RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PODXL2Q9NZ53 605 aa8.46□□□□□ -1.06
VPS54-204ENST00000416400 RBM19Q9Y4C8 960 aaKnown RBP8.46□□□□□ -1.06
VPS54-204ENST00000416400 ATP5J2-PTCD1G3V325 749 aa8.45□□□□□ -1.06
VPS54-204ENST00000416400 AVPP01185 164 aa8.45□□□□□ -1.06
VPS54-204ENST00000416400 ERVK-9P63128 1117 aa8.45□□□□□ -1.06
VPS54-204ENST00000416400 TRAF7Q6Q0C0 670 aa8.45□□□□□ -1.06
VPS54-204ENST00000416400 Q6ZNB5 142 aa8.45□□□□□ -1.06
VPS54-204ENST00000416400 CYP2U1Q7Z449 544 aa8.45□□□□□ -1.06
VPS54-204ENST00000416400 VRTNQ9H8Y1 702 aa8.45□□□□□ -1.06
VPS54-204ENST00000416400 PPP1R15AO75807 674 aaPredicted RBP8.44□□□□□ -1.06
VPS54-204ENST00000416400 ATP1A2P50993 1020 aa8.44□□□□□ -1.06
VPS54-204ENST00000416400 PSME1Q06323 249 aa8.44□□□□□ -1.06
VPS54-204ENST00000416400 TRIM26Q12899 539 aaPredicted RBP8.44□□□□□ -1.06
VPS54-204ENST00000416400 MKRN1Q9UHC7 482 aaKnown RBP8.44□□□□□ -1.06
VPS54-204ENST00000416400 CBLBQ13191 982 aa8.43□□□□□ -1.06
VPS54-204ENST00000416400 SCARF1Q14162 830 aa8.43□□□□□ -1.06
VPS54-204ENST00000416400 CFAP70Q5T0N1 1121 aa8.43□□□□□ -1.06
VPS54-204ENST00000416400 LARP1Q6PKG0 1096 aaKnown RBP8.43□□□□□ -1.06
VPS54-204ENST00000416400 KLF16Q9BXK1 252 aaPredicted RBP8.43□□□□□ -1.06
VPS54-204ENST00000416400 LILRA1O75019 489 aa8.42□□□□□ -1.06
VPS54-204ENST00000416400 ADH1AP07327 375 aa8.42□□□□□ -1.06
VPS54-204ENST00000416400 SCTRP47872 440 aa8.42□□□□□ -1.06
VPS54-204ENST00000416400 SMCPP49901 116 aaPredicted RBP8.42□□□□□ -1.06
VPS54-204ENST00000416400 TSEN34Q9BSV6 310 aaKnown RBP8.42□□□□□ -1.06
VPS54-204ENST00000416400 ACIN1Q9UKV3 1341 aaKnown RBP8.42□□□□□ -1.06
VPS54-204ENST00000416400 RASA1P20936 1047 aa8.41□□□□□ -1.06
VPS54-204ENST00000416400 GTF2IP78347 998 aa8.41□□□□□ -1.06
VPS54-204ENST00000416400 Q6ZVU0 165 aa8.41□□□□□ -1.06
VPS54-204ENST00000416400 RETREG2Q8NC44 543 aa8.41□□□□□ -1.06
VPS54-204ENST00000416400 ADD1P35611 737 aaKnown RBP8.4□□□□□ -1.06
VPS54-204ENST00000416400 RELBQ01201 579 aa8.4□□□□□ -1.06
VPS54-204ENST00000416400 ESCO1Q5FWF5 840 aa8.4□□□□□ -1.06
VPS54-204ENST00000416400 MEIOBQ8N635 442 aa8.4□□□□□ -1.06
VPS54-204ENST00000416400 PBXIP1Q96AQ6 731 aa8.4□□□□□ -1.06
VPS54-204ENST00000416400 TRAIPQ9BWF2 469 aa8.4□□□□□ -1.06
VPS54-204ENST00000416400 OSBPL3Q9H4L5 887 aa8.4□□□□□ -1.06
VPS54-204ENST00000416400 DNAAF2Q9NVR5 837 aaKnown RBP8.4□□□□□ -1.06
VPS54-204ENST00000416400 GNRH1P01148 92 aa8.39□□□□□ -1.07
VPS54-204ENST00000416400 BMP2P12643 396 aa8.39□□□□□ -1.07
VPS54-204ENST00000416400 CDCA8Q53HL2 280 aa8.39□□□□□ -1.07
VPS54-204ENST00000416400 CRIPAKQ8N1N5 446 aa8.39□□□□□ -1.07
VPS54-204ENST00000416400 OGFOD1Q8N543 542 aa8.39□□□□□ -1.07
VPS54-204ENST00000416400 AGBL1Q96MI9 1066 aa8.39□□□□□ -1.07
VPS54-204ENST00000416400 NLRP3Q96P20 1036 aa8.39□□□□□ -1.07
VPS54-204ENST00000416400 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.38□□□□□ -1.07
VPS54-204ENST00000416400 ZBTB7CA1YPR0 619 aa8.38□□□□□ -1.07
VPS54-204ENST00000416400 PTGIRP43119 386 aa8.38□□□□□ -1.07
VPS54-204ENST00000416400 C6orf118Q5T5N4 469 aa8.38□□□□□ -1.07
VPS54-204ENST00000416400 MRPL14Q6P1L8 145 aaKnown RBP8.38□□□□□ -1.07
VPS54-204ENST00000416400 LINC00528Q8N1L1 170 aa8.38□□□□□ -1.07
VPS54-204ENST00000416400 MEN1O00255 615 aa8.37□□□□□ -1.07
VPS54-204ENST00000416400 ST8SIA5O15466 376 aa8.37□□□□□ -1.07
VPS54-204ENST00000416400 KANK4Q5T7N3 995 aaPredicted RBP8.37□□□□□ -1.07
VPS54-204ENST00000416400 LARGE2Q8N3Y3 721 aa8.37□□□□□ -1.07
VPS54-204ENST00000416400 ZNF594Q96JF6 807 aaPredicted RBP8.37□□□□□ -1.07
VPS54-204ENST00000416400 ZNF395Q9H8N7 513 aaPredicted RBP8.37□□□□□ -1.07
VPS54-204ENST00000416400 AAASQ9NRG9 546 aa8.37□□□□□ -1.07
VPS54-204ENST00000416400 GTF2E1P29083 439 aaPredicted RBP8.36□□□□□ -1.07
VPS54-204ENST00000416400 ARHGEF10LQ9HCE6 1279 aa8.36□□□□□ -1.07
VPS54-204ENST00000416400 A0A1W2PRU2 124 aa8.35□□□□□ -1.07
VPS54-204ENST00000416400 FAM196BA6NMK8 535 aa8.35□□□□□ -1.07
VPS54-204ENST00000416400 BACH1O14867 736 aa8.35□□□□□ -1.07
VPS54-204ENST00000416400 BMP1P13497 986 aa8.35□□□□□ -1.07
VPS54-204ENST00000416400 GDF10P55107 478 aa8.35□□□□□ -1.07
VPS54-204ENST00000416400 PDE4CQ08493 712 aa8.35□□□□□ -1.07
VPS54-204ENST00000416400 CCDC102BQ68D86 513 aa8.35□□□□□ -1.07
VPS54-204ENST00000416400 TPCN2Q8NHX9 752 aa8.35□□□□□ -1.07
VPS54-204ENST00000416400 PURBQ96QR8 312 aaKnown RBP8.35□□□□□ -1.07
VPS54-204ENST00000416400 POLMQ9NP87 494 aaPredicted RBP8.35□□□□□ -1.07
VPS54-204ENST00000416400 PCDHGA11Q9Y5H2 935 aa8.35□□□□□ -1.07
VPS54-204ENST00000416400 USP17L15C9J2P7 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L10C9JJH3 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L13C9JLJ4 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L12C9JPN9 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L11C9JVI0 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L21D6R901 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L18D6R9N7 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L22D6RA61 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L17D6RBQ6 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L19D6RCP7 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L20D6RJB6 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 CLDN10P78369 228 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 USP17L24Q0WX57 530 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 KCTD17Q8N5Z5 321 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 ATP13A2Q9NQ11 1180 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 RAB6BQ9NRW1 208 aa8.34□□□□□ -1.07
VPS54-204ENST00000416400 CLN3Q13286 438 aa8.33□□□□□ -1.08
VPS54-204ENST00000416400 FAM200AQ8TCP9 573 aa8.33□□□□□ -1.08
VPS54-204ENST00000416400 SENP2Q9HC62 589 aa8.33□□□□□ -1.08
VPS54-204ENST00000416400 SPINT1O43278 529 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 ATG7O95352 703 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 INHAP05111 366 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 CSB-PGBD3P0DP91 1061 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 SEC13P55735 322 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 PTK7Q13308 1070 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 CRTC2Q53ET0 693 aaPredicted RBP8.32□□□□□ -1.08
VPS54-204ENST00000416400 SLC27A3Q5K4L6 730 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 ANKMY2Q8IV38 441 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 SIX5Q8N196 739 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 CNKSR1Q969H4 720 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 1280 ms