM1-203ENST00000422245 HSP90AB1P08238 724 aaKnown RBP15.78■□□□□ 0.12
SQSTM1-203ENST00000422245 SIK1P57059 783 aa15.78■□□□□ 0.12
SQSTM1-203ENST00000422245 AMOTQ4VCS5 1084 aa15.77■□□□□ 0.12
SQSTM1-203ENST00000422245 PLEKHO1Q53GL0 409 aaPredicted RBP15.77■□□□□ 0.12
SQSTM1-203ENST00000422245 GPR162Q16538 588 aa15.76■□□□□ 0.11
SQSTM1-203ENST00000422245 AMER1Q5JTC6 1135 aaPredicted RBP15.76■□□□□ 0.11
SQSTM1-203ENST00000422245 MSL1Q68DK7 614 aa15.76■□□□□ 0.11
SQSTM1-203ENST00000422245 DCAF5Q96JK2 942 aa15.76■□□□□ 0.11
SQSTM1-203ENST00000422245 ASAP1Q9ULH1 1129 aa15.76■□□□□ 0.11
SQSTM1-203ENST00000422245 ZNF831Q5JPB2 1677 aa15.76■□□□□ 0.11
SQSTM1-203ENST00000422245 ERVV-2B6SEH9 535 aa15.75■□□□□ 0.11
SQSTM1-203ENST00000422245 SSFA2P28290 1259 aa15.75■□□□□ 0.11
SQSTM1-203ENST00000422245 ZNF530Q6P9A1 599 aaPredicted RBP15.75■□□□□ 0.11
SQSTM1-203ENST00000422245 KDRP35968 1356 aa15.75■□□□□ 0.11
SQSTM1-203ENST00000422245 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.74■□□□□ 0.11
SQSTM1-203ENST00000422245 AEBP1Q8IUX7 1158 aa15.74■□□□□ 0.11
SQSTM1-203ENST00000422245 LINC00116Q8NCU8 138 aa15.74■□□□□ 0.11
SQSTM1-203ENST00000422245 NLGN2Q8NFZ4 835 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms