RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SSFA2P28290 1259 aa12.33□□□□□ -0.44
SS18-203ENST00000415083 PTPRUQ92729 1446 aa12.32□□□□□ -0.44
SS18-203ENST00000415083 CEP85Q6P2H3 762 aa12.32□□□□□ -0.44
SS18-203ENST00000415083 CCDC61Q9Y6R9 512 aa12.32□□□□□ -0.44
SS18-203ENST00000415083 KIF24Q5T7B8 1368 aa12.32□□□□□ -0.44
SS18-203ENST00000415083 KIF13AQ9H1H9 1805 aa12.32□□□□□ -0.44
SS18-203ENST00000415083 FOXO3O43524 673 aa12.32□□□□□ -0.44
SS18-203ENST00000415083 PKP1Q13835 747 aa12.32□□□□□ -0.44
SS18-203ENST00000415083 HSP90AB2PQ58FF8 381 aa12.32□□□□□ -0.44
SS18-203ENST00000415083 XRN1Q8IZH2 1706 aaKnown RBP12.32□□□□□ -0.44
SS18-203ENST00000415083 L1TD1Q5T7N2 865 aaKnown RBP12.31□□□□□ -0.44
SS18-203ENST00000415083 TTC22Q5TAA0 569 aa12.31□□□□□ -0.44
SS18-203ENST00000415083 SULT6B1Q6IMI4 303 aa12.31□□□□□ -0.44
SS18-203ENST00000415083 ANKRD44Q8N8A2 993 aa12.31□□□□□ -0.44
SS18-203ENST00000415083 COG3Q96JB2 828 aa12.31□□□□□ -0.44
SS18-203ENST00000415083 MEIS3Q99687 375 aa12.31□□□□□ -0.44
SS18-203ENST00000415083 MIS18AQ9NYP9 233 aa12.31□□□□□ -0.44
SS18-203ENST00000415083 CEP170BQ9Y4F5 1589 aaPredicted RBP12.31□□□□□ -0.44
SS18-203ENST00000415083 K7ELQ4 463 aaPredicted RBP12.31□□□□□ -0.44
SS18-203ENST00000415083 G2E3Q7L622 706 aa12.31□□□□□ -0.44
SS18-203ENST00000415083 USP26Q9BXU7 913 aa12.3□□□□□ -0.44
SS18-203ENST00000415083 LRRC37A3O60309 1634 aa12.3□□□□□ -0.44
SS18-203ENST00000415083 TTC21BQ7Z4L5 1316 aa12.3□□□□□ -0.44
SS18-203ENST00000415083 FAM208AQ9UK61 1670 aaKnown RBP12.3□□□□□ -0.44
SS18-203ENST00000415083 CYP2E1P05181 493 aaPredicted RBP12.29□□□□□ -0.44
SS18-203ENST00000415083 CLEC17AQ6ZS10 378 aa12.29□□□□□ -0.44
SS18-203ENST00000415083 SIRT1Q96EB6 747 aa12.29□□□□□ -0.44
SS18-203ENST00000415083 GRPEL1Q9HAV7 217 aa12.29□□□□□ -0.44
SS18-203ENST00000415083 PIK3C2AO00443 1686 aa12.29□□□□□ -0.44
SS18-203ENST00000415083 USP31Q70CQ4 1352 aa12.29□□□□□ -0.44
SS18-203ENST00000415083 CHAMP1Q96JM3 812 aa12.29□□□□□ -0.44
SS18-203ENST00000415083 ACEP12821 1306 aa12.29□□□□□ -0.44
SS18-203ENST00000415083 CDC45O75419 566 aa12.28□□□□□ -0.44
SS18-203ENST00000415083 SDSP20132 328 aa12.28□□□□□ -0.44
SS18-203ENST00000415083 API5Q9BZZ5 524 aaKnown RBP12.28□□□□□ -0.44
SS18-203ENST00000415083 CIZ1Q9ULV3 898 aaPredicted RBP12.28□□□□□ -0.44
SS18-203ENST00000415083 PPP6R1Q9UPN7 881 aa12.28□□□□□ -0.44
SS18-203ENST00000415083 USP6P35125 1406 aa12.28□□□□□ -0.44
SS18-203ENST00000415083 MAP3K19Q56UN5 1328 aa12.28□□□□□ -0.44
SS18-203ENST00000415083 CALD1Q05682 793 aaKnown RBP12.28□□□□□ -0.44
SS18-203ENST00000415083 NWD1Q149M9 1564 aa12.28□□□□□ -0.44
SS18-203ENST00000415083 NUTM2FA1L443 756 aa12.28□□□□□ -0.44
SS18-203ENST00000415083 LTKP29376 864 aa12.28□□□□□ -0.44
SS18-203ENST00000415083 N4BP2Q86UW6 1770 aaPredicted RBP12.28□□□□□ -0.44
SS18-203ENST00000415083 KIAA0232Q92628 1395 aa12.27□□□□□ -0.44
SS18-203ENST00000415083 HSP90AB1P08238 724 aaKnown RBP12.27□□□□□ -0.44
SS18-203ENST00000415083 ZDHHC9Q9Y397 364 aa12.27□□□□□ -0.44
SS18-203ENST00000415083 DDX11L8A8MPP1 907 aa12.27□□□□□ -0.45
SS18-203ENST00000415083 SALL3Q9BXA9 1300 aa12.27□□□□□ -0.45
SS18-203ENST00000415083 F6X3S4 739 aa12.26□□□□□ -0.45
SS18-203ENST00000415083 TMEM2Q9UHN6 1383 aa12.26□□□□□ -0.45
SS18-203ENST00000415083 MRE11P49959 708 aa12.25□□□□□ -0.45
SS18-203ENST00000415083 MTHFSDQ2M296 383 aaKnown RBP12.25□□□□□ -0.45
SS18-203ENST00000415083 ZGPATQ8N5A5 531 aaKnown RBP12.25□□□□□ -0.45
SS18-203ENST00000415083 PLEKHG3A1L390 1219 aa12.25□□□□□ -0.45
SS18-203ENST00000415083 BAG4O95429 457 aaKnown RBP12.25□□□□□ -0.45
SS18-203ENST00000415083 LMOD3Q0VAK6 560 aa12.25□□□□□ -0.45
SS18-203ENST00000415083 TSHZ3Q63HK5 1081 aa12.25□□□□□ -0.45
SS18-203ENST00000415083 APBB1O00213 710 aa12.24□□□□□ -0.45
SS18-203ENST00000415083 KDRP35968 1356 aa12.23□□□□□ -0.45
SS18-203ENST00000415083 CLCN1P35523 988 aa12.23□□□□□ -0.45
SS18-203ENST00000415083 SLC4A2P04920 1241 aa12.23□□□□□ -0.45
SS18-203ENST00000415083 IL25Q9H293 177 aa12.23□□□□□ -0.45
SS18-203ENST00000415083 RPAP2Q8IXW5 612 aaPredicted RBP12.22□□□□□ -0.45
SS18-203ENST00000415083 TNRQ92752 1358 aa12.22□□□□□ -0.45
SS18-203ENST00000415083 SOX12O15370 315 aa12.22□□□□□ -0.45
SS18-203ENST00000415083 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.22□□□□□ -0.45
SS18-203ENST00000415083 LMBRD1Q9NUN5 540 aa12.22□□□□□ -0.45
SS18-203ENST00000415083 PTPRCP08575 1304 aa12.22□□□□□ -0.45
SS18-203ENST00000415083 NSFL1CQ9UNZ2 370 aaKnown RBP12.21□□□□□ -0.45
SS18-203ENST00000415083 ARHGEF10O15013 1369 aa12.21□□□□□ -0.45
SS18-203ENST00000415083 CHMP4BQ9H444 224 aaKnown RBP12.21□□□□□ -0.45
SS18-203ENST00000415083 PNMA6EA0A0J9YXQ4 647 aa12.21□□□□□ -0.46
SS18-203ENST00000415083 RABEP1Q15276 862 aa12.2□□□□□ -0.46
SS18-203ENST00000415083 EYA1Q99502 592 aa12.2□□□□□ -0.46
SS18-203ENST00000415083 OSBPL3Q9H4L5 887 aa12.2□□□□□ -0.46
SS18-203ENST00000415083 PALD1Q9ULE6 856 aa12.2□□□□□ -0.46
SS18-203ENST00000415083 GPT2Q8TD30 523 aa12.2□□□□□ -0.46
SS18-203ENST00000415083 DIP2AQ14689 1571 aa12.2□□□□□ -0.46
SS18-203ENST00000415083 PDE1AP54750 535 aa12.2□□□□□ -0.46
SS18-203ENST00000415083 UNC5CLQ8IV45 518 aa12.2□□□□□ -0.46
SS18-203ENST00000415083 USP54Q70EL1 1684 aa12.19□□□□□ -0.46
SS18-203ENST00000415083 PLEKHG1Q9ULL1 1385 aa12.19□□□□□ -0.46
SS18-203ENST00000415083 GBP4Q96PP9 640 aa12.19□□□□□ -0.46
SS18-203ENST00000415083 IGSF1Q8N6C5 1336 aa12.19□□□□□ -0.46
SS18-203ENST00000415083 EXOC6BQ9Y2D4 811 aa12.19□□□□□ -0.46
SS18-203ENST00000415083 KLHL40Q2TBA0 621 aa12.18□□□□□ -0.46
SS18-203ENST00000415083 SLC26A8Q96RN1 970 aa12.18□□□□□ -0.46
SS18-203ENST00000415083 RGPD2P0DJD1 1756 aa12.18□□□□□ -0.46
SS18-203ENST00000415083 CACNA1FO60840 1977 aa12.17□□□□□ -0.46
SS18-203ENST00000415083 MCTP1Q6DN14 999 aa12.17□□□□□ -0.46
SS18-203ENST00000415083 UBE2Q2Q8WVN8 375 aa12.17□□□□□ -0.46
SS18-203ENST00000415083 RBM27Q9P2N5 1060 aaKnown RBP12.17□□□□□ -0.46
SS18-203ENST00000415083 IBTKQ9P2D0 1353 aaPredicted RBP12.17□□□□□ -0.46
SS18-203ENST00000415083 ESPNB1AK53 854 aa12.17□□□□□ -0.46
SS18-203ENST00000415083 CEBPAP49715 358 aaPredicted RBP12.17□□□□□ -0.46
SS18-203ENST00000415083 NAP1L5Q96NT1 182 aaPredicted RBP12.17□□□□□ -0.46
SS18-203ENST00000415083 PPP1R9BQ96SB3 815 aa12.17□□□□□ -0.46
SS18-203ENST00000415083 SBNO1A3KN83 1393 aa12.16□□□□□ -0.46
SS18-203ENST00000415083 SLC4A10Q6U841 1118 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms